Wall clock time and date at job start Tue Mar 31 2020 11:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 F 1.39898 * 113.28521 * 25.75500 * 3 2 1 5 5 C 1.53494 * 114.20887 * 252.67984 * 3 2 1 6 6 N 1.47060 * 87.98794 * 220.34775 * 5 3 2 7 7 C 1.34781 * 136.05691 * 207.08046 * 6 5 3 8 8 O 1.21583 * 120.00052 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99891 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00219 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.46847 * 35.00024 * 10 9 7 12 12 C 1.52997 * 109.47349 * 154.99866 * 10 9 7 13 13 C 1.50701 * 109.47212 * 295.00023 * 12 10 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.50698 * 109.46820 * 275.00554 * 10 9 7 22 22 C 1.38239 * 120.00038 * 319.71712 * 21 10 9 23 23 C 1.38233 * 120.00108 * 179.81592 * 22 21 10 24 24 C 1.38232 * 119.99547 * 0.39864 * 23 22 21 25 25 C 1.38233 * 120.00435 * 359.85867 * 24 23 22 26 26 C 1.38233 * 120.00048 * 359.95315 * 25 24 23 27 27 C 1.47067 * 87.88518 * 27.34436 * 6 5 3 28 28 H 4.43902 * 5.05864 * 179.97438 * 4 1 2 29 29 H 1.09001 * 113.46395 * 105.56427 * 5 3 2 30 30 H 1.09000 * 113.51967 * 335.14421 * 5 3 2 31 31 H 0.97006 * 120.00290 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.47153 * 175.00025 * 12 10 9 33 33 H 1.09001 * 109.46832 * 55.00216 * 12 10 9 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 35 35 H 1.07999 * 119.99523 * 0.02562 * 22 21 10 36 36 H 1.07997 * 120.00088 * 180.23148 * 23 22 21 37 37 H 1.08005 * 119.99599 * 179.83322 * 24 23 22 38 38 H 1.08007 * 119.99657 * 179.97438 * 25 24 23 39 39 H 1.08000 * 119.99807 * 180.02562 * 26 25 24 40 40 H 1.08998 * 113.46763 * 87.43819 * 27 6 5 41 41 H 1.08996 * 113.46429 * 217.87507 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 9 3.1995 -1.1565 -0.5584 5 6 3.2752 0.4177 1.3365 6 7 4.2753 1.1758 0.5698 7 6 5.5483 1.5742 0.7628 8 8 6.1227 1.2943 1.7972 9 7 6.1846 2.2828 -0.1909 10 6 7.5685 2.7155 0.0186 11 1 8.1054 1.9542 0.5847 12 6 8.2499 2.9189 -1.3361 13 6 8.3497 1.5964 -2.0518 14 1 7.9651 0.7006 -1.5872 15 6 8.9310 1.5305 -3.3004 16 7 9.3988 2.6215 -3.8663 17 14 9.0539 -0.1086 -4.1878 18 1 7.8388 -0.3155 -5.0160 19 1 10.2546 -0.1095 -5.0618 20 1 9.1662 -1.2039 -3.1914 21 6 7.5786 4.0124 0.7859 22 6 6.6480 4.9932 0.4979 23 6 6.6548 6.1814 1.2044 24 6 7.5975 6.3920 2.1932 25 6 8.5315 5.4134 2.4776 26 6 8.5222 4.2237 1.7738 27 6 3.2729 1.3136 -0.4975 28 1 -1.0498 -0.0004 0.0000 29 1 3.6983 -0.4165 1.8961 30 1 2.6262 1.0473 1.9452 31 1 5.7262 2.5065 -1.0160 32 1 9.2497 3.3252 -1.1825 33 1 7.6635 3.6140 -1.9369 34 1 9.8081 2.5749 -4.7446 35 1 5.9134 4.8297 -0.2767 36 1 5.9254 6.9461 0.9819 37 1 7.6046 7.3214 2.7433 38 1 9.2683 5.5783 3.2499 39 1 9.2517 3.4590 1.9963 40 1 2.6226 2.1795 -0.3731 41 1 3.6940 1.2426 -1.5003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883544457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:01 Heat of formation + Delta-G solvation = 29.674447 kcal Electronic energy + Delta-G solvation = -25819.007632 eV Core-core repulsion = 22001.799955 eV Total energy + Delta-G solvation = -3817.207677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.03304 -41.52132 -40.26888 -38.98404 -36.77283 -34.75896 -34.18453 -32.66489 -31.70396 -30.64912 -29.78841 -27.41752 -26.62876 -24.40059 -23.79689 -23.31768 -21.54573 -20.89345 -19.97861 -18.99510 -18.59831 -17.80664 -17.47589 -17.12058 -16.80048 -16.48666 -16.47026 -16.23943 -15.83761 -15.65610 -14.97638 -14.68938 -14.64926 -14.36625 -14.18554 -14.02939 -13.67459 -13.44846 -13.25380 -13.22735 -12.95026 -12.65830 -12.56185 -12.48834 -12.15893 -11.88433 -11.81754 -11.61040 -11.37298 -11.31692 -11.06249 -10.60452 -10.28526 -9.76782 -9.70293 -9.51718 -8.22289 -6.31967 0.50539 0.56593 1.32518 1.36614 1.38498 1.49186 1.52549 1.65237 2.07950 2.38104 2.71714 2.82281 3.00903 3.09283 3.12768 3.37077 3.96217 3.98597 4.03819 4.15182 4.21374 4.32340 4.32672 4.34652 4.43828 4.56980 4.65164 4.72011 4.76853 4.78381 5.00126 5.12390 5.20182 5.25092 5.40593 5.60127 5.61372 5.64481 5.76059 5.89249 6.11054 6.15464 6.20524 6.48837 6.79881 6.94631 7.36749 7.52468 8.88339 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007726 B = 0.005489 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3623.296766 B = 5099.754560 C = 7953.600956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.266 4.266 3 C 0.196 3.804 4 F -0.187 7.187 5 C 0.119 3.881 6 N -0.674 5.674 7 C 0.737 3.263 8 O -0.631 6.631 9 N -0.706 5.706 10 C 0.218 3.782 11 H 0.055 0.945 12 C 0.040 3.960 13 C -0.530 4.530 14 H 0.048 0.952 15 C 0.015 3.985 16 N -0.923 5.923 17 Si 0.953 3.047 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.276 1.276 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.133 4.133 27 C 0.097 3.903 28 H 0.269 0.731 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.403 0.597 32 H 0.008 0.992 33 H 0.014 0.986 34 H 0.265 0.735 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.437 3.461 8.835 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.267 4.267 3 C 0.177 3.823 4 F -0.167 7.167 5 C -0.004 4.004 6 N -0.414 5.414 7 C 0.441 3.559 8 O -0.512 6.512 9 N -0.358 5.358 10 C 0.113 3.887 11 H 0.073 0.927 12 C 0.002 3.998 13 C -0.568 4.568 14 H 0.066 0.934 15 C -0.184 4.184 16 N -0.563 5.563 17 Si 0.778 3.222 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.201 1.201 21 C -0.100 4.100 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.152 4.152 27 C -0.026 4.026 28 H 0.284 0.716 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.238 0.762 32 H 0.026 0.974 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.130 0.870 40 H 0.157 0.843 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.619 3.363 9.429 20.264 hybrid contribution 0.493 -1.166 -1.199 1.744 sum -17.126 2.196 8.230 19.127 Atomic orbital electron populations 1.25990 0.96266 0.93669 0.94674 1.22016 0.92820 1.06232 1.05667 1.18163 0.84616 0.83312 0.96217 1.92925 1.86422 1.50982 1.86404 1.23566 0.87097 0.95864 0.93870 1.48398 1.09468 1.59825 1.23705 1.15243 0.79451 0.78089 0.83166 1.90850 1.66730 1.64047 1.29615 1.44867 1.14305 1.57128 1.19478 1.19644 0.80778 0.91629 0.96699 0.92697 1.19128 0.94732 0.96290 0.89631 1.21356 1.38855 0.94420 1.02154 0.93421 1.25704 0.94906 0.99564 0.98189 1.70055 1.40396 1.29215 1.16611 0.85639 0.78015 0.80089 0.78449 1.19497 1.20533 1.20146 1.20449 0.96644 0.96353 0.96520 1.21034 0.98686 0.93906 1.00140 1.21432 0.99659 0.96888 0.96162 1.21475 0.95057 0.99882 0.98208 1.21387 0.99797 0.93063 0.99876 1.21176 0.98859 0.98758 0.96402 1.23856 0.88208 0.96706 0.93829 0.71556 0.89920 0.84951 0.76185 0.97360 0.96762 0.92623 0.86322 0.83471 0.82996 0.83813 0.87032 0.84270 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 19.25 74.32 1.43 0.50 16 2 C -0.27 -4.55 12.90 31.12 0.40 -4.15 16 3 C 0.20 4.41 2.28 -12.18 -0.03 4.39 16 4 F -0.19 -5.56 17.30 44.97 0.78 -4.78 16 5 C 0.12 2.80 8.06 83.18 0.67 3.47 16 6 N -0.67 -20.44 3.69 -876.09 -3.23 -23.67 16 7 C 0.74 29.51 8.75 179.05 1.57 31.07 16 8 O -0.63 -30.27 16.78 -3.98 -0.07 -30.34 16 9 N -0.71 -28.03 4.05 -461.40 -1.87 -29.90 16 10 C 0.22 9.73 2.11 44.24 0.09 9.82 16 11 H 0.05 2.76 7.44 -2.38 -0.02 2.75 16 12 C 0.04 2.04 4.49 29.85 0.13 2.17 16 13 C -0.53 -29.61 8.84 25.60 0.23 -29.39 16 14 H 0.05 2.72 7.74 -2.91 -0.02 2.69 16 15 C 0.02 0.86 5.46 84.66 0.46 1.33 16 16 N -0.92 -54.25 13.29 21.45 0.28 -53.96 16 17 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 C -0.10 -3.88 4.91 -19.87 -0.10 -3.98 16 22 C -0.12 -4.05 9.32 22.27 0.21 -3.84 16 23 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 24 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 25 C -0.12 -3.61 10.05 22.27 0.22 -3.39 16 26 C -0.13 -4.90 9.67 22.27 0.22 -4.69 16 27 C 0.10 2.09 7.76 83.26 0.65 2.74 16 28 H 0.27 0.14 7.80 -4.43 -0.03 0.11 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.13 2.25 8.09 -2.39 -0.02 2.23 16 31 H 0.40 14.63 8.32 -92.70 -0.77 13.86 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.12 3.79 7.73 -2.91 -0.02 3.77 16 36 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.11 4.12 8.04 -2.91 -0.02 4.10 16 40 H 0.14 2.02 8.09 -2.39 -0.02 2.00 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -76.96 368.20 4.80 -72.16 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.27 Total: 24.08 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.60 Total: -0.21 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.81 Total: -107.53 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.07 Total: -30.34 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.78 Total: -4.78 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.96 4.80 -72.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883544457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.837 kcal (2) G-P(sol) polarization free energy of solvation -76.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds