Wall clock time and date at job start Tue Mar 31 2020 11:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 F 1.39898 * 113.28521 * 25.75500 * 3 2 1 5 5 C 1.53494 * 114.20887 * 252.67984 * 3 2 1 6 6 N 1.47060 * 87.98794 * 220.34775 * 5 3 2 7 7 C 1.34781 * 136.05691 * 207.08046 * 6 5 3 8 8 O 1.21583 * 120.00052 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99891 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00219 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.46847 * 35.00024 * 10 9 7 12 12 C 1.52997 * 109.47349 * 154.99866 * 10 9 7 13 13 C 1.50701 * 109.47212 * 295.00023 * 12 10 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.50698 * 109.46820 * 275.00554 * 10 9 7 22 22 C 1.38239 * 120.00038 * 319.71712 * 21 10 9 23 23 C 1.38233 * 120.00108 * 179.81592 * 22 21 10 24 24 C 1.38232 * 119.99547 * 0.39864 * 23 22 21 25 25 C 1.38233 * 120.00435 * 359.85867 * 24 23 22 26 26 C 1.38233 * 120.00048 * 359.95315 * 25 24 23 27 27 C 1.47067 * 87.88518 * 27.34436 * 6 5 3 28 28 H 4.43902 * 5.05864 * 179.97438 * 4 1 2 29 29 H 1.09001 * 113.46395 * 105.56427 * 5 3 2 30 30 H 1.09000 * 113.51967 * 335.14421 * 5 3 2 31 31 H 0.97006 * 120.00290 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.47153 * 175.00025 * 12 10 9 33 33 H 1.09001 * 109.46832 * 55.00216 * 12 10 9 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 35 35 H 1.07999 * 119.99523 * 0.02562 * 22 21 10 36 36 H 1.07997 * 120.00088 * 180.23148 * 23 22 21 37 37 H 1.08005 * 119.99599 * 179.83322 * 24 23 22 38 38 H 1.08007 * 119.99657 * 179.97438 * 25 24 23 39 39 H 1.08000 * 119.99807 * 180.02562 * 26 25 24 40 40 H 1.08998 * 113.46763 * 87.43819 * 27 6 5 41 41 H 1.08996 * 113.46429 * 217.87507 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 9 3.1995 -1.1565 -0.5584 5 6 3.2752 0.4177 1.3365 6 7 4.2753 1.1758 0.5698 7 6 5.5483 1.5742 0.7628 8 8 6.1227 1.2943 1.7972 9 7 6.1846 2.2828 -0.1909 10 6 7.5685 2.7155 0.0186 11 1 8.1054 1.9542 0.5847 12 6 8.2499 2.9189 -1.3361 13 6 8.3497 1.5964 -2.0518 14 1 7.9651 0.7006 -1.5872 15 6 8.9310 1.5305 -3.3004 16 7 9.3988 2.6215 -3.8663 17 14 9.0539 -0.1086 -4.1878 18 1 7.8388 -0.3155 -5.0160 19 1 10.2546 -0.1095 -5.0618 20 1 9.1662 -1.2039 -3.1914 21 6 7.5786 4.0124 0.7859 22 6 6.6480 4.9932 0.4979 23 6 6.6548 6.1814 1.2044 24 6 7.5975 6.3920 2.1932 25 6 8.5315 5.4134 2.4776 26 6 8.5222 4.2237 1.7738 27 6 3.2729 1.3136 -0.4975 28 1 -1.0498 -0.0004 0.0000 29 1 3.6983 -0.4165 1.8961 30 1 2.6262 1.0473 1.9452 31 1 5.7262 2.5065 -1.0160 32 1 9.2497 3.3252 -1.1825 33 1 7.6635 3.6140 -1.9369 34 1 9.8081 2.5749 -4.7446 35 1 5.9134 4.8297 -0.2767 36 1 5.9254 6.9461 0.9819 37 1 7.6046 7.3214 2.7433 38 1 9.2683 5.5783 3.2499 39 1 9.2517 3.4590 1.9963 40 1 2.6226 2.1795 -0.3731 41 1 3.6940 1.2426 -1.5003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883544457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:02 Heat of formation + Delta-G solvation = 49.305490 kcal Electronic energy + Delta-G solvation = -25818.156366 eV Core-core repulsion = 22001.799955 eV Total energy + Delta-G solvation = -3816.356411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.00420 -40.21088 -39.01849 -37.67822 -35.12174 -33.45751 -32.71113 -31.24387 -30.45995 -29.18128 -28.35547 -26.43346 -24.89594 -23.28795 -22.27072 -21.92756 -20.10199 -19.47216 -19.12746 -17.76932 -16.82526 -16.40945 -16.25951 -16.09545 -15.59500 -15.29258 -14.94721 -14.62575 -14.50684 -14.39675 -13.49704 -13.46900 -13.42815 -12.99171 -12.66652 -12.50391 -12.31776 -12.22972 -12.09469 -11.76935 -11.50387 -11.13829 -11.12735 -10.91026 -10.72180 -10.59307 -10.45669 -10.27814 -9.78546 -9.75999 -9.28632 -8.86785 -8.52473 -8.44862 -8.32356 -8.17075 -6.07898 -4.11039 1.78483 1.81887 2.18189 2.28424 2.56215 3.28821 3.36084 3.41464 3.42182 3.65368 3.90491 3.97224 4.21356 4.40956 4.45880 4.91342 5.07419 5.21518 5.26679 5.28425 5.28636 5.31577 5.34207 5.38949 5.53908 5.60802 5.78051 5.92085 5.95534 6.16558 6.36915 6.44272 6.59258 6.85616 6.86780 6.92916 7.06937 7.12199 7.37965 7.42033 7.52833 7.65850 7.89349 8.26678 8.38702 8.95066 9.00143 9.54187 11.02590 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007726 B = 0.005489 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3623.296766 B = 5099.754560 C = 7953.600956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.212 4.212 3 C 0.193 3.807 4 F -0.163 7.163 5 C 0.121 3.879 6 N -0.666 5.666 7 C 0.741 3.259 8 O -0.586 6.586 9 N -0.709 5.709 10 C 0.202 3.798 11 H 0.088 0.912 12 C 0.024 3.976 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.071 4.071 22 C -0.107 4.107 23 C -0.126 4.126 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.107 4.107 27 C 0.094 3.906 28 H 0.228 0.772 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.397 0.603 32 H 0.037 0.963 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 2.264 8.506 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.213 4.213 3 C 0.173 3.827 4 F -0.143 7.143 5 C -0.003 4.003 6 N -0.407 5.407 7 C 0.444 3.556 8 O -0.464 6.464 9 N -0.361 5.361 10 C 0.097 3.903 11 H 0.106 0.894 12 C -0.013 4.013 13 C -0.558 4.558 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.073 4.073 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.153 4.153 25 C -0.141 4.141 26 C -0.126 4.126 27 C -0.030 4.030 28 H 0.244 0.756 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.231 0.769 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.122 0.878 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.694 2.175 9.123 17.432 hybrid contribution -0.295 -0.815 -1.140 1.433 sum -14.989 1.360 7.983 17.036 Atomic orbital electron populations 1.25044 0.95690 0.96942 0.97990 1.22288 0.93145 1.03195 1.02642 1.18284 0.82972 0.84360 0.97086 1.92979 1.85737 1.49496 1.86049 1.23271 0.87773 0.96010 0.93256 1.48397 1.10096 1.60553 1.21621 1.15177 0.78253 0.78264 0.83866 1.90899 1.65091 1.62396 1.27997 1.45082 1.15058 1.56873 1.19087 1.20181 0.80223 0.90927 0.98950 0.89432 1.19403 0.96060 0.97860 0.88002 1.21143 1.39003 0.93840 1.01768 0.92353 1.24971 0.95279 0.96350 0.97458 1.69959 1.39683 1.27357 1.16141 0.86605 0.77545 0.84299 0.79675 1.20686 1.21219 1.19804 1.20589 0.94664 0.96780 0.95249 1.20881 0.98934 0.93277 0.99393 1.21026 0.99107 0.97304 0.96947 1.20988 0.96470 0.98995 0.98871 1.21041 0.99006 0.94077 0.99972 1.21024 0.98720 0.97357 0.95462 1.23560 0.89157 0.95229 0.95098 0.75585 0.88679 0.88117 0.76897 0.94531 0.95755 0.92892 0.86728 0.86809 0.86869 0.86597 0.86120 0.87846 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 19.25 29.55 0.57 -0.44 16 2 C -0.21 -2.05 12.90 -37.12 -0.48 -2.53 16 3 C 0.19 2.23 2.28 -92.76 -0.21 2.01 16 4 F -0.16 -2.37 17.30 2.25 0.04 -2.33 16 5 C 0.12 1.44 8.06 -8.52 -0.07 1.37 16 6 N -0.67 -9.96 3.69 -190.88 -0.70 -10.66 16 7 C 0.74 14.19 8.75 -86.92 -0.76 13.43 16 8 O -0.59 -13.31 16.78 5.29 0.09 -13.22 16 9 N -0.71 -13.39 4.05 -59.81 -0.24 -13.63 16 10 C 0.20 4.20 2.11 -69.08 -0.15 4.06 16 11 H 0.09 2.01 7.44 -51.92 -0.39 1.62 16 12 C 0.02 0.58 4.49 -27.88 -0.13 0.46 16 13 C -0.52 -13.90 8.84 -34.44 -0.30 -14.21 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.07 -1.35 4.91 -104.62 -0.51 -1.86 16 22 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 23 C -0.13 -1.88 10.05 -39.59 -0.40 -2.28 16 24 C -0.14 -1.94 10.05 -39.59 -0.40 -2.34 16 25 C -0.12 -1.88 10.05 -39.58 -0.40 -2.27 16 26 C -0.11 -1.90 9.67 -39.58 -0.38 -2.28 16 27 C 0.09 1.05 7.76 -8.37 -0.07 0.99 16 28 H 0.23 0.70 7.80 -54.10 -0.42 0.28 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 31 H 0.40 6.90 8.32 -40.82 -0.34 6.56 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.11 1.83 7.73 -52.49 -0.41 1.42 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.12 2.05 8.04 -52.49 -0.42 1.63 16 40 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -33.63 368.20 -9.02 -42.64 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.32 Total: 6.72 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -4.15 Total: -6.49 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.21 Total: -49.22 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.63 -9.02 -42.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883544457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.949 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds