Wall clock time and date at job start Tue Mar 31 2020 12:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87538 * 2 1 4 4 C 1.54332 * 109.88205 * 238.98350 * 2 1 3 5 5 H 1.09001 * 110.71550 * 336.93275 * 4 2 1 6 6 N 1.46505 * 110.71747 * 100.02536 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31617 * 119.99873 * 180.27450 * 9 7 6 11 11 Si 1.86800 * 120.00209 * 0.27770 * 9 7 6 12 12 H 1.48498 * 109.47118 * 89.99559 * 11 9 7 13 13 H 1.48499 * 109.47134 * 210.00079 * 11 9 7 14 14 H 1.48507 * 109.46904 * 329.99901 * 11 9 7 15 15 C 1.55150 * 102.94391 * 218.38859 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 109.88647 * 121.17882 * 2 1 3 18 18 C 1.34777 * 125.64806 * 298.39420 * 17 2 1 19 19 O 1.21521 * 119.99817 * 359.97438 * 18 17 2 20 20 C 1.48116 * 120.00127 * 179.97438 * 18 17 2 21 21 C 1.39825 * 119.37714 * 179.97438 * 20 18 17 22 22 C 1.36967 * 119.61238 * 179.97438 * 21 20 18 23 23 C 1.39814 * 118.24946 * 0.02562 * 22 21 20 24 24 N 1.34652 * 135.00174 * 180.02562 * 23 22 21 25 25 N 1.28670 * 109.15816 * 179.97438 * 24 23 22 26 26 N 1.28768 * 111.84777 * 359.97438 * 25 24 23 27 27 H 0.96997 * 125.85996 * 179.97438 * 26 25 24 28 28 C 1.37249 * 108.28367 * 359.97438 * 26 25 24 29 29 N 1.31957 * 134.71137 * 180.30908 * 28 26 25 30 30 H 1.09002 * 109.46953 * 181.01863 * 1 2 3 31 31 H 1.09008 * 109.46982 * 301.01098 * 1 2 3 32 32 H 1.08997 * 109.47268 * 61.01462 * 1 2 3 33 33 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 34 34 H 0.97000 * 120.00553 * 180.02562 * 10 9 7 35 35 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 36 36 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 37 37 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 38 38 H 1.08995 * 110.37119 * 81.82663 * 16 15 4 39 39 H 1.08006 * 120.19022 * 359.95808 * 21 20 18 40 40 H 1.07996 * 120.87372 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2438 5 1 1.3039 -1.4414 -1.6221 6 7 2.4554 0.1993 -2.2873 7 6 2.4581 -0.1895 -3.6003 8 1 2.1645 -1.1941 -3.8667 9 6 2.8322 0.7097 -4.5895 10 7 2.8296 0.3378 -5.8520 11 14 3.3393 2.4476 -4.1289 12 1 4.8037 2.4878 -3.8857 13 1 2.9959 3.3737 -5.2377 14 1 2.6214 2.8626 -2.8969 15 6 3.2876 -1.5133 -0.6946 16 6 2.8145 -1.8805 0.7340 17 7 2.0301 -0.7157 1.1828 18 6 1.8075 -0.3656 2.4651 19 8 1.1424 0.6192 2.7194 20 6 2.3736 -1.1810 3.5645 21 6 2.1350 -0.8054 4.8900 22 6 2.6557 -1.5563 5.9104 23 6 3.4156 -2.6829 5.5818 24 7 4.0656 -3.6307 6.2835 25 7 4.6165 -4.4579 5.4662 26 7 4.3882 -4.1425 4.2388 27 1 4.7063 -4.6248 3.4596 28 6 3.6176 -3.0069 4.2221 29 7 3.0911 -2.2561 3.2732 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3633 0.5295 0.8808 32 1 -0.3633 0.4980 -0.8989 33 1 2.7187 1.1017 -2.0481 34 1 3.0913 0.9659 -6.5433 35 1 3.4851 -2.4092 -1.2832 36 1 4.1654 -0.8679 -0.6618 37 1 3.6717 -2.0358 1.3893 38 1 2.1886 -2.7725 0.7089 39 1 1.5437 0.0717 5.1080 40 1 2.4845 -1.2847 6.9415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986333210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:47 Heat of formation + Delta-G solvation = 128.271739 kcal Electronic energy + Delta-G solvation = -26025.235342 eV Core-core repulsion = 22264.515877 eV Total energy + Delta-G solvation = -3760.719465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.83381 -40.66290 -39.04379 -37.53955 -34.84081 -34.30159 -32.47648 -31.86159 -31.30800 -30.90431 -29.58727 -26.16048 -25.39214 -24.44569 -23.25989 -22.82021 -22.55947 -20.60577 -19.83260 -19.20426 -18.80451 -17.67014 -17.43434 -17.07033 -16.33961 -15.74371 -15.42489 -14.82427 -14.42315 -14.15828 -14.02548 -13.75400 -13.44850 -13.27666 -12.93880 -12.83305 -12.76209 -12.34398 -12.31385 -12.14008 -12.00931 -11.85163 -11.36927 -11.27354 -10.95153 -10.68593 -10.60492 -10.29095 -10.07909 -9.74848 -9.71263 -9.67470 -9.52587 -8.99409 -8.58995 -7.38831 -5.86142 -3.23629 -0.34587 0.49937 1.64339 1.65399 2.46645 2.75644 3.24394 3.32465 3.32821 3.35945 3.41186 3.73986 3.89156 4.22617 4.30743 4.51346 4.85620 4.88406 4.93644 5.01430 5.19560 5.27283 5.39576 5.43407 5.51075 5.55978 5.67792 5.76796 5.79150 5.93225 5.98104 6.10925 6.20798 6.28661 6.45815 6.48654 6.50934 6.74542 6.91009 7.47380 7.63713 7.87235 7.98386 8.32169 9.08717 9.81285 9.99395 11.31554 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.022656 B = 0.003164 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.552805 B = 8847.304451 C = 9504.066561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 H 0.078 0.922 4 C 0.182 3.818 5 H 0.077 0.923 6 N -0.738 5.738 7 C -0.249 4.249 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.159 4.159 16 C 0.101 3.899 17 N -0.583 5.583 18 C 0.579 3.421 19 O -0.528 6.528 20 C 0.159 3.841 21 C -0.121 4.121 22 C -0.002 4.002 23 C -0.026 4.026 24 N -0.240 5.240 25 N 0.010 4.990 26 N -0.401 5.401 27 H 0.460 0.540 28 C 0.213 3.787 29 N -0.436 5.436 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.363 0.637 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.167 0.833 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -7.018 22.780 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.017 3.983 3 H 0.096 0.904 4 C 0.070 3.930 5 H 0.095 0.905 6 N -0.380 5.380 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.201 4.201 16 C -0.022 4.022 17 N -0.314 5.314 18 C 0.364 3.636 19 O -0.404 6.404 20 C 0.004 3.996 21 C -0.145 4.145 22 C -0.033 4.033 23 C -0.153 4.153 24 N -0.117 5.117 25 N 0.026 4.974 26 N -0.132 5.132 27 H 0.309 0.691 28 C -0.031 4.031 29 N -0.153 5.153 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.196 0.804 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.185 0.815 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.801 -7.834 22.854 24.172 hybrid contribution 0.174 1.668 -0.292 1.703 sum 0.975 -6.166 22.562 23.410 Atomic orbital electron populations 1.22066 0.94312 1.02067 1.02969 1.22095 0.94960 0.96808 0.84407 0.90357 1.21232 0.94066 0.91287 0.86390 0.90491 1.42704 1.80866 1.11049 1.03372 1.19026 1.39095 0.98952 0.80747 0.88988 1.24662 1.01243 0.97756 0.95042 1.69690 1.53840 1.35275 0.98900 0.86592 0.78673 0.86007 0.77515 1.21017 1.21604 1.20176 1.23604 1.00790 1.01950 0.93709 1.22722 0.95815 0.87365 0.96271 1.48414 1.50234 1.28418 1.04352 1.17282 0.81111 0.84114 0.81090 1.90810 1.40108 1.26569 1.82894 1.21315 0.93580 0.90646 0.94022 1.21751 1.00246 1.01568 0.90915 1.20522 0.91809 0.89579 1.01368 1.20695 1.03775 0.99413 0.91440 1.75421 1.10534 1.01926 1.23771 1.78123 1.14648 1.18481 0.86106 1.44700 1.39105 1.20266 1.09175 0.69124 1.19951 0.99028 0.92160 0.91929 1.66788 1.09272 1.04766 1.34485 0.92713 0.91794 0.90837 0.80366 0.92904 0.90103 0.90882 0.88742 0.91597 0.81506 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.09 37.16 0.34 -2.00 16 2 C 0.12 1.93 3.21 -66.95 -0.22 1.71 16 3 H 0.08 1.36 7.71 -51.93 -0.40 0.96 16 4 C 0.18 3.20 3.14 -66.09 -0.21 2.99 16 5 H 0.08 1.38 7.80 -51.93 -0.40 0.98 16 6 N -0.74 -16.32 5.03 -51.65 -0.26 -16.58 16 7 C -0.25 -6.61 10.44 -15.06 -0.16 -6.76 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 10 N -0.93 -28.25 13.97 55.49 0.78 -27.48 16 11 Si 0.88 21.42 27.74 -169.99 -4.72 16.70 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.32 6.51 56.52 0.37 -5.95 16 15 C -0.16 -2.40 6.77 -24.59 -0.17 -2.57 16 16 C 0.10 1.27 5.92 -2.53 -0.01 1.25 16 17 N -0.58 -8.25 3.07 -164.02 -0.50 -8.76 16 18 C 0.58 8.05 7.63 -12.21 -0.09 7.96 16 19 O -0.53 -8.42 15.33 5.35 0.08 -8.34 16 20 C 0.16 1.79 6.72 -82.93 -0.56 1.24 16 21 C -0.12 -1.07 9.55 -39.45 -0.38 -1.44 16 22 C 0.00 -0.02 10.16 -39.45 -0.40 -0.42 16 23 C -0.03 -0.26 7.38 -84.90 -0.63 -0.88 16 24 N -0.24 -2.59 12.43 32.12 0.40 -2.19 16 25 N 0.01 0.09 13.28 60.35 0.80 0.90 16 26 N -0.40 -3.14 7.06 31.13 0.22 -2.92 16 27 H 0.46 1.99 8.96 -190.26 -1.71 0.28 16 28 C 0.21 2.12 8.56 -156.28 -1.34 0.78 16 29 N -0.44 -4.69 6.58 -8.90 -0.06 -4.75 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.97 6.90 -51.92 -0.36 0.61 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.36 8.04 5.42 -40.82 -0.22 7.82 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.10 5.88 -51.93 -0.31 0.79 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.17 1.24 7.61 -52.48 -0.40 0.85 16 40 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -32.54 334.72 -8.05 -40.59 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.92 Total: 5.76 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -3.91 Total: 2.02 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 1.37 Total: -61.77 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.72 Total: 16.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.54 -8.05 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986333210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.861 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds