Wall clock time and date at job start Tue Mar 31 2020 11:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35242 * 126.07360 * 2 1 4 4 C 1.40404 * 107.86855 * 180.17634 * 3 2 1 5 5 N 1.40155 * 125.97481 * 179.82722 * 4 3 2 6 6 C 1.34777 * 119.99885 * 359.70933 * 5 4 3 7 7 O 1.21693 * 120.00018 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99726 * 180.27534 * 6 5 4 9 9 N 1.40095 * 120.00629 * 359.72965 * 8 6 5 10 10 C 1.31742 * 120.00723 * 179.97438 * 9 8 6 11 11 C 1.47346 * 121.16844 * 359.71965 * 10 9 8 12 12 C 1.34267 * 118.57056 * 179.73312 * 11 10 9 13 13 N 1.36709 * 121.24779 * 0.58027 * 12 11 10 14 14 H 0.96995 * 118.64788 * 179.69282 * 13 12 11 15 15 C 1.36709 * 122.70457 * 359.66224 * 13 12 11 16 16 C 1.34265 * 121.24810 * 0.02827 * 15 13 12 17 17 N 1.31219 * 108.05105 * 359.56261 * 4 3 2 18 18 N 1.34968 * 126.06510 * 179.69612 * 2 1 3 19 19 C 1.46498 * 125.97977 * 359.96016 * 18 2 1 20 20 C 1.50703 * 109.47216 * 270.00061 * 19 18 2 21 21 H 1.08000 * 119.99606 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00126 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46997 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47424 * 119.99774 * 24 22 20 27 27 H 1.48501 * 109.47107 * 240.00101 * 24 22 20 28 28 H 1.08994 * 109.47414 * 270.30255 * 1 2 3 29 29 H 1.09001 * 109.46495 * 30.30342 * 1 2 3 30 30 H 1.08993 * 109.46839 * 150.29966 * 1 2 3 31 31 H 1.08001 * 126.06372 * 0.03122 * 3 2 1 32 32 H 0.97000 * 120.00378 * 179.71648 * 5 4 3 33 33 H 0.97004 * 119.99647 * 179.72351 * 8 6 5 34 34 H 1.07995 * 120.71884 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.37765 * 180.26719 * 12 11 10 36 36 H 1.07997 * 119.37567 * 180.02562 * 15 13 12 37 37 H 1.08001 * 120.71465 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46889 * 29.99870 * 19 18 2 39 39 H 1.08994 * 109.47563 * 149.99708 * 19 18 2 40 40 H 0.96996 * 120.00302 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6372 0.6545 -0.0041 5 7 4.7736 1.4747 -0.0089 6 6 4.6369 2.8155 -0.0157 7 8 3.5267 3.3139 -0.0173 8 7 5.7297 3.6042 -0.0259 9 7 7.0078 3.0305 -0.0237 10 6 8.0761 3.8015 -0.0341 11 6 7.9566 5.2699 -0.0545 12 6 9.0798 6.0056 -0.0590 13 7 10.3134 5.4164 -0.0569 14 1 11.0999 5.9840 -0.0649 15 6 10.4842 4.0601 -0.0434 16 6 9.4323 3.2257 -0.0320 17 7 3.6337 -0.6577 0.0030 18 7 2.3016 -1.0910 0.0058 19 6 1.8500 -2.4846 0.0140 20 6 1.6959 -2.9544 1.4376 21 1 1.9123 -2.2819 2.2545 22 6 1.2777 -4.2423 1.6971 23 7 1.0127 -5.0607 0.7023 24 14 1.0860 -4.8244 3.4617 25 1 1.4433 -3.7205 4.3887 26 1 -0.3218 -5.2335 3.6979 27 1 1.9848 -5.9819 3.7016 28 1 -0.3634 0.0054 1.0276 29 1 -0.3632 0.8873 -0.5186 30 1 -0.3633 -0.8926 -0.5091 31 1 1.9721 2.1210 0.0005 32 1 5.6585 1.0775 -0.0073 33 1 5.6313 4.5692 -0.0349 34 1 6.9865 5.7444 -0.0617 35 1 9.0074 7.0831 -0.0695 36 1 11.4841 3.6520 -0.0421 37 1 9.5772 2.1555 -0.0210 38 1 0.8911 -2.5588 -0.4989 39 1 2.5842 -3.1076 -0.4967 40 1 0.7181 -5.9666 0.8849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782059567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:05 Heat of formation + Delta-G solvation = 129.553055 kcal Electronic energy + Delta-G solvation = -24582.884451 eV Core-core repulsion = 20822.220548 eV Total energy + Delta-G solvation = -3760.663903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59124 -40.17105 -39.30254 -36.42602 -34.59314 -33.29623 -32.73959 -32.00170 -31.17277 -30.61672 -29.03340 -26.49600 -26.17816 -23.76823 -23.08323 -22.71190 -21.54156 -19.57279 -19.36554 -19.33508 -17.97761 -17.41486 -16.59653 -16.30709 -15.75904 -15.49944 -15.35881 -14.99755 -14.54145 -14.42052 -14.25632 -14.06212 -13.87877 -13.17733 -12.88235 -12.55515 -12.38861 -12.27629 -12.15757 -12.01954 -11.56093 -11.29375 -11.00035 -10.77465 -10.31009 -10.27031 -10.16765 -10.14122 -9.94555 -9.75153 -9.54704 -9.38541 -8.56762 -7.77099 -7.42464 -7.16794 -6.17146 -4.24125 1.03661 1.14427 2.48919 2.63201 2.76287 3.10464 3.26133 3.32309 3.33827 3.40697 3.42456 4.04163 4.07290 4.15436 4.37397 4.44175 4.60298 4.93256 5.15840 5.16462 5.38265 5.56088 5.76026 5.84935 5.88225 5.98909 6.11273 6.22249 6.39240 6.58919 6.59724 6.72325 6.78436 6.84577 6.95981 7.10709 7.18775 7.60820 7.70481 7.76770 7.98857 8.19927 8.29482 8.80423 8.81278 8.89617 9.41700 10.89946 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.002395 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.696189 B =11690.231114 C =12573.007662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.291 4.291 4 C 0.282 3.718 5 N -0.627 5.627 6 C 0.740 3.260 7 O -0.570 6.570 8 N -0.582 5.582 9 N -0.303 5.303 10 C 0.180 3.820 11 C -0.257 4.257 12 C 0.135 3.865 13 N -0.627 5.627 14 H 0.413 0.587 15 C 0.110 3.890 16 C -0.176 4.176 17 N -0.322 5.322 18 N -0.320 5.320 19 C 0.259 3.741 20 C -0.532 4.532 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.893 5.893 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.159 0.841 32 H 0.418 0.582 33 H 0.397 0.603 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.595 23.226 -2.938 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.322 4.322 4 C 0.028 3.972 5 N -0.277 5.277 6 C 0.439 3.561 7 O -0.443 6.443 8 N -0.329 5.329 9 N -0.118 5.118 10 C -0.001 4.001 11 C -0.286 4.286 12 C 0.008 3.992 13 N -0.237 5.237 14 H 0.247 0.753 15 C -0.015 4.015 16 C -0.203 4.203 17 N -0.153 5.153 18 N -0.102 5.102 19 C 0.141 3.859 20 C -0.570 4.570 21 H 0.083 0.917 22 C -0.139 4.139 23 N -0.531 5.531 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.177 0.823 32 H 0.255 0.745 33 H 0.238 0.762 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.797 21.056 -2.970 28.381 hybrid contribution 0.347 1.516 0.953 1.824 sum 19.144 22.572 -2.018 29.665 Atomic orbital electron populations 1.20316 0.87984 1.02717 1.03065 1.21034 0.94816 0.87205 1.01125 1.21236 0.89784 0.99753 1.21468 1.18738 0.86684 0.89364 1.02399 1.41313 1.08097 1.03454 1.74801 1.15162 0.82570 0.80877 0.77458 1.90948 1.21876 1.73719 1.57795 1.45942 1.01493 1.08112 1.77386 1.75345 0.88827 1.24532 1.23058 1.21734 0.92686 0.89939 0.95717 1.21948 0.98211 0.93426 1.15034 1.21387 0.84260 0.98255 0.95252 1.41288 1.07884 1.06191 1.68332 0.75265 1.21448 1.00097 0.82222 0.97773 1.21256 0.87909 1.00144 1.10992 1.77274 0.99682 1.08365 1.29933 1.48953 1.00981 1.07665 1.52603 1.19660 0.95918 0.71494 0.98840 1.21387 1.46264 0.97906 0.91485 0.91704 1.24929 0.94803 0.96081 0.98081 1.69931 1.45239 1.06911 1.31045 0.86310 0.77774 0.78756 0.83898 1.19583 1.20705 1.20707 0.90512 0.90894 0.90936 0.82330 0.74537 0.76155 0.84637 0.82526 0.81971 0.83240 0.92850 0.93037 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.11 36.01 0.36 -1.15 16 2 C 0.09 2.04 6.93 -82.28 -0.57 1.47 16 3 C -0.29 -6.63 9.52 -39.83 -0.38 -7.01 16 4 C 0.28 6.51 8.11 -154.39 -1.25 5.26 16 5 N -0.63 -12.30 5.41 -15.49 -0.08 -12.38 16 6 C 0.74 13.68 8.65 -86.92 -0.75 12.93 16 7 O -0.57 -11.85 14.31 5.20 0.07 -11.78 16 8 N -0.58 -8.43 6.19 27.65 0.17 -8.26 16 9 N -0.30 -4.08 10.47 34.58 0.36 -3.72 16 10 C 0.18 1.83 7.09 -80.50 -0.57 1.26 16 11 C -0.26 -1.86 9.63 -37.28 -0.36 -2.22 16 12 C 0.14 0.48 11.15 -16.78 -0.19 0.30 16 13 N -0.63 -1.31 5.28 -12.94 -0.07 -1.38 16 14 H 0.41 -0.58 8.88 -40.82 -0.36 -0.94 16 15 C 0.11 0.37 11.15 -16.78 -0.19 0.19 16 16 C -0.18 -1.26 10.29 -37.28 -0.38 -1.64 16 17 N -0.32 -8.14 12.59 31.44 0.40 -7.75 16 18 N -0.32 -8.12 3.59 -58.33 -0.21 -8.33 16 19 C 0.26 6.96 5.99 -5.19 -0.03 6.93 16 20 C -0.53 -15.25 9.39 -34.44 -0.32 -15.58 16 21 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 22 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 24 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.33 7.07 -51.93 -0.37 0.96 16 31 H 0.16 3.53 5.91 -52.49 -0.31 3.22 16 32 H 0.42 7.56 7.86 -40.82 -0.32 7.24 16 33 H 0.40 4.79 6.66 -182.60 -1.22 3.57 16 34 H 0.14 0.91 6.38 -52.49 -0.34 0.57 16 35 H 0.16 0.02 8.06 -52.49 -0.42 -0.40 16 36 H 0.16 -0.03 8.06 -52.49 -0.42 -0.45 16 37 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.05 1.41 7.04 -51.93 -0.37 1.05 16 39 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -37.89 349.97 -8.46 -46.35 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.36 Total: 7.84 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -4.73 Total: 2.44 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 1.30 Total: -66.90 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.89 -8.46 -46.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782059567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.898 kcal (2) G-P(sol) polarization free energy of solvation -37.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds