Wall clock time and date at job start Tue Mar 31 2020 11:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31785 * 122.75311 * 2 1 4 4 C 1.29024 * 117.12583 * 180.02562 * 3 2 1 5 5 C 1.50694 * 124.91540 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47666 * 89.99378 * 5 4 3 7 7 C 1.46896 * 111.00314 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47229 * 325.00208 * 7 6 5 9 9 C 1.53001 * 109.47252 * 205.00070 * 7 6 5 10 10 C 1.50701 * 109.47232 * 64.99821 * 9 7 6 11 11 H 1.08001 * 119.99717 * 0.02562 * 10 9 7 12 12 C 1.37876 * 119.99813 * 179.97438 * 10 9 7 13 13 N 1.31510 * 120.00272 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99744 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47025 * 60.00075 * 14 12 10 16 16 H 1.48495 * 109.46903 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46719 * 300.00202 * 14 12 10 18 18 C 1.50703 * 109.47483 * 84.99935 * 7 6 5 19 19 C 1.38235 * 120.00292 * 220.00182 * 18 7 6 20 20 C 1.38230 * 119.99899 * 179.97438 * 19 18 7 21 21 C 1.38235 * 120.00326 * 359.95697 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99503 * 39.97475 * 18 7 6 24 24 S 1.70978 * 110.16963 * 0.22394 * 4 3 2 25 25 C 1.33642 * 122.74897 * 180.02562 * 2 1 3 26 26 C 1.50700 * 126.03837 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47276 * 89.97476 * 1 2 3 28 28 H 1.08995 * 109.47107 * 209.97784 * 1 2 3 29 29 H 1.09005 * 109.46997 * 329.97501 * 1 2 3 30 30 H 1.09000 * 109.47326 * 329.99138 * 5 4 3 31 31 H 1.09000 * 109.47215 * 209.99546 * 5 4 3 32 32 H 1.00896 * 110.99878 * 56.04644 * 6 5 4 33 33 H 1.09007 * 109.47213 * 185.00060 * 9 7 6 34 34 H 1.08998 * 109.47120 * 304.99534 * 9 7 6 35 35 H 0.97001 * 120.00530 * 179.97438 * 13 12 10 36 36 H 1.08001 * 119.99730 * 359.97438 * 19 18 7 37 37 H 1.08000 * 120.00376 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 39 39 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00455 * 0.02562 * 23 18 7 41 41 H 1.08994 * 109.47104 * 89.99977 * 26 25 2 42 42 H 1.08998 * 109.46868 * 210.00327 * 26 25 2 43 43 H 1.09002 * 109.47025 * 329.99903 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 6 4.4835 2.1270 -0.0012 6 7 4.8023 2.4996 1.3835 7 6 5.7564 3.6159 1.4221 8 1 6.4546 3.5259 0.5899 9 6 6.5290 3.5811 2.7422 10 6 7.3726 2.3336 2.7978 11 1 7.3593 1.6356 1.9738 12 6 8.1622 2.0840 3.9002 13 7 8.1787 2.9342 4.9034 14 14 9.2084 0.5379 3.9689 15 1 10.1662 0.5376 2.8341 16 1 9.9582 0.5042 5.2502 17 1 8.3319 -0.6573 3.8772 18 6 5.0088 4.9197 1.3117 19 6 5.5224 5.9482 0.5440 20 6 4.8364 7.1439 0.4425 21 6 3.6363 7.3110 1.1079 22 6 3.1220 6.2821 1.8744 23 6 3.8091 5.0870 1.9779 24 16 3.9333 -0.6732 -0.0073 25 6 2.2299 -1.1240 -0.0005 26 6 1.6846 -2.5289 -0.0006 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.0432 2.9814 -0.5151 31 1 5.3958 1.8245 -0.5152 32 1 5.1522 1.7065 1.8999 33 1 7.1727 4.4583 2.8097 34 1 5.8258 3.5817 3.5749 35 1 8.7339 2.7584 5.6791 36 1 6.4597 5.8174 0.0236 37 1 5.2378 7.9476 -0.1570 38 1 3.1024 8.2468 1.0321 39 1 2.1846 6.4126 2.3947 40 1 3.4078 4.2835 2.5776 41 1 1.5528 -2.8674 -1.0282 42 1 2.3830 -3.1897 0.5129 43 1 0.7237 -2.5457 0.5136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775554659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:14 Heat of formation + Delta-G solvation = 53.852172 kcal Electronic energy + Delta-G solvation = -23351.856988 eV Core-core repulsion = 20101.910912 eV Total energy + Delta-G solvation = -3249.946076 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.82916 -38.90765 -36.26409 -33.73329 -32.63063 -31.17043 -30.34791 -29.72606 -28.88777 -26.62018 -24.89539 -24.20469 -22.28002 -21.85077 -21.78293 -19.60611 -18.74001 -17.80324 -16.63772 -16.06695 -15.40499 -15.33220 -14.85393 -14.66995 -14.47242 -14.17588 -13.63061 -13.54531 -13.14788 -13.10766 -13.03980 -12.81577 -12.59282 -12.37247 -12.29112 -12.07929 -12.02928 -11.72245 -11.25645 -11.06359 -11.01286 -10.77068 -10.59784 -10.50169 -10.34923 -9.65262 -9.41283 -9.23464 -9.07437 -8.55468 -8.44448 -8.37548 -8.04897 -7.87250 -6.07804 -4.12661 0.79987 1.45312 1.87336 1.89863 1.96095 2.88998 3.27547 3.33195 3.34325 4.16218 4.32789 4.40220 4.84412 4.89342 5.01015 5.12656 5.27739 5.29980 5.36682 5.37101 5.43197 5.47758 5.53623 5.55142 5.69403 5.71075 5.75552 5.89511 5.98332 6.05258 6.10784 6.25081 6.35388 6.45438 6.57110 6.69596 6.94716 7.02784 7.17326 7.39648 7.54347 7.57034 7.86311 7.90789 7.94389 8.06262 8.26157 8.92323 9.52017 11.02541 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.005310 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.684445 B = 5272.009936 C = 8256.373095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.457 5.457 4 C 0.071 3.929 5 C 0.134 3.866 6 N -0.670 5.670 7 C 0.130 3.870 8 H 0.044 0.956 9 C 0.029 3.971 10 C -0.529 4.529 11 H 0.052 0.948 12 C 0.065 3.935 13 N -0.887 5.887 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.056 4.056 19 C -0.123 4.123 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.083 4.083 24 S 0.114 5.886 25 C -0.238 4.238 26 C -0.071 4.071 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.360 0.640 33 H 0.026 0.974 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.358 -4.063 -11.021 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 N -0.171 5.171 4 C -0.208 4.208 5 C 0.002 3.998 6 N -0.305 5.305 7 C 0.020 3.980 8 H 0.062 0.938 9 C -0.008 4.008 10 C -0.567 4.567 11 H 0.070 0.930 12 C -0.138 4.138 13 N -0.525 5.525 14 Si 0.716 3.284 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.057 4.057 19 C -0.142 4.142 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.101 4.101 24 S 0.370 5.630 25 C -0.360 4.360 26 C -0.130 4.130 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.182 0.818 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.055 -3.638 -10.768 16.568 hybrid contribution 0.654 -1.169 -0.069 1.341 sum -11.401 -4.807 -10.837 16.448 Atomic orbital electron populations 1.20323 0.87525 1.03149 1.02488 1.20174 0.98012 0.86375 1.02633 1.66110 1.04533 1.31033 1.15412 1.26921 0.94069 0.97419 1.02387 1.20512 0.93259 0.92850 0.93220 1.60424 1.48142 1.12208 1.09716 1.20671 0.89921 0.86041 1.01324 0.93784 1.19256 0.94331 0.97425 0.89791 1.21063 1.26019 1.06551 1.03093 0.92981 1.24955 0.96728 0.96497 0.95597 1.69946 1.39648 1.35797 1.07130 0.86712 0.80590 0.83711 0.77359 1.20254 1.21211 1.20103 1.20149 0.94783 0.95733 0.95035 1.21022 0.99746 0.93633 0.99762 1.20955 0.95781 0.97291 1.00653 1.20973 0.96732 0.98664 0.99077 1.21120 0.99922 0.94015 0.99690 1.21045 0.94300 0.96632 0.98124 1.84100 1.06580 1.03829 1.68483 1.25647 0.95332 1.00807 1.14170 1.20190 1.01006 0.89316 1.02469 0.90997 0.90967 0.90643 0.88692 0.93384 0.81848 0.95573 0.95230 0.92766 0.86671 0.86963 0.87128 0.86923 0.85435 0.90930 0.91281 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.06 36.00 0.36 -0.42 16 2 C 0.06 0.84 6.74 -84.22 -0.57 0.27 16 3 N -0.46 -7.51 10.53 -8.06 -0.08 -7.59 16 4 C 0.07 1.14 6.90 -13.46 -0.09 1.04 16 5 C 0.13 2.19 6.06 -4.98 -0.03 2.16 16 6 N -0.67 -12.57 5.54 -109.23 -0.60 -13.18 16 7 C 0.13 2.60 2.19 -68.86 -0.15 2.45 16 8 H 0.04 0.88 7.66 -51.93 -0.40 0.48 16 9 C 0.03 0.72 4.55 -27.88 -0.13 0.60 16 10 C -0.53 -13.92 8.12 -34.44 -0.28 -14.20 16 11 H 0.05 1.31 7.49 -52.49 -0.39 0.92 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 14 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.06 -1.05 4.71 -104.62 -0.49 -1.54 16 19 C -0.12 -2.08 9.67 -39.59 -0.38 -2.47 16 20 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 21 C -0.14 -2.01 10.05 -39.58 -0.40 -2.41 16 22 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 23 C -0.08 -1.51 9.32 -39.58 -0.37 -1.88 16 24 S 0.11 1.60 23.18 -107.50 -2.49 -0.89 16 25 C -0.24 -3.03 6.59 -35.92 -0.24 -3.27 16 26 C -0.07 -0.63 10.10 36.01 0.36 -0.27 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.59 6.72 -51.93 -0.35 0.24 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.56 8.00 -51.93 -0.42 1.15 16 31 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.36 7.30 7.20 -39.29 -0.28 7.02 16 33 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.12 1.80 8.04 -52.49 -0.42 1.38 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.13 2.43 7.72 -52.49 -0.41 2.03 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.58 6.76 -51.93 -0.35 0.23 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -29.85 372.98 -11.51 -41.37 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.37 Total: 6.97 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -3.29 Total: -23.06 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.05 Total: -45.84 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.49 Total: -0.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.85 -11.51 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775554659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.221 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds