Wall clock time and date at job start Tue Mar 31 2020 11:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31785 * 122.75311 * 2 1 4 4 C 1.29024 * 117.12583 * 180.02562 * 3 2 1 5 5 C 1.50694 * 124.91540 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47666 * 89.99378 * 5 4 3 7 7 C 1.46896 * 111.00314 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47229 * 325.00208 * 7 6 5 9 9 C 1.53001 * 109.47252 * 205.00070 * 7 6 5 10 10 C 1.50701 * 109.47232 * 64.99821 * 9 7 6 11 11 H 1.08001 * 119.99717 * 0.02562 * 10 9 7 12 12 C 1.37876 * 119.99813 * 179.97438 * 10 9 7 13 13 N 1.31510 * 120.00272 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99744 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47025 * 60.00075 * 14 12 10 16 16 H 1.48495 * 109.46903 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46719 * 300.00202 * 14 12 10 18 18 C 1.50703 * 109.47483 * 84.99935 * 7 6 5 19 19 C 1.38235 * 120.00292 * 220.00182 * 18 7 6 20 20 C 1.38230 * 119.99899 * 179.97438 * 19 18 7 21 21 C 1.38235 * 120.00326 * 359.95697 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99503 * 39.97475 * 18 7 6 24 24 S 1.70978 * 110.16963 * 0.22394 * 4 3 2 25 25 C 1.33642 * 122.74897 * 180.02562 * 2 1 3 26 26 C 1.50700 * 126.03837 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47276 * 89.97476 * 1 2 3 28 28 H 1.08995 * 109.47107 * 209.97784 * 1 2 3 29 29 H 1.09005 * 109.46997 * 329.97501 * 1 2 3 30 30 H 1.09000 * 109.47326 * 329.99138 * 5 4 3 31 31 H 1.09000 * 109.47215 * 209.99546 * 5 4 3 32 32 H 1.00896 * 110.99878 * 56.04644 * 6 5 4 33 33 H 1.09007 * 109.47213 * 185.00060 * 9 7 6 34 34 H 1.08998 * 109.47120 * 304.99534 * 9 7 6 35 35 H 0.97001 * 120.00530 * 179.97438 * 13 12 10 36 36 H 1.08001 * 119.99730 * 359.97438 * 19 18 7 37 37 H 1.08000 * 120.00376 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 39 39 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00455 * 0.02562 * 23 18 7 41 41 H 1.08994 * 109.47104 * 89.99977 * 26 25 2 42 42 H 1.08998 * 109.46868 * 210.00327 * 26 25 2 43 43 H 1.09002 * 109.47025 * 329.99903 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 6 4.4835 2.1270 -0.0012 6 7 4.8023 2.4996 1.3835 7 6 5.7564 3.6159 1.4221 8 1 6.4546 3.5259 0.5899 9 6 6.5290 3.5811 2.7422 10 6 7.3726 2.3336 2.7978 11 1 7.3593 1.6356 1.9738 12 6 8.1622 2.0840 3.9002 13 7 8.1787 2.9342 4.9034 14 14 9.2084 0.5379 3.9689 15 1 10.1662 0.5376 2.8341 16 1 9.9582 0.5042 5.2502 17 1 8.3319 -0.6573 3.8772 18 6 5.0088 4.9197 1.3117 19 6 5.5224 5.9482 0.5440 20 6 4.8364 7.1439 0.4425 21 6 3.6363 7.3110 1.1079 22 6 3.1220 6.2821 1.8744 23 6 3.8091 5.0870 1.9779 24 16 3.9333 -0.6732 -0.0073 25 6 2.2299 -1.1240 -0.0005 26 6 1.6846 -2.5289 -0.0006 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.0432 2.9814 -0.5151 31 1 5.3958 1.8245 -0.5152 32 1 5.1522 1.7065 1.8999 33 1 7.1727 4.4583 2.8097 34 1 5.8258 3.5817 3.5749 35 1 8.7339 2.7584 5.6791 36 1 6.4597 5.8174 0.0236 37 1 5.2378 7.9476 -0.1570 38 1 3.1024 8.2468 1.0321 39 1 2.1846 6.4126 2.3947 40 1 3.4078 4.2835 2.5776 41 1 1.5528 -2.8674 -1.0282 42 1 2.3830 -3.1897 0.5129 43 1 0.7237 -2.5457 0.5136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775554659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:13 Heat of formation + Delta-G solvation = 37.479737 kcal Electronic energy + Delta-G solvation = -23352.566950 eV Core-core repulsion = 20101.910912 eV Total energy + Delta-G solvation = -3250.656038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.93599 -40.25955 -37.72688 -35.21887 -34.26276 -32.49653 -31.63194 -30.73241 -30.41844 -28.06004 -26.21066 -25.57190 -23.74130 -23.28463 -23.07514 -21.10133 -19.83011 -18.88809 -18.58705 -17.48400 -16.89183 -16.63482 -16.29704 -16.13041 -15.79995 -15.40233 -14.93144 -14.74594 -14.38726 -14.29399 -14.08748 -13.90793 -13.79381 -13.64612 -13.54541 -13.48051 -13.15024 -13.03780 -12.89259 -12.73156 -12.51084 -12.35094 -12.02079 -11.98189 -11.77500 -11.48596 -11.18687 -10.59524 -10.55826 -10.16698 -9.68479 -9.61241 -9.44277 -9.32232 -8.19357 -6.31340 -0.29957 0.37737 0.59309 0.65950 0.78185 1.40399 1.42174 1.49710 1.78778 2.39818 2.99176 3.07519 3.13131 3.45806 3.93456 4.04696 4.10532 4.15125 4.16578 4.28159 4.29450 4.40961 4.52012 4.58485 4.60886 4.68655 4.78475 4.79707 4.80522 4.88177 4.94953 5.04621 5.04926 5.21417 5.30037 5.39939 5.44897 5.46555 5.67465 5.73019 5.79262 5.83560 6.14980 6.25182 6.27816 6.44235 6.82561 6.83839 7.37804 8.91681 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.005310 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.684445 B = 5272.009936 C = 8256.373095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.033 3.967 3 N -0.479 5.479 4 C 0.042 3.958 5 C 0.143 3.857 6 N -0.672 5.672 7 C 0.144 3.856 8 H 0.043 0.957 9 C 0.042 3.958 10 C -0.535 4.535 11 H 0.062 0.938 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.957 3.043 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.265 1.265 18 C -0.079 4.079 19 C -0.136 4.136 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.103 4.103 24 S 0.117 5.883 25 C -0.224 4.224 26 C -0.072 4.072 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.348 0.652 33 H -0.005 1.005 34 H -0.004 1.004 35 H 0.263 0.737 36 H 0.122 0.878 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -4.973 -12.534 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 N -0.195 5.195 4 C -0.236 4.236 5 C 0.010 3.990 6 N -0.305 5.305 7 C 0.035 3.965 8 H 0.061 0.939 9 C 0.005 3.995 10 C -0.573 4.573 11 H 0.080 0.920 12 C -0.190 4.190 13 N -0.568 5.568 14 Si 0.782 3.218 15 H -0.192 1.192 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.080 4.080 19 C -0.154 4.154 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.122 4.122 24 S 0.372 5.628 25 C -0.345 4.345 26 C -0.131 4.131 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.168 0.832 33 H 0.013 0.987 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.216 -4.543 -12.308 18.622 hybrid contribution 0.918 -0.867 0.380 1.319 sum -12.298 -5.410 -11.928 17.966 Atomic orbital electron populations 1.20425 0.85120 1.03901 1.03662 1.20733 0.99634 0.86044 1.03395 1.66107 1.04971 1.32891 1.15496 1.26718 0.94097 0.98198 1.04555 1.20384 0.93842 0.93240 0.91491 1.60403 1.47328 1.11357 1.11462 1.20336 0.90079 0.87783 0.98306 0.93902 1.19002 0.93396 0.95740 0.91369 1.21428 1.25674 1.06978 1.03236 0.92021 1.25854 0.98154 0.99741 0.95226 1.70095 1.40850 1.37977 1.07888 0.85619 0.78924 0.79832 0.77441 1.19211 1.21198 1.18993 1.20078 0.95408 0.95597 0.96914 1.21225 1.00358 0.94075 0.99781 1.21354 0.95546 0.97133 1.00245 1.21409 0.96496 0.99461 0.97427 1.21398 1.00530 0.93336 0.99839 1.20996 0.94898 0.97468 0.98815 1.83987 1.08144 1.02421 1.68202 1.26191 0.94120 1.02442 1.11767 1.20399 1.01869 0.86752 1.04115 0.89546 0.88459 0.91635 0.89238 0.92534 0.83215 0.98660 0.98600 0.92821 0.85954 0.83663 0.83489 0.84793 0.87536 0.88939 0.90634 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.06 71.23 0.72 -0.63 16 2 C 0.03 0.89 6.74 41.52 0.28 1.17 16 3 N -0.48 -15.91 10.53 -179.41 -1.89 -17.79 16 4 C 0.04 1.38 6.90 88.52 0.61 1.99 16 5 C 0.14 4.82 6.06 85.56 0.52 5.34 16 6 N -0.67 -26.57 5.54 -499.48 -2.77 -29.34 16 7 C 0.14 6.10 2.19 44.17 0.10 6.19 16 8 H 0.04 1.78 7.66 -2.39 -0.02 1.76 16 9 C 0.04 2.22 4.55 29.85 0.14 2.36 16 10 C -0.54 -29.10 8.12 25.60 0.21 -28.89 16 11 H 0.06 3.16 7.49 -2.91 -0.02 3.14 16 12 C 0.01 0.50 5.46 84.66 0.46 0.96 16 13 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 14 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C -0.08 -3.07 4.71 -19.87 -0.09 -3.16 16 19 C -0.14 -4.59 9.67 22.27 0.22 -4.38 16 20 C -0.12 -3.51 10.05 22.27 0.22 -3.29 16 21 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 22 C -0.13 -4.14 10.05 22.27 0.22 -3.92 16 23 C -0.10 -3.91 9.32 22.27 0.21 -3.70 16 24 S 0.12 3.22 23.18 -56.49 -1.31 1.91 16 25 C -0.22 -5.32 6.59 24.64 0.16 -5.15 16 26 C -0.07 -1.06 10.10 71.24 0.72 -0.34 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.29 6.72 -2.39 -0.02 1.27 16 29 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.09 3.08 8.00 -2.39 -0.02 3.06 16 31 H 0.06 1.78 8.06 -2.39 -0.02 1.76 16 32 H 0.35 14.87 7.20 -89.70 -0.65 14.23 16 33 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 34 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.12 3.84 8.04 -2.91 -0.02 3.82 16 37 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.11 4.38 7.72 -2.91 -0.02 4.35 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.08 6.76 -2.39 -0.02 1.06 16 Total: -1.00 -67.45 372.98 1.62 -65.83 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.36 Total: 28.51 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 4.91 Total: -38.74 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.37 Total: -102.77 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.31 Total: 1.91 kcal Total: -67.45 1.62 -65.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775554659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.312 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds