Wall clock time and date at job start Tue Mar 31 2020 11:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99669 * 2 1 4 4 N 1.46503 * 109.47084 * 125.00095 * 3 2 1 5 5 C 1.46500 * 119.99920 * 269.99898 * 4 3 2 6 6 C 1.50704 * 109.47033 * 269.99905 * 5 4 3 7 7 H 1.08000 * 119.99997 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99873 * 179.97438 * 6 5 4 9 9 N 1.31522 * 120.00292 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00286 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46934 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47464 * 120.00032 * 10 8 6 13 13 H 1.48497 * 109.47179 * 240.00158 * 10 8 6 14 14 C 1.34778 * 119.99814 * 89.99993 * 4 3 2 15 15 S 1.71204 * 119.99727 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00184 * 359.97438 * 14 4 3 17 17 C 1.39889 * 119.99928 * 185.52598 * 16 14 4 18 18 C 1.38898 * 120.10921 * 221.84524 * 17 16 14 19 19 C 1.37965 * 119.86265 * 180.02562 * 18 17 16 20 20 C 1.38569 * 120.31259 * 359.97438 * 19 18 17 21 21 C 1.38282 * 119.96241 * 0.02562 * 20 19 18 22 22 C 1.38381 * 119.91877 * 359.97438 * 21 20 19 23 23 C 1.51379 * 109.75032 * 180.02562 * 21 20 19 24 24 C 1.54337 * 105.17181 * 342.79529 * 23 21 20 25 25 C 1.51697 * 130.22299 * 179.85496 * 20 19 18 26 26 H 1.07995 * 119.99620 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00387 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47590 * 4.99923 * 3 2 1 30 30 H 1.08996 * 109.47304 * 244.99899 * 3 2 1 31 31 H 1.09001 * 109.47269 * 29.99956 * 5 4 3 32 32 H 1.08996 * 109.47142 * 149.99845 * 5 4 3 33 33 H 0.96996 * 120.00249 * 180.02562 * 9 8 6 34 34 H 0.97000 * 120.00075 * 5.52160 * 16 14 4 35 35 H 1.08007 * 120.06597 * 0.04368 * 18 17 16 36 36 H 1.08003 * 119.84299 * 180.02562 * 19 18 17 37 37 H 1.07999 * 119.92038 * 180.02562 * 22 21 20 38 38 H 1.09000 * 110.30062 * 223.87677 * 23 21 20 39 39 H 1.09000 * 110.38917 * 101.76800 * 23 21 20 40 40 H 1.09009 * 110.81825 * 144.60270 * 24 23 21 41 41 H 1.09000 * 110.82456 * 267.95485 * 24 23 21 42 42 H 1.08992 * 110.25945 * 78.25645 * 25 20 19 43 43 H 1.09003 * 110.49128 * 316.01341 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5588 1.8650 2.4249 6 6 2.8442 3.3438 2.4804 7 1 3.3032 3.8372 1.6365 8 6 2.5183 4.0668 3.6081 9 7 1.9589 3.4660 4.6357 10 14 2.8714 5.8999 3.6768 11 1 3.5004 6.3309 2.4025 12 1 1.6007 6.6416 3.8779 13 1 3.7943 6.1843 4.8048 14 6 4.2497 0.8663 0.9823 15 16 5.3367 0.8971 2.3047 16 7 4.6497 0.3755 -0.2074 17 6 5.9125 -0.2132 -0.3324 18 6 6.6955 0.0478 -1.4496 19 6 7.9400 -0.5359 -1.5678 20 6 8.4130 -1.3812 -0.5769 21 6 7.6359 -1.6429 0.5365 22 6 6.3871 -1.0596 0.6593 23 6 8.3717 -2.5869 1.4634 24 6 9.4852 -3.2154 0.5991 25 6 9.7253 -2.1356 -0.4770 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4027 -0.9313 31 1 1.4887 1.6967 2.5460 32 1 3.0989 1.3604 3.2259 33 1 1.7293 3.9748 5.4290 34 1 4.0619 0.4304 -0.9771 35 1 6.3309 0.7065 -2.2240 36 1 8.5487 -0.3325 -2.4365 37 1 5.7803 -1.2637 1.5291 38 1 7.6962 -3.3596 1.8303 39 1 8.8059 -2.0373 2.2986 40 1 10.3865 -3.3815 1.1892 41 1 9.1445 -4.1459 0.1449 42 1 10.5246 -1.4629 -0.1663 43 1 9.9714 -2.6011 -1.4314 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793246607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:53 Heat of formation + Delta-G solvation = 72.150496 kcal Electronic energy + Delta-G solvation = -23550.936137 eV Core-core repulsion = 20301.783536 eV Total energy + Delta-G solvation = -3249.152601 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.28930 -38.97576 -36.63665 -34.24350 -33.62331 -32.32783 -30.96524 -28.68730 -27.78709 -27.05028 -26.31375 -23.74838 -22.47801 -21.29426 -20.83823 -20.67348 -19.88662 -17.78062 -17.35944 -16.53858 -15.84681 -15.57459 -15.31139 -15.13593 -14.90042 -14.52139 -14.30292 -13.72743 -13.20363 -13.17105 -12.93713 -12.82102 -12.51240 -12.17151 -12.02505 -11.71797 -11.49511 -11.39717 -11.33268 -11.16746 -11.01658 -10.80335 -10.74564 -10.65004 -10.36467 -10.20835 -9.84096 -9.46745 -8.93148 -8.54031 -8.45805 -7.77532 -6.96314 -6.20073 -6.07903 -4.11932 1.31183 1.64391 2.09201 2.18528 2.71815 3.27387 3.29496 3.38700 3.41992 3.76588 3.94581 4.43074 4.50153 4.63068 4.83410 4.97627 5.02943 5.10916 5.15564 5.21563 5.28122 5.32364 5.46414 5.65365 5.68477 5.73289 5.76955 5.80596 5.84667 5.97288 6.03023 6.12707 6.17412 6.42017 6.44366 6.52518 6.60976 6.67660 6.72192 6.89055 7.14856 7.19424 7.44613 7.53912 7.86303 7.89695 8.10516 8.86677 9.51196 11.00628 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.003829 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.965874 B = 7310.187388 C = 8268.074323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.118 3.882 4 N -0.529 5.529 5 C 0.238 3.762 6 C -0.520 4.520 7 H 0.057 0.943 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.900 3.100 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.281 1.281 14 C 0.552 3.448 15 S -0.626 6.626 16 N -0.653 5.653 17 C 0.148 3.852 18 C -0.133 4.133 19 C -0.105 4.105 20 C -0.106 4.106 21 C -0.091 4.091 22 C -0.058 4.058 23 C -0.079 4.079 24 C -0.120 4.120 25 C -0.078 4.078 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.264 0.736 34 H 0.399 0.601 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.003 -12.452 -14.592 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.198 4.198 3 C -0.008 4.008 4 N -0.232 5.232 5 C 0.120 3.880 6 C -0.559 4.559 7 H 0.075 0.925 8 C -0.135 4.135 9 N -0.528 5.528 10 Si 0.727 3.273 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.207 1.207 14 C 0.195 3.805 15 S -0.492 6.492 16 N -0.283 5.283 17 C 0.054 3.946 18 C -0.154 4.154 19 C -0.125 4.125 20 C -0.107 4.107 21 C -0.093 4.093 22 C -0.081 4.081 23 C -0.116 4.116 24 C -0.158 4.158 25 C -0.115 4.115 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.456 -12.280 -13.422 19.304 hybrid contribution -0.823 1.351 -0.972 1.857 sum 5.633 -10.929 -14.394 18.930 Atomic orbital electron populations 1.23899 0.95624 1.02270 0.98431 1.23236 0.96593 0.98157 1.01797 1.20921 0.93510 0.97117 0.89257 1.47931 1.06563 1.53817 1.14851 1.20002 0.95864 0.95060 0.77078 1.21157 1.41097 0.92002 1.01686 0.92526 1.24819 0.94820 0.98746 0.95074 1.69929 1.41647 1.36101 1.05102 0.86418 0.77813 0.84740 0.78300 1.19892 1.21085 1.20679 1.22351 0.87769 0.81091 0.89327 1.93139 1.47340 1.77256 1.31431 1.42332 1.16891 1.59199 1.09848 1.17150 0.85352 0.95330 0.96767 1.20691 0.94325 1.01658 0.98752 1.20182 0.95191 0.98299 0.98803 1.20596 0.96430 0.98623 0.95065 1.20259 0.94165 0.98911 0.95978 1.20824 0.96249 0.93012 0.98006 1.20988 0.96305 0.97025 0.97258 1.22280 0.98632 0.97925 0.96917 1.21046 0.94646 0.96505 0.99304 0.88190 0.87937 0.87414 0.87759 0.90925 0.94293 0.90313 0.92662 0.76201 0.86148 0.86366 0.84012 0.90920 0.90094 0.90847 0.91233 0.90505 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 14.32 29.01 0.42 -1.46 16 2 C -0.18 -2.28 9.85 -36.03 -0.35 -2.63 16 3 C 0.12 1.73 5.66 -5.19 -0.03 1.71 16 4 N -0.53 -10.49 2.44 -178.46 -0.44 -10.92 16 5 C 0.24 5.91 4.92 -5.19 -0.03 5.89 16 6 C -0.52 -14.25 9.39 -34.44 -0.32 -14.57 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 9 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 10 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.55 11.09 7.46 -86.92 -0.65 10.44 16 15 S -0.63 -15.38 24.45 -107.50 -2.63 -18.00 16 16 N -0.65 -10.26 5.20 -11.43 -0.06 -10.32 16 17 C 0.15 2.32 5.91 -83.75 -0.49 1.83 16 18 C -0.13 -1.77 9.97 -39.44 -0.39 -2.17 16 19 C -0.11 -1.30 10.03 -39.56 -0.40 -1.70 16 20 C -0.11 -1.36 6.15 -103.99 -0.64 -2.00 16 21 C -0.09 -1.31 6.13 -104.22 -0.64 -1.95 16 22 C -0.06 -0.96 7.86 -39.34 -0.31 -1.27 16 23 C -0.08 -0.93 6.77 -26.85 -0.18 -1.11 16 24 C -0.12 -1.09 7.07 -25.33 -0.18 -1.27 16 25 C -0.08 -0.76 6.80 -26.69 -0.18 -0.94 16 26 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.10 1.13 7.84 -52.49 -0.41 0.72 16 28 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.10 1.57 7.72 -51.93 -0.40 1.17 16 30 H 0.07 0.86 6.29 -51.93 -0.33 0.54 16 31 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.08 2.23 6.58 -51.93 -0.34 1.89 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.40 4.95 6.52 -40.82 -0.27 4.68 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 37 H 0.14 2.65 6.25 -49.65 -0.31 2.34 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -33.07 366.45 -12.61 -45.68 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.25 Total: 5.76 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -4.48 Total: -9.40 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.24 Total: -46.43 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -15.38 SS G_CDS: -2.63 Total: -18.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.07 -12.61 -45.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793246607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.835 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds