Wall clock time and date at job start Tue Mar 31 2020 11:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47215 * 119.99627 * 2 1 3 5 5 N 1.46491 * 109.47641 * 175.00150 * 4 2 1 6 6 C 1.34219 * 125.74727 * 124.99796 * 5 4 2 7 7 C 1.38128 * 107.41210 * 179.97438 * 6 5 4 8 8 C 1.47285 * 126.42705 * 180.26386 * 7 6 5 9 9 O 1.21523 * 119.99764 * 179.68225 * 8 7 6 10 10 O 1.34756 * 120.00378 * 359.68737 * 8 7 6 11 11 C 1.45195 * 117.00317 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47237 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47345 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99941 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00318 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00121 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00339 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46619 * 60.00342 * 17 15 13 19 19 H 1.48491 * 109.47445 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47422 * 300.00647 * 17 15 13 21 21 C 1.41345 * 107.14311 * 359.97438 * 7 6 5 22 22 C 1.50696 * 125.99069 * 180.02562 * 21 7 6 23 23 F 1.39903 * 109.47104 * 210.00178 * 22 21 7 24 24 F 1.39900 * 109.47463 * 329.99975 * 22 21 7 25 25 N 1.30433 * 108.01375 * 0.02562 * 21 7 6 26 26 H 1.08997 * 109.46983 * 299.99829 * 1 2 3 27 27 H 1.08995 * 109.46849 * 60.00791 * 1 2 3 28 28 H 1.09004 * 109.46567 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47424 * 239.99586 * 2 1 3 30 30 H 1.09002 * 109.47254 * 59.99482 * 3 2 1 31 31 H 1.08999 * 109.47260 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47040 * 300.00146 * 3 2 1 33 33 H 1.09010 * 109.46923 * 54.99845 * 4 2 1 34 34 H 1.09005 * 109.47349 * 295.00676 * 4 2 1 35 35 H 1.08005 * 126.29425 * 0.02562 * 6 5 4 36 36 H 1.08994 * 109.47072 * 299.99989 * 11 10 8 37 37 H 1.09003 * 109.46811 * 59.99897 * 11 10 8 38 38 H 1.08999 * 109.47325 * 300.00586 * 12 11 10 39 39 H 1.09001 * 109.46585 * 60.00220 * 12 11 10 40 40 H 0.96995 * 120.00626 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.47291 * 90.00098 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.3555 -0.3963 2.1313 7 6 5.6327 -0.6849 1.6915 8 6 6.8890 -0.3969 2.4042 9 8 7.9539 -0.7085 1.9085 10 8 6.8578 0.2120 3.6059 11 6 8.1340 0.4639 4.2507 12 6 7.8987 1.1570 5.5943 13 6 9.2233 1.4190 6.2633 14 1 10.1414 1.1214 5.7784 15 6 9.2634 2.0396 7.4937 16 7 8.1456 2.4025 8.0840 17 14 10.9054 2.3638 8.3233 18 1 11.7353 3.2364 7.4542 19 1 10.6770 3.0366 9.6272 20 1 11.6094 1.0758 8.5480 21 6 5.5073 -1.3146 0.4323 22 6 6.6419 -1.8086 -0.4277 23 9 6.2741 -1.7304 -1.7752 24 9 7.7738 -1.0167 -0.2066 25 7 4.2374 -1.3929 0.1451 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6054 -1.7198 1.2953 34 1 1.7516 -0.1582 2.1371 35 1 4.0934 0.0860 3.0615 36 1 8.6510 -0.4815 4.4148 37 1 8.7428 1.1051 3.6132 38 1 7.3817 2.1024 5.4298 39 1 7.2897 0.5161 6.2319 40 1 8.1737 2.8388 8.9498 41 1 6.8674 -2.8440 -0.1721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835265843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:44 Heat of formation + Delta-G solvation = -146.246522 kcal Electronic energy + Delta-G solvation = -26307.813224 eV Core-core repulsion = 22052.207816 eV Total energy + Delta-G solvation = -4255.605407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.96760 -47.97959 -42.74642 -40.92069 -37.70138 -37.31960 -35.40591 -33.78504 -32.58310 -31.57089 -29.10693 -28.10504 -27.37022 -26.44490 -24.22584 -22.90006 -22.18146 -21.80959 -20.57788 -19.12990 -18.63199 -18.54772 -17.99181 -17.91062 -17.44991 -17.15201 -16.95735 -16.66726 -16.41895 -15.60255 -15.05558 -15.02565 -14.68296 -14.56470 -14.43571 -14.33730 -14.13527 -13.97298 -13.83100 -13.22664 -13.07712 -13.02953 -12.92978 -12.63038 -12.55985 -12.53709 -12.25466 -12.22859 -12.01734 -11.80412 -11.64274 -11.47129 -11.39400 -11.27331 -10.78358 -10.57752 -10.02644 -8.24727 -6.36934 0.22085 0.52235 1.00849 1.42862 1.46013 1.53626 1.81653 2.01828 2.41987 2.52784 2.96085 3.09888 3.24612 3.62762 3.72771 3.80430 3.86103 3.92394 4.05881 4.22491 4.24831 4.29480 4.35757 4.42317 4.49972 4.59175 4.75007 4.76397 4.84040 4.87634 4.98978 5.17476 5.30018 5.31546 5.36879 5.52188 5.58545 5.66305 5.78547 6.10131 6.12181 6.75483 6.86145 7.32428 8.87553 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.003009 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.441380 B = 9303.863868 C =10912.183458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.150 4.150 4 C 0.118 3.882 5 N -0.334 5.334 6 C 0.154 3.846 7 C -0.280 4.280 8 C 0.526 3.474 9 O -0.527 6.527 10 O -0.359 6.359 11 C 0.094 3.906 12 C 0.034 3.966 13 C -0.551 4.551 14 H 0.063 0.937 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.266 1.266 21 C 0.043 3.957 22 C 0.350 3.650 23 F -0.199 7.199 24 F -0.183 7.183 25 N -0.266 5.266 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.138 0.862 35 H 0.228 0.772 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.008 0.992 39 H 0.010 0.990 40 H 0.268 0.732 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.769 -7.696 -15.739 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.208 4.208 4 C 0.000 4.000 5 N -0.111 5.111 6 C 0.001 3.999 7 C -0.293 4.293 8 C 0.371 3.629 9 O -0.418 6.418 10 O -0.276 6.276 11 C 0.021 3.979 12 C -0.003 4.003 13 C -0.589 4.589 14 H 0.081 0.919 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.793 3.207 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.125 4.125 22 C 0.294 3.706 23 F -0.181 7.181 24 F -0.164 7.164 25 N -0.088 5.088 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.245 0.755 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.546 -8.048 -16.587 26.151 hybrid contribution 1.706 0.719 0.960 2.086 sum -16.840 -7.329 -15.626 24.114 Atomic orbital electron populations 1.21745 0.91584 1.03122 1.03291 1.21389 0.97939 0.95982 0.97120 1.21865 0.99575 0.96158 1.03154 1.22663 0.70522 1.04716 1.02054 1.48915 1.08491 1.41328 1.12407 1.23790 0.87538 0.93074 0.95477 1.19155 0.91920 1.19554 0.98712 1.20381 0.88756 0.74369 0.79346 1.90874 1.32650 1.51220 1.67028 1.86507 1.37665 1.71204 1.32200 1.23135 0.81197 0.99734 0.93821 1.18953 0.97004 0.94916 0.89455 1.21357 0.93011 1.40086 1.04402 0.91900 1.25897 1.00711 0.94790 0.97640 1.70068 1.28647 1.40927 1.16812 0.85433 0.78852 0.78828 0.77551 1.19255 1.20430 1.19119 1.22990 0.94266 1.00362 0.94894 1.19807 0.78595 0.96821 0.75336 1.93002 1.91958 1.97585 1.35520 1.93153 1.51717 1.77499 1.94058 1.77073 1.01956 1.19409 1.10315 0.90861 0.91875 0.91281 0.91420 0.90868 0.95473 0.91962 0.86888 0.84461 0.75518 0.92204 0.92636 0.97387 0.97156 0.92350 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.19 71.98 0.66 -0.18 16 2 C -0.11 -1.12 3.00 -10.79 -0.03 -1.16 16 3 C -0.15 -2.02 9.08 71.98 0.65 -1.36 16 4 C 0.12 1.12 5.88 86.38 0.51 1.63 16 5 N -0.33 -6.09 3.10 -346.25 -1.07 -7.16 16 6 C 0.15 3.21 11.29 84.30 0.95 4.16 16 7 C -0.28 -8.15 6.09 -20.16 -0.12 -8.27 16 8 C 0.53 19.46 7.91 70.20 0.56 20.02 16 9 O -0.53 -21.91 13.06 19.76 0.26 -21.65 16 10 O -0.36 -14.35 10.05 -56.66 -0.57 -14.92 16 11 C 0.09 4.27 5.41 71.98 0.39 4.66 16 12 C 0.03 1.79 5.35 29.85 0.16 1.95 16 13 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 14 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 15 C 0.01 0.49 5.46 84.65 0.46 0.95 16 16 N -0.93 -54.61 13.29 21.44 0.28 -54.33 16 17 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 C 0.04 1.19 6.89 43.53 0.30 1.49 16 22 C 0.35 9.14 5.65 71.23 0.40 9.54 16 23 F -0.20 -5.31 17.27 44.97 0.78 -4.53 16 24 F -0.18 -6.18 13.60 44.97 0.61 -5.57 16 25 N -0.27 -6.42 12.17 -46.65 -0.57 -6.99 16 26 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.07 1.02 8.04 -2.39 -0.02 1.00 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.03 0.51 7.75 -2.39 -0.02 0.49 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.14 0.52 8.06 -2.38 -0.02 0.50 16 35 H 0.23 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.16 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -73.03 361.22 7.90 -65.13 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.03 Total: 2.01 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.12 Total: 2.55 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.36 Total: -68.48 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.31 Total: -36.57 kcal Atomic # 9 Polarization: -11.49 SS G_CDS: 1.39 Total: -10.11 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -73.03 7.90 -65.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.118 kcal (2) G-P(sol) polarization free energy of solvation -73.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds