Wall clock time and date at job start Tue Mar 31 2020 11:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47295 * 2 1 4 4 C 1.35314 * 126.13081 * 84.99489 * 3 2 1 5 5 C 1.39868 * 107.91903 * 180.02562 * 4 3 2 6 6 C 1.50704 * 125.89667 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47108 * 94.99630 * 6 5 4 8 8 S 1.65608 * 119.99652 * 164.99992 * 7 6 5 9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 6 10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 6 11 11 N 1.65601 * 107.21642 * 65.00401 * 8 7 6 12 12 C 1.46507 * 119.99820 * 269.99450 * 11 8 7 13 13 C 1.46499 * 120.00284 * 90.00037 * 11 8 7 14 14 H 1.09002 * 109.46946 * 359.97438 * 13 11 8 15 15 C 1.52997 * 109.47189 * 119.99971 * 13 11 8 16 16 C 1.50703 * 109.46853 * 239.99649 * 13 11 8 17 17 H 1.07999 * 120.00024 * 0.02562 * 16 13 11 18 18 C 1.37880 * 119.99936 * 179.97438 * 16 13 11 19 19 N 1.31509 * 119.99604 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 119.99964 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46999 * 60.00354 * 20 18 16 22 22 H 1.48502 * 109.46989 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47286 * 300.00043 * 20 18 16 24 24 N 1.30833 * 108.20635 * 0.26426 * 5 4 3 25 25 N 1.34947 * 126.12468 * 265.04683 * 3 2 1 26 26 H 0.97001 * 126.03704 * 359.95476 * 25 3 2 27 27 H 1.08993 * 109.47259 * 60.00315 * 1 2 3 28 28 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47155 * 300.00045 * 1 2 3 30 30 H 1.08997 * 109.46805 * 239.99264 * 2 1 3 31 31 H 1.09002 * 109.46978 * 119.99572 * 2 1 3 32 32 H 1.07995 * 126.03554 * 0.05860 * 4 3 2 33 33 H 1.09005 * 109.46813 * 334.99952 * 6 5 4 34 34 H 1.09000 * 109.47056 * 215.00319 * 6 5 4 35 35 H 0.96997 * 120.00126 * 344.99915 * 7 6 5 36 36 H 1.09004 * 109.46614 * 90.00144 * 12 11 8 37 37 H 1.08991 * 109.47229 * 210.00435 * 12 11 8 38 38 H 1.08997 * 109.46913 * 330.00633 * 12 11 8 39 39 H 1.09002 * 109.47112 * 299.99939 * 15 13 11 40 40 H 1.08999 * 109.47400 * 59.99409 * 15 13 11 41 41 H 1.08996 * 109.47158 * 180.02562 * 15 13 11 42 42 H 0.97003 * 120.00135 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2084 2.2048 1.0887 5 6 2.6867 3.4449 0.6532 6 6 3.0214 4.6215 1.5334 7 7 4.4537 4.6098 1.8406 8 16 5.1769 5.9609 2.4684 9 8 6.5401 5.6225 2.6844 10 8 4.7662 7.0508 1.6545 11 7 4.5167 6.2197 3.9649 12 6 3.3241 7.0593 4.1041 13 6 5.1251 5.6093 5.1496 14 1 5.9953 5.0248 4.8508 15 6 5.5573 6.7069 6.1238 16 6 4.1216 4.7078 5.8216 17 1 3.1300 4.6001 5.4074 18 6 4.4698 4.0199 6.9646 19 7 5.6774 4.1507 7.4686 20 14 3.2262 2.9020 7.7972 21 1 2.8068 1.8369 6.8511 22 1 3.8428 2.2833 8.9981 23 1 2.0402 3.6974 8.2044 24 7 2.7886 3.4087 -0.6506 25 7 2.3863 2.1395 -1.0859 26 1 2.3630 1.8325 -2.0058 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0144 1.9226 2.1129 33 1 2.4506 4.5562 2.4597 34 1 2.7684 5.5465 1.0152 35 1 4.9785 3.8107 1.6763 36 1 2.4315 6.4395 4.0185 37 1 3.3353 7.5476 5.0784 38 1 3.3183 7.8151 3.3188 39 1 6.2831 7.3590 5.6378 40 1 4.6869 7.2911 6.4225 41 1 6.0104 6.2528 7.0050 42 1 5.9225 3.6665 8.2726 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800914218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:59 Heat of formation + Delta-G solvation = -10.198461 kcal Electronic energy + Delta-G solvation = -25130.093668 eV Core-core repulsion = 21466.520885 eV Total energy + Delta-G solvation = -3663.572783 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37261 -36.65324 -36.12326 -35.43770 -35.19841 -34.02371 -32.56979 -31.17478 -29.15364 -29.03421 -26.15160 -25.49526 -25.10503 -24.05139 -20.75629 -20.52805 -20.13447 -18.75482 -17.53000 -17.16576 -16.70168 -16.34148 -15.88432 -15.09084 -14.88387 -14.62749 -14.27513 -14.23406 -13.56246 -13.49216 -13.37814 -13.17456 -12.80132 -12.70906 -12.58785 -11.91783 -11.83574 -11.73371 -11.54817 -11.46545 -11.31882 -11.31595 -11.12554 -10.96858 -10.80647 -10.64192 -10.43401 -10.24401 -10.00042 -9.50960 -9.33993 -9.07559 -8.69194 -8.45641 -7.92991 -6.06492 -4.14702 1.25310 1.76458 2.63979 2.72447 3.26765 3.32806 3.33427 3.65745 4.20273 4.31685 4.37585 4.55420 4.65511 4.92220 5.01009 5.13947 5.23987 5.31114 5.42142 5.47215 5.54945 5.71583 5.74421 5.80281 5.83757 6.07515 6.12339 6.22866 6.38777 6.55526 6.68637 6.87576 6.90479 7.13387 7.15878 7.28479 7.56570 7.60375 7.66986 7.81814 8.07539 8.29296 8.88050 9.51320 10.98570 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.004900 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.093589 B = 5712.515818 C = 7603.314386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C 0.083 3.917 4 C -0.250 4.250 5 C 0.075 3.925 6 C 0.205 3.795 7 N -1.122 6.122 8 S 2.785 3.215 9 O -0.980 6.980 10 O -0.998 6.998 11 N -0.990 5.990 12 C 0.097 3.903 13 C 0.268 3.732 14 H 0.059 0.941 15 C -0.146 4.146 16 C -0.523 4.523 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 N -0.278 5.278 25 N -0.475 5.475 26 H 0.435 0.565 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.414 0.586 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.012 0.988 40 H 0.033 0.967 41 H 0.093 0.907 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 -6.237 -12.704 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C -0.045 4.045 4 C -0.280 4.280 5 C -0.093 4.093 6 C 0.077 3.923 7 N -0.881 5.881 8 S 2.794 3.206 9 O -0.964 6.964 10 O -0.981 6.981 11 N -0.832 5.832 12 C -0.050 4.050 13 C 0.165 3.835 14 H 0.077 0.923 15 C -0.206 4.206 16 C -0.563 4.563 17 H 0.081 0.919 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 N -0.102 5.102 25 N -0.184 5.184 26 H 0.279 0.721 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.170 0.830 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.247 0.753 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.752 -4.922 -13.966 17.200 hybrid contribution -1.004 -1.968 0.918 2.392 sum -9.756 -6.889 -13.048 17.688 Atomic orbital electron populations 1.21755 0.93887 1.02220 1.02692 1.20226 0.96578 0.89292 1.04013 1.21100 1.00063 0.95495 0.87834 1.21263 1.13094 0.93912 0.99709 1.22222 0.99221 0.96401 0.91443 1.19444 0.81798 0.94494 0.96603 1.56007 1.17092 1.33418 1.81547 1.01717 0.73156 0.72860 0.72901 1.93596 1.32599 1.84296 1.85923 1.93530 1.83954 1.52429 1.68188 1.57681 1.40574 1.61354 1.23622 1.21303 0.86908 0.93734 1.03009 1.18723 0.93450 0.90817 0.80504 0.92337 1.22068 0.98533 0.97768 1.02190 1.21342 0.99146 1.25811 1.09958 0.91942 1.24924 0.95325 0.96715 0.96927 1.69871 1.18457 1.42124 1.22161 0.86597 0.81295 0.80812 0.78856 1.20268 1.21367 1.20321 1.77363 1.21763 0.98243 1.12787 1.46319 1.53302 1.10237 1.08543 0.72117 0.92769 0.91789 0.91697 0.90791 0.88878 0.82996 0.89347 0.89420 0.75300 0.93820 0.90590 0.91983 0.96842 0.94801 0.88889 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.06 -0.43 6.48 -27.89 -0.18 -0.61 16 3 C 0.08 0.87 6.46 -82.27 -0.53 0.34 16 4 C -0.25 -3.18 10.65 -40.01 -0.43 -3.60 16 5 C 0.08 1.08 6.61 -82.41 -0.54 0.53 16 6 C 0.20 3.03 6.80 -5.19 -0.04 3.00 16 7 N -1.12 -18.77 6.05 -11.65 -0.07 -18.84 16 8 S 2.79 55.27 6.14 -107.50 -0.66 54.61 16 9 O -0.98 -22.71 16.70 -57.17 -0.95 -23.66 16 10 O -1.00 -20.68 16.21 -57.17 -0.93 -21.61 16 11 N -0.99 -20.22 3.12 -115.85 -0.36 -20.59 16 12 C 0.10 1.68 9.90 59.85 0.59 2.27 16 13 C 0.27 6.48 2.62 -69.08 -0.18 6.29 16 14 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 15 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 16 C -0.52 -13.17 8.37 -34.44 -0.29 -13.45 16 17 H 0.06 1.51 7.65 -52.49 -0.40 1.11 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -24.22 11.32 55.43 0.63 -23.59 16 20 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 N -0.28 -4.00 12.70 33.67 0.43 -3.57 16 25 N -0.48 -5.12 7.36 33.47 0.25 -4.87 16 26 H 0.44 3.22 8.96 -182.61 -1.64 1.59 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.27 7.75 -51.93 -0.40 0.87 16 35 H 0.41 6.59 8.64 -34.48 -0.30 6.29 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.32 6.43 -51.93 -0.33 0.98 16 38 H 0.06 0.99 7.02 -51.93 -0.36 0.62 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 41 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 42 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -32.85 360.10 -9.65 -42.50 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.40 Total: 6.49 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.99 Total: -7.36 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: 0.87 Total: -71.45 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.88 Total: -45.27 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.66 Total: 54.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.85 -9.65 -42.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800914218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.303 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds