Wall clock time and date at job start Tue Mar 31 2020 11:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99669 * 2 1 4 4 N 1.46503 * 109.47084 * 125.00095 * 3 2 1 5 5 C 1.46500 * 119.99920 * 269.99898 * 4 3 2 6 6 C 1.50704 * 109.47033 * 269.99905 * 5 4 3 7 7 H 1.08000 * 119.99997 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99873 * 179.97438 * 6 5 4 9 9 N 1.31522 * 120.00292 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00286 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46934 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47464 * 120.00032 * 10 8 6 13 13 H 1.48497 * 109.47179 * 240.00158 * 10 8 6 14 14 C 1.34778 * 119.99814 * 89.99993 * 4 3 2 15 15 S 1.71204 * 119.99727 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00184 * 359.97438 * 14 4 3 17 17 C 1.39889 * 119.99928 * 185.52598 * 16 14 4 18 18 C 1.38898 * 120.10921 * 221.84524 * 17 16 14 19 19 C 1.37965 * 119.86265 * 180.02562 * 18 17 16 20 20 C 1.38569 * 120.31259 * 359.97438 * 19 18 17 21 21 C 1.38282 * 119.96241 * 0.02562 * 20 19 18 22 22 C 1.38381 * 119.91877 * 359.97438 * 21 20 19 23 23 C 1.51379 * 109.75032 * 180.02562 * 21 20 19 24 24 C 1.54337 * 105.17181 * 342.79529 * 23 21 20 25 25 C 1.51697 * 130.22299 * 179.85496 * 20 19 18 26 26 H 1.07995 * 119.99620 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00387 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47590 * 4.99923 * 3 2 1 30 30 H 1.08996 * 109.47304 * 244.99899 * 3 2 1 31 31 H 1.09001 * 109.47269 * 29.99956 * 5 4 3 32 32 H 1.08996 * 109.47142 * 149.99845 * 5 4 3 33 33 H 0.96996 * 120.00249 * 180.02562 * 9 8 6 34 34 H 0.97000 * 120.00075 * 5.52160 * 16 14 4 35 35 H 1.08007 * 120.06597 * 0.04368 * 18 17 16 36 36 H 1.08003 * 119.84299 * 180.02562 * 19 18 17 37 37 H 1.07999 * 119.92038 * 180.02562 * 22 21 20 38 38 H 1.09000 * 110.30062 * 223.87677 * 23 21 20 39 39 H 1.09000 * 110.38917 * 101.76800 * 23 21 20 40 40 H 1.09009 * 110.81825 * 144.60270 * 24 23 21 41 41 H 1.09000 * 110.82456 * 267.95485 * 24 23 21 42 42 H 1.08992 * 110.25945 * 78.25645 * 25 20 19 43 43 H 1.09003 * 110.49128 * 316.01341 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5588 1.8650 2.4249 6 6 2.8442 3.3438 2.4804 7 1 3.3032 3.8372 1.6365 8 6 2.5183 4.0668 3.6081 9 7 1.9589 3.4660 4.6357 10 14 2.8714 5.8999 3.6768 11 1 3.5004 6.3309 2.4025 12 1 1.6007 6.6416 3.8779 13 1 3.7943 6.1843 4.8048 14 6 4.2497 0.8663 0.9823 15 16 5.3367 0.8971 2.3047 16 7 4.6497 0.3755 -0.2074 17 6 5.9125 -0.2132 -0.3324 18 6 6.6955 0.0478 -1.4496 19 6 7.9400 -0.5359 -1.5678 20 6 8.4130 -1.3812 -0.5769 21 6 7.6359 -1.6429 0.5365 22 6 6.3871 -1.0596 0.6593 23 6 8.3717 -2.5869 1.4634 24 6 9.4852 -3.2154 0.5991 25 6 9.7253 -2.1356 -0.4770 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4027 -0.9313 31 1 1.4887 1.6967 2.5460 32 1 3.0989 1.3604 3.2259 33 1 1.7293 3.9748 5.4290 34 1 4.0619 0.4304 -0.9771 35 1 6.3309 0.7065 -2.2240 36 1 8.5487 -0.3325 -2.4365 37 1 5.7803 -1.2637 1.5291 38 1 7.6962 -3.3596 1.8303 39 1 8.8059 -2.0373 2.2986 40 1 10.3865 -3.3815 1.1892 41 1 9.1445 -4.1459 0.1449 42 1 10.5246 -1.4629 -0.1663 43 1 9.9714 -2.6011 -1.4314 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793246607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:52 Heat of formation + Delta-G solvation = 55.567849 kcal Electronic energy + Delta-G solvation = -23551.655214 eV Core-core repulsion = 20301.783536 eV Total energy + Delta-G solvation = -3249.871679 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49267 -40.30318 -37.87079 -35.35705 -35.22141 -34.01806 -32.04732 -30.10170 -29.21310 -28.15133 -27.65278 -25.48847 -23.82352 -22.60702 -22.05520 -21.58915 -21.01380 -19.19871 -18.82910 -18.52443 -17.12331 -16.71945 -16.52196 -16.41234 -16.13630 -15.93211 -15.88798 -14.93408 -14.62698 -14.32464 -14.22508 -13.97282 -13.66469 -13.49229 -13.42806 -13.20732 -12.93171 -12.70944 -12.63252 -12.37829 -12.34489 -12.24171 -12.12787 -11.96659 -11.92029 -11.66212 -11.55661 -10.64439 -10.52106 -10.36867 -9.69134 -9.04239 -8.80551 -8.21929 -8.03120 -6.33212 0.02283 0.54148 0.71592 0.91819 1.28544 1.35511 1.40421 1.49387 1.72562 2.33347 2.43901 2.84625 3.11323 3.57791 3.73157 3.74120 3.90706 4.10187 4.16718 4.23445 4.24156 4.32433 4.48176 4.55814 4.63268 4.75274 4.85355 4.90318 4.91688 5.00528 5.04675 5.07263 5.16691 5.23622 5.32423 5.37300 5.43462 5.48393 5.55921 5.63749 5.66059 5.76599 5.80214 5.89280 5.99075 6.16168 6.41422 6.71263 7.33391 8.86179 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.003829 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.965874 B = 7310.187388 C = 8268.074323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.196 4.196 3 C 0.114 3.886 4 N -0.530 5.530 5 C 0.259 3.741 6 C -0.527 4.527 7 H 0.049 0.951 8 C 0.018 3.982 9 N -0.922 5.922 10 Si 0.962 3.038 11 H -0.270 1.270 12 H -0.268 1.268 13 H -0.287 1.287 14 C 0.575 3.425 15 S -0.730 6.730 16 N -0.623 5.623 17 C 0.117 3.883 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.104 4.104 21 C -0.112 4.112 22 C -0.079 4.079 23 C -0.084 4.084 24 C -0.111 4.111 25 C -0.076 4.076 26 H 0.121 0.879 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.266 0.734 34 H 0.419 0.581 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.714 -12.593 -18.048 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.216 4.216 3 C -0.010 4.010 4 N -0.232 5.232 5 C 0.138 3.862 6 C -0.566 4.566 7 H 0.067 0.933 8 C -0.182 4.182 9 N -0.562 5.562 10 Si 0.787 3.213 11 H -0.195 1.195 12 H -0.193 1.193 13 H -0.213 1.213 14 C 0.213 3.787 15 S -0.598 6.598 16 N -0.253 5.253 17 C 0.024 3.976 18 C -0.147 4.147 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.114 4.114 22 C -0.102 4.102 23 C -0.122 4.122 24 C -0.148 4.148 25 C -0.113 4.113 26 H 0.139 0.861 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.261 0.739 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.158 -12.456 -16.973 22.237 hybrid contribution -1.066 1.284 -0.010 1.669 sum 6.092 -11.172 -16.983 21.221 Atomic orbital electron populations 1.24156 0.95175 1.03546 0.95576 1.23093 0.97039 0.97121 1.04298 1.21249 0.93108 0.98337 0.88314 1.47727 1.07185 1.53295 1.14970 1.19368 0.94631 0.93714 0.78478 1.21357 1.40525 0.93204 1.01466 0.93263 1.25629 0.94702 1.03047 0.94788 1.70034 1.42692 1.37752 1.05672 0.85456 0.78061 0.79831 0.77956 1.19480 1.19309 1.21287 1.21706 0.86857 0.80773 0.89333 1.93300 1.50165 1.81011 1.35337 1.42110 1.17401 1.57128 1.08682 1.17415 0.85745 0.96467 0.98021 1.21012 0.94302 1.01401 0.98004 1.20637 0.94942 0.97111 0.99624 1.21103 0.97323 0.97998 0.94062 1.20610 0.93745 0.99497 0.97539 1.20704 0.97216 0.94758 0.97504 1.21087 0.97180 0.96674 0.97218 1.22295 0.98107 0.98026 0.96414 1.21149 0.92931 0.96438 1.00762 0.86092 0.87479 0.87192 0.87955 0.87717 0.94860 0.94414 0.92477 0.73859 0.83455 0.82824 0.87434 0.91025 0.91303 0.88980 0.89961 0.89726 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 14.32 67.78 0.97 -2.07 16 2 C -0.20 -4.73 9.85 25.64 0.25 -4.48 16 3 C 0.11 3.21 5.66 85.63 0.48 3.70 16 4 N -0.53 -21.41 2.44 -718.52 -1.75 -23.16 16 5 C 0.26 13.37 4.92 85.63 0.42 13.79 16 6 C -0.53 -29.53 9.39 25.60 0.24 -29.29 16 7 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 8 C 0.02 1.03 5.46 84.65 0.46 1.49 16 9 N -0.92 -55.18 13.29 21.45 0.28 -54.90 16 10 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 14 C 0.58 23.81 7.46 179.05 1.34 25.15 16 15 S -0.73 -38.35 24.45 -56.49 -1.38 -39.73 16 16 N -0.62 -19.39 5.20 -190.07 -0.99 -20.37 16 17 C 0.12 3.64 5.91 38.13 0.23 3.87 16 18 C -0.13 -3.08 9.97 22.36 0.22 -2.86 16 19 C -0.10 -2.25 10.03 22.28 0.22 -2.03 16 20 C -0.10 -2.45 6.15 -19.46 -0.12 -2.57 16 21 C -0.11 -3.27 6.13 -19.60 -0.12 -3.39 16 22 C -0.08 -2.76 7.86 22.43 0.18 -2.58 16 23 C -0.08 -2.02 6.77 30.52 0.21 -1.81 16 24 C -0.11 -1.77 7.07 31.50 0.22 -1.55 16 25 C -0.08 -1.24 6.80 30.62 0.21 -1.03 16 26 H 0.12 2.02 8.06 -2.91 -0.02 2.00 16 27 H 0.11 2.14 7.84 -2.91 -0.02 2.11 16 28 H 0.11 2.63 8.06 -2.91 -0.02 2.60 16 29 H 0.10 2.97 7.72 -2.39 -0.02 2.95 16 30 H 0.10 2.23 6.29 -2.39 -0.02 2.21 16 31 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 32 H 0.04 2.29 6.58 -2.39 -0.02 2.27 16 33 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.42 9.60 6.52 -92.71 -0.60 9.00 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.11 4.44 6.25 -4.71 -0.03 4.41 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -77.09 366.45 3.99 -73.09 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.39 Total: 23.31 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 5.41 Total: -5.65 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -2.46 Total: -98.43 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: -38.35 SS G_CDS: -1.38 Total: -39.73 kcal Total: -77.09 3.99 -73.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793246607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.660 kcal (2) G-P(sol) polarization free energy of solvation -77.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds