Wall clock time and date at job start Tue Mar 31 2020 11:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35242 * 126.07360 * 2 1 4 4 C 1.40404 * 107.86855 * 180.17634 * 3 2 1 5 5 N 1.40155 * 125.97481 * 179.82722 * 4 3 2 6 6 C 1.34777 * 119.99885 * 359.70933 * 5 4 3 7 7 O 1.21693 * 120.00018 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99726 * 180.27534 * 6 5 4 9 9 N 1.40095 * 120.00629 * 359.72965 * 8 6 5 10 10 C 1.31742 * 120.00723 * 179.97438 * 9 8 6 11 11 C 1.47346 * 121.16844 * 359.71965 * 10 9 8 12 12 C 1.34267 * 118.57056 * 179.73312 * 11 10 9 13 13 N 1.36709 * 121.24779 * 0.58027 * 12 11 10 14 14 H 0.96995 * 118.64788 * 179.69282 * 13 12 11 15 15 C 1.36709 * 122.70457 * 359.66224 * 13 12 11 16 16 C 1.34265 * 121.24810 * 0.02827 * 15 13 12 17 17 N 1.31219 * 108.05105 * 359.56261 * 4 3 2 18 18 N 1.34968 * 126.06510 * 179.69612 * 2 1 3 19 19 C 1.46498 * 125.97977 * 359.96016 * 18 2 1 20 20 C 1.50703 * 109.47216 * 270.00061 * 19 18 2 21 21 H 1.08000 * 119.99606 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00126 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46997 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47424 * 119.99774 * 24 22 20 27 27 H 1.48501 * 109.47107 * 240.00101 * 24 22 20 28 28 H 1.08994 * 109.47414 * 270.30255 * 1 2 3 29 29 H 1.09001 * 109.46495 * 30.30342 * 1 2 3 30 30 H 1.08993 * 109.46839 * 150.29966 * 1 2 3 31 31 H 1.08001 * 126.06372 * 0.03122 * 3 2 1 32 32 H 0.97000 * 120.00378 * 179.71648 * 5 4 3 33 33 H 0.97004 * 119.99647 * 179.72351 * 8 6 5 34 34 H 1.07995 * 120.71884 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.37765 * 180.26719 * 12 11 10 36 36 H 1.07997 * 119.37567 * 180.02562 * 15 13 12 37 37 H 1.08001 * 120.71465 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46889 * 29.99870 * 19 18 2 39 39 H 1.08994 * 109.47563 * 149.99708 * 19 18 2 40 40 H 0.96996 * 120.00302 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6372 0.6545 -0.0041 5 7 4.7736 1.4747 -0.0089 6 6 4.6369 2.8155 -0.0157 7 8 3.5267 3.3139 -0.0173 8 7 5.7297 3.6042 -0.0259 9 7 7.0078 3.0305 -0.0237 10 6 8.0761 3.8015 -0.0341 11 6 7.9566 5.2699 -0.0545 12 6 9.0798 6.0056 -0.0590 13 7 10.3134 5.4164 -0.0569 14 1 11.0999 5.9840 -0.0649 15 6 10.4842 4.0601 -0.0434 16 6 9.4323 3.2257 -0.0320 17 7 3.6337 -0.6577 0.0030 18 7 2.3016 -1.0910 0.0058 19 6 1.8500 -2.4846 0.0140 20 6 1.6959 -2.9544 1.4376 21 1 1.9123 -2.2819 2.2545 22 6 1.2777 -4.2423 1.6971 23 7 1.0127 -5.0607 0.7023 24 14 1.0860 -4.8244 3.4617 25 1 1.4433 -3.7205 4.3887 26 1 -0.3218 -5.2335 3.6979 27 1 1.9848 -5.9819 3.7016 28 1 -0.3634 0.0054 1.0276 29 1 -0.3632 0.8873 -0.5186 30 1 -0.3633 -0.8926 -0.5091 31 1 1.9721 2.1210 0.0005 32 1 5.6585 1.0775 -0.0073 33 1 5.6313 4.5692 -0.0349 34 1 6.9865 5.7444 -0.0617 35 1 9.0074 7.0831 -0.0695 36 1 11.4841 3.6520 -0.0421 37 1 9.5772 2.1555 -0.0210 38 1 0.8911 -2.5588 -0.4989 39 1 2.5842 -3.1076 -0.4967 40 1 0.7181 -5.9666 0.8849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782059567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:05 Heat of formation + Delta-G solvation = 101.709009 kcal Electronic energy + Delta-G solvation = -24584.091859 eV Core-core repulsion = 20822.220548 eV Total energy + Delta-G solvation = -3761.871311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29992 -40.95053 -40.48450 -37.32366 -36.30365 -35.25249 -33.72436 -32.83113 -32.57018 -32.35712 -29.81014 -28.49248 -27.85297 -25.16181 -24.19189 -23.49882 -22.97070 -21.16744 -20.89323 -19.85699 -18.93154 -18.81140 -18.63925 -17.47869 -16.88983 -16.79731 -16.78187 -16.30776 -16.01954 -15.76470 -15.40253 -14.98871 -14.73467 -14.62081 -14.34065 -13.80152 -13.74187 -13.64337 -13.56304 -13.28440 -13.09689 -12.87208 -12.76382 -12.66476 -12.26606 -12.08949 -11.62698 -11.34594 -11.26349 -10.94529 -10.72615 -10.65775 -10.54114 -9.57346 -9.11144 -8.32004 -8.02895 -6.49259 0.45843 0.66859 1.03073 1.17565 1.37216 1.38479 1.52035 1.64598 1.92578 2.30816 2.33877 2.35157 2.65253 2.75954 2.97380 3.69891 3.82108 4.00225 4.17457 4.31060 4.42806 4.48232 4.57787 4.73270 4.79640 4.90827 4.93050 5.00165 5.03133 5.14474 5.20981 5.29328 5.35289 5.41286 5.55183 5.79181 5.82397 5.95135 6.14294 6.27465 6.28921 6.59058 6.63470 6.94729 7.18579 7.21329 7.61711 8.74543 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.002395 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.696189 B =11690.231114 C =12573.007662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.090 3.910 3 C -0.301 4.301 4 C 0.288 3.712 5 N -0.625 5.625 6 C 0.736 3.264 7 O -0.603 6.603 8 N -0.569 5.569 9 N -0.379 5.379 10 C 0.189 3.811 11 C -0.307 4.307 12 C 0.172 3.828 13 N -0.605 5.605 14 H 0.439 0.561 15 C 0.152 3.848 16 C -0.228 4.228 17 N -0.361 5.361 18 N -0.342 5.342 19 C 0.275 3.725 20 C -0.552 4.552 21 H 0.047 0.953 22 C 0.022 3.978 23 N -0.918 5.918 24 Si 0.973 3.027 25 H -0.276 1.276 26 H -0.265 1.265 27 H -0.273 1.273 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.422 0.578 33 H 0.403 0.597 34 H 0.133 0.867 35 H 0.204 0.796 36 H 0.211 0.789 37 H 0.144 0.856 38 H 0.055 0.945 39 H 0.024 0.976 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.251 25.781 -2.202 34.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.041 4.041 3 C -0.332 4.332 4 C 0.033 3.967 5 N -0.276 5.276 6 C 0.436 3.564 7 O -0.480 6.480 8 N -0.314 5.314 9 N -0.196 5.196 10 C 0.013 3.987 11 C -0.336 4.336 12 C 0.043 3.957 13 N -0.214 5.214 14 H 0.278 0.722 15 C 0.025 3.975 16 C -0.256 4.256 17 N -0.192 5.192 18 N -0.125 5.125 19 C 0.156 3.844 20 C -0.590 4.590 21 H 0.065 0.935 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.797 3.203 25 H -0.201 1.201 26 H -0.190 1.190 27 H -0.199 1.199 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.183 0.817 32 H 0.260 0.740 33 H 0.247 0.753 34 H 0.151 0.849 35 H 0.221 0.779 36 H 0.227 0.773 37 H 0.162 0.838 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.572 23.695 -2.249 32.122 hybrid contribution 0.012 1.047 0.673 1.245 sum 21.584 24.742 -1.576 32.871 Atomic orbital electron populations 1.20473 0.84946 1.04309 1.04048 1.21758 0.96754 0.86257 0.99318 1.21404 0.89743 1.00023 1.21990 1.19047 0.88056 0.89110 1.00492 1.41336 1.07309 1.03802 1.75134 1.15240 0.83232 0.80490 0.77457 1.90889 1.23426 1.74060 1.59583 1.45580 1.01813 1.07803 1.76252 1.75497 0.88390 1.24948 1.30802 1.22488 0.93097 0.91749 0.91371 1.22021 0.99917 0.92237 1.19386 1.22012 0.83391 1.00086 0.90185 1.41639 1.08740 1.06394 1.64590 0.72218 1.22097 1.00962 0.82189 0.92261 1.21393 0.87606 1.00964 1.15613 1.77190 1.00156 1.09616 1.32248 1.48801 1.01542 1.07586 1.54522 1.19276 0.94971 0.72285 0.97880 1.21457 1.47443 0.98436 0.91684 0.93454 1.25746 0.93930 0.95804 1.02409 1.70008 1.45120 1.07415 1.33069 0.85281 0.78564 0.78022 0.78419 1.20062 1.18952 1.19853 0.89682 0.87529 0.91029 0.81663 0.74020 0.75339 0.84925 0.77915 0.77266 0.83844 0.92718 0.95794 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.91 10.11 71.24 0.72 -2.19 16 2 C 0.09 4.20 6.93 41.39 0.29 4.48 16 3 C -0.30 -14.17 9.52 22.11 0.21 -13.96 16 4 C 0.29 14.01 8.11 133.33 1.08 15.09 16 5 N -0.62 -26.20 5.41 -321.15 -1.74 -27.94 16 6 C 0.74 28.96 8.65 179.05 1.55 30.51 16 7 O -0.60 -26.29 14.31 -4.33 -0.06 -26.35 16 8 N -0.57 -17.68 6.19 -184.65 -1.14 -18.82 16 9 N -0.38 -10.95 10.47 -44.51 -0.47 -11.41 16 10 C 0.19 3.87 7.09 43.95 0.31 4.18 16 11 C -0.31 -4.00 9.63 23.76 0.23 -3.77 16 12 C 0.17 0.45 11.15 83.03 0.93 1.38 16 13 N -0.60 0.86 5.28 -194.85 -1.03 -0.17 16 14 H 0.44 -4.27 8.88 -92.71 -0.82 -5.09 16 15 C 0.15 0.36 11.15 83.03 0.93 1.28 16 16 C -0.23 -2.99 10.29 23.76 0.24 -2.75 16 17 N -0.36 -19.31 12.59 -54.45 -0.69 -20.00 16 18 N -0.34 -18.18 3.59 -338.45 -1.22 -19.39 16 19 C 0.27 15.46 5.99 85.63 0.51 15.98 16 20 C -0.55 -32.63 9.39 25.60 0.24 -32.39 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 22 C 0.02 1.25 5.46 84.66 0.46 1.71 16 23 N -0.92 -53.56 13.29 21.45 0.28 -53.27 16 24 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 26 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.07 2.62 7.07 -2.39 -0.02 2.60 16 31 H 0.17 7.56 5.91 -2.91 -0.02 7.55 16 32 H 0.42 16.61 7.86 -92.71 -0.73 15.88 16 33 H 0.40 10.48 6.66 -213.32 -1.42 9.06 16 34 H 0.13 1.75 6.38 -2.91 -0.02 1.73 16 35 H 0.20 -1.23 8.06 -2.91 -0.02 -1.25 16 36 H 0.21 -1.38 8.06 -2.91 -0.02 -1.41 16 37 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.06 3.01 7.04 -2.39 -0.02 3.00 16 39 H 0.02 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -88.66 349.97 1.82 -86.84 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -1.84 Total: 24.06 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 7.70 Total: 19.55 kcal Atomic # 7 Polarization: -145.02 SS G_CDS: -5.99 Total: -151.01 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.06 Total: -26.35 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -88.66 1.82 -86.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782059567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.545 kcal (2) G-P(sol) polarization free energy of solvation -88.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds