Wall clock time and date at job start Tue Mar 31 2020 11:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46890 * 2 1 4 4 H 1.09001 * 109.47283 * 305.87601 * 3 2 1 5 5 C 1.50697 * 109.46808 * 185.87453 * 3 2 1 6 6 H 1.07999 * 120.00187 * 245.30546 * 5 3 2 7 7 C 1.37881 * 120.00088 * 65.30411 * 5 3 2 8 8 N 1.31509 * 119.99881 * 186.14804 * 7 5 3 9 9 Si 1.86797 * 119.99855 * 6.15254 * 7 5 3 10 10 H 1.48499 * 109.47223 * 269.99901 * 9 7 5 11 11 H 1.48507 * 109.47073 * 29.99711 * 9 7 5 12 12 H 1.48501 * 109.47126 * 149.99501 * 9 7 5 13 13 N 1.46497 * 109.46672 * 65.87778 * 3 2 1 14 14 C 1.34777 * 119.99921 * 274.99516 * 13 3 2 15 15 O 1.21590 * 120.00014 * 0.02562 * 14 13 3 16 16 N 1.34783 * 119.99860 * 180.02562 * 14 13 3 17 17 C 1.40028 * 119.99676 * 184.83788 * 16 14 13 18 18 C 1.39358 * 120.42843 * 325.18529 * 17 16 14 19 19 C 1.38342 * 118.41841 * 179.75539 * 18 17 16 20 20 C 1.38931 * 119.18657 * 0.49827 * 19 18 17 21 21 N 1.39982 * 119.60957 * 179.74375 * 20 19 18 22 22 N 1.28593 * 124.60723 * 359.71725 * 21 20 19 23 23 C 1.31403 * 108.72872 * 179.89293 * 22 21 20 24 24 C 1.39779 * 105.87758 * 0.35629 * 23 22 21 25 25 N 1.28602 * 124.60717 * 180.02562 * 21 20 19 26 26 N 1.32286 * 120.78045 * 359.76549 * 20 19 18 27 27 C 1.31823 * 121.72587 * 359.97438 * 26 20 19 28 28 H 1.09002 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47385 * 299.99874 * 1 2 3 30 30 H 1.09004 * 109.46694 * 59.99933 * 1 2 3 31 31 H 1.08997 * 109.46938 * 240.00285 * 2 1 3 32 32 H 1.08992 * 109.47062 * 120.00099 * 2 1 3 33 33 H 0.96998 * 120.00617 * 354.97560 * 8 7 5 34 34 H 0.97004 * 120.00452 * 95.00145 * 13 3 2 35 35 H 0.96999 * 119.99997 * 4.83109 * 16 14 13 36 36 H 1.07998 * 120.78714 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.39984 * 180.23917 * 19 18 17 38 38 H 1.07998 * 127.06546 * 180.16136 * 23 22 21 39 39 H 1.07997 * 127.06068 * 179.76131 * 24 23 22 40 40 H 1.07992 * 119.63016 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5933 1.9859 -0.8327 5 6 3.5399 1.4450 -0.1454 6 1 4.1601 1.8074 0.6611 7 6 4.1206 0.9846 -1.3081 8 7 5.4284 0.8730 -1.3905 9 14 3.0498 0.5194 -2.7663 10 1 2.6840 -0.9168 -2.6737 11 1 1.8159 1.3459 -2.7579 12 1 3.7978 0.7595 -4.0264 13 7 1.6705 2.0910 1.2606 14 6 0.4550 2.6573 1.3962 15 8 -0.3351 2.6295 0.4724 16 7 0.1153 3.2543 2.5558 17 6 -1.1812 3.7530 2.7329 18 6 -1.8764 4.3083 1.6604 19 6 -3.1567 4.7837 1.8811 20 6 -3.6992 4.7020 3.1575 21 7 -4.9918 5.1853 3.3919 22 7 -5.7445 5.7213 2.4976 23 6 -6.8859 6.0591 3.0540 24 6 -6.7801 5.6904 4.3981 25 7 -5.5860 5.1586 4.5321 26 7 -3.0083 4.1734 4.1541 27 6 -1.7881 3.7057 3.9803 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9885 1.1825 -0.6616 34 1 2.3007 2.1129 1.9978 35 1 0.7688 3.3384 3.2677 36 1 -1.4277 4.3629 0.6796 37 1 -3.7259 5.2168 1.0718 38 1 -7.7311 6.5285 2.5725 39 1 -7.5263 5.8169 5.1684 40 1 -1.2546 3.2815 4.8179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771757219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:37 Heat of formation + Delta-G solvation = 113.317843 kcal Electronic energy + Delta-G solvation = -25439.252558 eV Core-core repulsion = 21677.884644 eV Total energy + Delta-G solvation = -3761.367914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.81410 -42.07952 -40.74941 -37.65992 -36.19577 -34.63482 -34.40833 -33.93400 -33.29596 -32.76509 -30.24403 -28.93730 -25.88508 -25.28820 -24.26313 -23.40397 -23.18882 -22.25949 -21.49794 -20.33792 -19.73300 -19.23055 -18.51950 -17.92334 -17.49279 -17.06259 -16.62167 -16.33088 -15.72663 -15.66886 -15.33529 -15.24197 -15.04740 -14.59893 -14.43958 -14.41722 -14.24056 -13.87690 -13.72249 -12.74856 -12.62257 -12.50332 -12.35458 -12.23416 -11.91109 -11.70817 -11.54232 -11.53743 -11.40310 -11.15178 -11.01613 -10.90950 -10.67296 -10.52125 -9.90219 -9.15294 -8.76990 -6.46326 -0.59652 -0.00264 0.92654 0.96465 1.43438 1.52042 1.52103 1.57514 1.68961 2.05853 2.41015 2.59493 2.90895 3.04337 3.22186 3.43137 3.65420 3.79424 3.88223 3.97026 4.30571 4.36447 4.38456 4.48285 4.50835 4.64650 4.82950 4.88414 4.98536 5.00343 5.09026 5.16490 5.26548 5.27383 5.44984 5.55765 5.56268 5.61654 5.74523 5.97714 6.05268 6.44777 6.52554 7.06181 7.29099 7.29582 7.52868 8.62541 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.032319 B = 0.002605 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.144592 B =10747.315749 C =11084.226721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C 0.265 3.735 4 H 0.030 0.970 5 C -0.602 4.602 6 H 0.044 0.956 7 C -0.010 4.010 8 N -0.936 5.936 9 Si 1.077 2.923 10 H -0.259 1.259 11 H -0.261 1.261 12 H -0.290 1.290 13 N -0.708 5.708 14 C 0.697 3.303 15 O -0.604 6.604 16 N -0.667 5.667 17 C 0.131 3.869 18 C -0.069 4.069 19 C -0.123 4.123 20 C 0.310 3.690 21 N -0.125 5.125 22 N -0.316 5.316 23 C 0.001 3.999 24 C -0.012 4.012 25 N -0.305 5.305 26 N -0.470 5.470 27 C 0.111 3.889 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.258 0.742 34 H 0.404 0.596 35 H 0.428 0.572 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.250 0.750 39 H 0.245 0.755 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.298 8.675 12.063 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.160 3.840 4 H 0.048 0.952 5 C -0.640 4.640 6 H 0.062 0.938 7 C -0.209 4.209 8 N -0.572 5.572 9 Si 0.901 3.099 10 H -0.185 1.185 11 H -0.186 1.186 12 H -0.217 1.217 13 N -0.359 5.359 14 C 0.397 3.603 15 O -0.483 6.483 16 N -0.316 5.316 17 C 0.031 3.969 18 C -0.098 4.098 19 C -0.146 4.146 20 C 0.084 3.916 21 N -0.017 5.017 22 N -0.154 5.154 23 C -0.184 4.184 24 C -0.197 4.197 25 N -0.143 5.143 26 N -0.181 5.181 27 C -0.051 4.051 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.239 0.761 35 H 0.268 0.732 36 H 0.172 0.828 37 H 0.177 0.823 38 H 0.265 0.735 39 H 0.261 0.739 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -20.960 7.444 10.282 24.504 hybrid contribution 0.658 1.076 1.558 2.005 sum -20.302 8.520 11.840 24.999 Atomic orbital electron populations 1.21749 0.95399 1.00276 1.01534 1.22185 0.95458 0.98513 1.01305 1.18834 0.93384 0.89454 0.82361 0.95191 1.22350 0.91498 1.46991 1.03198 0.93823 1.26786 0.97761 0.93796 1.02596 1.70931 1.05043 1.44880 1.36349 0.83582 0.74496 0.78480 0.73361 1.18488 1.18591 1.21691 1.45216 1.13946 1.58602 1.18180 1.16089 0.82946 0.78490 0.82759 1.90885 1.51505 1.65652 1.40303 1.42362 1.11478 1.60009 1.17788 1.18724 0.86456 0.96147 0.95581 1.21759 0.93546 0.93580 1.00886 1.21557 0.96028 1.01391 0.95653 1.17567 0.82442 1.00468 0.91101 1.44631 1.11800 1.42275 1.02994 1.74089 1.04929 1.14668 1.21679 1.25866 0.96434 1.02493 0.93628 1.25900 0.94417 1.00074 0.99354 1.74312 1.09876 1.20281 1.09798 1.66850 1.08034 1.10560 1.32665 1.22850 0.88419 0.97231 0.96629 0.92724 0.93244 0.94042 0.93054 0.92035 0.93262 0.76119 0.73223 0.82762 0.82285 0.73452 0.73931 0.77701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.53 71.98 0.61 -4.21 16 2 C -0.14 -5.50 5.20 30.60 0.16 -5.34 16 3 C 0.26 11.59 1.81 44.25 0.08 11.67 16 4 H 0.03 1.47 6.06 -2.39 -0.01 1.45 16 5 C -0.60 -30.98 9.09 25.60 0.23 -30.75 16 6 H 0.04 2.36 7.95 -2.91 -0.02 2.34 16 7 C -0.01 -0.52 5.42 84.66 0.46 -0.06 16 8 N -0.94 -55.42 13.69 21.45 0.29 -55.13 16 9 Si 1.08 49.23 25.37 68.60 1.74 50.97 16 10 H -0.26 -10.95 6.76 99.48 0.67 -10.28 16 11 H -0.26 -11.37 6.36 99.48 0.63 -10.74 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 N -0.71 -24.63 5.03 -461.40 -2.32 -26.95 16 14 C 0.70 22.51 7.03 179.05 1.26 23.77 16 15 O -0.60 -23.30 10.94 -4.00 -0.04 -23.34 16 16 N -0.67 -15.12 5.36 -316.77 -1.70 -16.82 16 17 C 0.13 3.09 6.33 38.24 0.24 3.33 16 18 C -0.07 -1.83 8.80 22.56 0.20 -1.64 16 19 C -0.12 -3.15 9.61 22.46 0.22 -2.93 16 20 C 0.31 8.60 7.62 132.71 1.01 9.61 16 21 N -0.13 -3.39 4.12 -55.00 -0.23 -3.62 16 22 N -0.32 -7.38 11.17 -56.78 -0.63 -8.02 16 23 C 0.00 0.01 12.20 85.13 1.04 1.05 16 24 C -0.01 -0.19 12.20 85.13 1.04 0.85 16 25 N -0.31 -7.76 11.77 -56.79 -0.67 -8.43 16 26 N -0.47 -12.48 10.07 -192.21 -1.94 -14.42 16 27 C 0.11 2.32 11.12 84.83 0.94 3.27 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.79 5.62 -2.39 -0.01 1.78 16 30 H 0.04 1.60 7.89 -2.38 -0.02 1.58 16 31 H 0.05 2.17 4.44 -2.39 -0.01 2.16 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.26 15.27 8.72 -92.71 -0.81 14.46 16 34 H 0.40 12.04 8.55 -92.71 -0.79 11.24 16 35 H 0.43 6.43 8.84 -92.71 -0.82 5.61 16 36 H 0.15 4.58 6.30 -2.91 -0.02 4.56 16 37 H 0.16 3.75 7.62 -2.91 -0.02 3.73 16 38 H 0.25 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.24 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.21 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -74.36 335.16 1.36 -73.00 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.64 Total: 24.13 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 7.49 Total: 8.62 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -7.19 Total: -133.38 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.04 Total: -23.34 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 1.74 Total: 50.97 kcal Total: -74.36 1.36 -73.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771757219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.323 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds