Wall clock time and date at job start Tue Mar 31 2020 11:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47295 * 2 1 4 4 C 1.35314 * 126.13081 * 84.99489 * 3 2 1 5 5 C 1.39868 * 107.91903 * 180.02562 * 4 3 2 6 6 C 1.50704 * 125.89667 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47108 * 94.99630 * 6 5 4 8 8 S 1.65608 * 119.99652 * 164.99992 * 7 6 5 9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 6 10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 6 11 11 N 1.65601 * 107.21642 * 65.00401 * 8 7 6 12 12 C 1.46507 * 119.99820 * 269.99450 * 11 8 7 13 13 C 1.46499 * 120.00284 * 90.00037 * 11 8 7 14 14 H 1.09002 * 109.46946 * 359.97438 * 13 11 8 15 15 C 1.52997 * 109.47189 * 119.99971 * 13 11 8 16 16 C 1.50703 * 109.46853 * 239.99649 * 13 11 8 17 17 H 1.07999 * 120.00024 * 0.02562 * 16 13 11 18 18 C 1.37880 * 119.99936 * 179.97438 * 16 13 11 19 19 N 1.31509 * 119.99604 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 119.99964 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46999 * 60.00354 * 20 18 16 22 22 H 1.48502 * 109.46989 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47286 * 300.00043 * 20 18 16 24 24 N 1.30833 * 108.20635 * 0.26426 * 5 4 3 25 25 N 1.34947 * 126.12468 * 265.04683 * 3 2 1 26 26 H 0.97001 * 126.03704 * 359.95476 * 25 3 2 27 27 H 1.08993 * 109.47259 * 60.00315 * 1 2 3 28 28 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47155 * 300.00045 * 1 2 3 30 30 H 1.08997 * 109.46805 * 239.99264 * 2 1 3 31 31 H 1.09002 * 109.46978 * 119.99572 * 2 1 3 32 32 H 1.07995 * 126.03554 * 0.05860 * 4 3 2 33 33 H 1.09005 * 109.46813 * 334.99952 * 6 5 4 34 34 H 1.09000 * 109.47056 * 215.00319 * 6 5 4 35 35 H 0.96997 * 120.00126 * 344.99915 * 7 6 5 36 36 H 1.09004 * 109.46614 * 90.00144 * 12 11 8 37 37 H 1.08991 * 109.47229 * 210.00435 * 12 11 8 38 38 H 1.08997 * 109.46913 * 330.00633 * 12 11 8 39 39 H 1.09002 * 109.47112 * 299.99939 * 15 13 11 40 40 H 1.08999 * 109.47400 * 59.99409 * 15 13 11 41 41 H 1.08996 * 109.47158 * 180.02562 * 15 13 11 42 42 H 0.97003 * 120.00135 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2084 2.2048 1.0887 5 6 2.6867 3.4449 0.6532 6 6 3.0214 4.6215 1.5334 7 7 4.4537 4.6098 1.8406 8 16 5.1769 5.9609 2.4684 9 8 6.5401 5.6225 2.6844 10 8 4.7662 7.0508 1.6545 11 7 4.5167 6.2197 3.9649 12 6 3.3241 7.0593 4.1041 13 6 5.1251 5.6093 5.1496 14 1 5.9953 5.0248 4.8508 15 6 5.5573 6.7069 6.1238 16 6 4.1216 4.7078 5.8216 17 1 3.1300 4.6001 5.4074 18 6 4.4698 4.0199 6.9646 19 7 5.6774 4.1507 7.4686 20 14 3.2262 2.9020 7.7972 21 1 2.8068 1.8369 6.8511 22 1 3.8428 2.2833 8.9981 23 1 2.0402 3.6974 8.2044 24 7 2.7886 3.4087 -0.6506 25 7 2.3863 2.1395 -1.0859 26 1 2.3630 1.8325 -2.0058 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0144 1.9226 2.1129 33 1 2.4506 4.5562 2.4597 34 1 2.7684 5.5465 1.0152 35 1 4.9785 3.8107 1.6763 36 1 2.4315 6.4395 4.0185 37 1 3.3353 7.5476 5.0784 38 1 3.3183 7.8151 3.3188 39 1 6.2831 7.3590 5.6378 40 1 4.6869 7.2911 6.4225 41 1 6.0104 6.2528 7.0050 42 1 5.9225 3.6665 8.2726 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800914218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:58 Heat of formation + Delta-G solvation = -34.964147 kcal Electronic energy + Delta-G solvation = -25131.167588 eV Core-core repulsion = 21466.520885 eV Total energy + Delta-G solvation = -3664.646704 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.30101 -38.34106 -37.85676 -36.90092 -36.61744 -34.77615 -34.45100 -32.19384 -30.86154 -29.97399 -27.39331 -27.18518 -26.87488 -24.66965 -22.56495 -21.38750 -21.21570 -20.30493 -18.77360 -18.42935 -18.25493 -18.20046 -17.35604 -16.72070 -16.04353 -15.68968 -15.40632 -15.11782 -15.05714 -14.77561 -14.59946 -14.52990 -14.34136 -13.74831 -13.60901 -13.43087 -13.30872 -13.18694 -13.13013 -12.91174 -12.86850 -12.70496 -12.55767 -12.37485 -12.19625 -12.11228 -11.99995 -11.82177 -11.55642 -11.12500 -10.54060 -10.44272 -10.42673 -9.62646 -9.59590 -8.02597 -6.17187 -0.31652 0.83039 1.51570 1.52343 1.58443 1.60271 1.89555 2.16944 2.51807 2.65228 3.26050 3.38822 3.55638 3.69841 4.03716 4.15931 4.27142 4.29370 4.40787 4.68002 4.72683 4.77817 4.79373 4.82212 4.89973 4.94924 5.01096 5.06809 5.11074 5.22355 5.23372 5.29125 5.38021 5.58289 5.66534 5.74474 5.90286 6.03676 6.17799 6.35402 6.39754 6.65639 6.91997 7.52398 9.01833 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.004900 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.093589 B = 5712.515818 C = 7603.314386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C 0.101 3.899 4 C -0.275 4.275 5 C 0.061 3.939 6 C 0.201 3.799 7 N -1.115 6.115 8 S 2.803 3.197 9 O -1.017 7.017 10 O -1.006 7.006 11 N -0.993 5.993 12 C 0.090 3.910 13 C 0.273 3.727 14 H 0.024 0.976 15 C -0.141 4.141 16 C -0.525 4.525 17 H 0.073 0.927 18 C 0.015 3.985 19 N -0.921 5.921 20 Si 0.958 3.042 21 H -0.268 1.268 22 H -0.293 1.293 23 H -0.270 1.270 24 N -0.311 5.311 25 N -0.463 5.463 26 H 0.450 0.550 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.155 0.845 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.418 0.582 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.018 0.982 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 -7.600 -13.517 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.029 4.029 4 C -0.305 4.305 5 C -0.106 4.106 6 C 0.074 3.926 7 N -0.876 5.876 8 S 2.811 3.189 9 O -1.002 7.002 10 O -0.989 6.989 11 N -0.836 5.836 12 C -0.056 4.056 13 C 0.169 3.831 14 H 0.042 0.958 15 C -0.200 4.200 16 C -0.565 4.565 17 H 0.091 0.909 18 C -0.185 4.185 19 N -0.560 5.560 20 Si 0.784 3.216 21 H -0.193 1.193 22 H -0.219 1.219 23 H -0.195 1.195 24 N -0.136 5.136 25 N -0.174 5.174 26 H 0.296 0.704 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.173 0.827 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.252 0.748 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.980 -6.265 -14.810 19.472 hybrid contribution -0.348 -1.573 1.063 1.930 sum -11.328 -7.838 -13.747 19.461 Atomic orbital electron populations 1.21738 0.93170 1.03236 1.02158 1.20382 0.97004 0.87013 1.05477 1.21591 0.97881 0.96542 0.86877 1.21426 1.14468 0.93896 1.00666 1.22154 1.00095 0.96760 0.91552 1.19583 0.80345 0.95214 0.97457 1.55720 1.18220 1.32628 1.81006 1.01021 0.72252 0.72971 0.72628 1.93541 1.35306 1.84918 1.86404 1.93513 1.83916 1.53271 1.68213 1.57537 1.41515 1.61884 1.22624 1.21538 0.86354 0.94080 1.03595 1.18408 0.92485 0.90747 0.81509 0.95847 1.21963 0.99074 0.97738 1.01263 1.21613 0.99541 1.25541 1.09780 0.90909 1.25698 0.96865 0.98182 0.97726 1.70021 1.20263 1.43160 1.22551 0.85607 0.79140 0.79174 0.77651 1.19324 1.21921 1.19459 1.77275 1.23129 1.00246 1.12973 1.46332 1.52236 1.09235 1.09568 0.70364 0.92761 0.90018 0.92808 0.88483 0.88277 0.82731 0.88249 0.89290 0.74835 0.91763 0.90625 0.90484 0.96301 0.93409 0.91195 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 71.98 0.71 -0.71 16 2 C -0.06 -0.65 6.48 29.85 0.19 -0.46 16 3 C 0.10 1.89 6.46 41.40 0.27 2.15 16 4 C -0.28 -6.62 10.65 21.99 0.23 -6.38 16 5 C 0.06 1.70 6.61 43.10 0.29 1.99 16 6 C 0.20 5.80 6.80 85.64 0.58 6.38 16 7 N -1.11 -37.01 6.05 -190.78 -1.15 -38.17 16 8 S 2.80 111.24 6.14 -56.49 -0.35 110.89 16 9 O -1.02 -48.22 16.70 -128.00 -2.14 -50.35 16 10 O -1.01 -41.09 16.21 -128.00 -2.07 -43.16 16 11 N -0.99 -40.11 3.12 -520.44 -1.62 -41.73 16 12 C 0.09 2.96 9.90 127.77 1.27 4.22 16 13 C 0.27 13.27 2.62 44.25 0.12 13.39 16 14 H 0.02 1.31 6.91 -2.39 -0.02 1.30 16 15 C -0.14 -6.71 8.95 71.98 0.64 -6.06 16 16 C -0.53 -26.12 8.37 25.60 0.21 -25.91 16 17 H 0.07 3.40 7.65 -2.91 -0.02 3.37 16 18 C 0.01 0.75 5.30 84.66 0.45 1.20 16 19 N -0.92 -50.85 11.32 21.45 0.24 -50.61 16 20 Si 0.96 40.53 29.54 68.60 2.03 42.55 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 N -0.31 -8.66 12.70 -47.38 -0.60 -9.26 16 25 N -0.46 -9.13 7.36 -48.01 -0.35 -9.48 16 26 H 0.45 5.67 8.96 -213.33 -1.91 3.76 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.09 2.51 7.75 -2.39 -0.02 2.49 16 35 H 0.42 13.35 8.64 -96.74 -0.84 12.52 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.50 6.43 -2.39 -0.02 2.48 16 38 H 0.08 2.31 7.02 -2.39 -0.02 2.29 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 2.08 6.66 -2.39 -0.02 2.06 16 41 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 42 H 0.26 13.89 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -69.98 360.10 -2.76 -72.73 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -1.70 Total: 26.78 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.96 Total: -10.18 kcal Atomic # 7 Polarization: -145.77 SS G_CDS: -3.49 Total: -149.26 kcal Atomic # 8 Polarization: -89.30 SS G_CDS: -4.21 Total: -93.51 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 111.24 SS G_CDS: -0.35 Total: 110.89 kcal Total: -69.98 -2.76 -72.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800914218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.771 kcal (2) G-P(sol) polarization free energy of solvation -69.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds