Wall clock time and date at job start Tue Mar 31 2020 12:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.99312 * 2 1 4 4 C 1.54316 * 109.88271 * 238.90310 * 2 1 3 5 5 H 1.09001 * 110.72387 * 144.23472 * 4 2 1 6 6 N 1.46502 * 110.72275 * 21.13439 * 4 2 1 7 7 C 1.36940 * 119.99533 * 157.44040 * 6 4 2 8 8 H 1.07996 * 120.00709 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99429 * 180.02562 * 7 6 4 10 10 N 1.31622 * 120.00203 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99693 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47021 * 270.00085 * 11 9 7 13 13 H 1.48499 * 109.47041 * 30.00045 * 11 9 7 14 14 H 1.48498 * 109.46891 * 150.00228 * 11 9 7 15 15 C 1.55164 * 103.10193 * 262.68630 * 4 2 1 16 16 C 1.54911 * 101.57860 * 324.58637 * 15 4 2 17 17 N 1.47315 * 109.84648 * 121.29516 * 2 1 3 18 18 C 1.34778 * 125.61657 * 300.41821 * 17 2 1 19 19 O 1.21564 * 120.00262 * 356.49549 * 18 17 2 20 20 C 1.47725 * 119.99878 * 176.49820 * 18 17 2 21 21 C 1.40114 * 120.35275 * 206.63995 * 20 18 17 22 22 N 1.31259 * 121.15211 * 180.02562 * 21 20 18 23 23 C 1.32722 * 121.80069 * 359.97022 * 22 21 20 24 24 N 1.37108 * 133.40556 * 180.02562 * 23 22 21 25 25 H 0.97008 * 126.59373 * 359.96751 * 24 23 22 26 26 N 1.40188 * 106.81992 * 179.97438 * 24 23 22 27 27 N 1.28668 * 109.50885 * 0.02562 * 26 24 23 28 28 C 1.35326 * 110.00019 * 359.97438 * 27 26 24 29 29 C 1.39434 * 120.35161 * 26.36447 * 20 18 17 30 30 H 1.08998 * 109.47070 * 181.09835 * 1 2 3 31 31 H 1.09002 * 109.47290 * 301.09991 * 1 2 3 32 32 H 1.09004 * 109.47014 * 61.09769 * 1 2 3 33 33 H 0.96996 * 119.99791 * 337.44698 * 6 4 2 34 34 H 0.97001 * 119.99911 * 180.02562 * 10 9 7 35 35 H 1.08996 * 111.00361 * 82.65875 * 15 4 2 36 36 H 1.08993 * 111.00285 * 206.51983 * 15 4 2 37 37 H 1.09001 * 110.36441 * 155.84616 * 16 15 4 38 38 H 1.08998 * 110.37189 * 278.16961 * 16 15 4 39 39 H 1.08004 * 119.42516 * 359.97438 * 21 20 18 40 40 H 1.07998 * 120.95054 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2426 5 1 2.9640 -0.2813 -1.6201 6 7 1.0293 -0.8027 -2.2874 7 6 1.3926 -0.9891 -3.5945 8 1 2.4351 -1.0972 -3.8552 9 6 0.4209 -1.0390 -4.5846 10 7 -0.8496 -0.9067 -4.2670 11 14 0.9164 -1.2939 -6.3676 12 1 1.1496 0.0246 -7.0099 13 1 2.1625 -2.0997 -6.4247 14 1 -0.1690 -2.0092 -7.0855 15 6 2.3554 -2.1701 -0.6956 16 6 2.8598 -1.8525 0.7342 17 7 2.0302 -0.7198 1.1840 18 6 1.7749 -0.3937 2.4666 19 8 1.1305 0.6046 2.7233 20 6 2.2782 -1.2495 3.5605 21 6 1.6132 -1.2871 4.7932 22 7 2.0469 -2.0414 5.7760 23 6 3.1285 -2.8003 5.6503 24 7 3.7800 -3.6597 6.4970 25 1 3.5314 -3.8707 7.4106 26 7 4.8745 -4.1749 5.7887 27 7 4.8946 -3.6730 4.6041 28 6 3.8551 -2.8213 4.4447 29 6 3.4167 -2.0328 3.3753 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3634 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8997 33 1 0.0930 -0.7059 -2.0533 34 1 -1.5286 -0.9420 -4.9588 35 1 1.4502 -2.7765 -0.6649 36 1 3.1317 -2.6591 -1.2840 37 1 2.7139 -2.7126 1.3877 38 1 3.9114 -1.5668 0.7109 39 1 0.7287 -0.6843 4.9376 40 1 3.9472 -2.0281 2.4347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986354924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:35 Heat of formation + Delta-G solvation = 128.591876 kcal Electronic energy + Delta-G solvation = -25936.849741 eV Core-core repulsion = 22176.144158 eV Total energy + Delta-G solvation = -3760.705583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78031 -40.49058 -38.81092 -37.45886 -34.80144 -34.12093 -32.52492 -31.47715 -30.96475 -30.76376 -28.87009 -25.73856 -25.11376 -24.85647 -23.63379 -22.92566 -22.60543 -20.48746 -19.31201 -18.90678 -18.16249 -17.55742 -17.18240 -16.57459 -16.37405 -15.80533 -15.60144 -14.73971 -14.55698 -14.21097 -13.80483 -13.65254 -13.41190 -13.34222 -13.01533 -12.85599 -12.58131 -12.40466 -12.13933 -12.04521 -11.75794 -11.56897 -11.30314 -11.02978 -10.84363 -10.55576 -10.41097 -10.24984 -10.05507 -9.80470 -9.73421 -9.67149 -9.43063 -9.00189 -8.58781 -7.08411 -5.86531 -3.16735 -0.22368 0.28234 1.58321 1.65297 2.54394 2.83354 3.25154 3.38566 3.42976 3.44663 3.45698 3.76739 3.85840 4.23361 4.28139 4.49254 4.51784 4.84863 4.94831 5.13734 5.18530 5.21514 5.34055 5.41113 5.46172 5.55888 5.68642 5.74488 5.91764 6.02859 6.13661 6.20640 6.24229 6.46020 6.48290 6.59388 6.74350 6.89930 7.06568 7.34004 7.52734 7.62058 8.06936 8.31785 9.43741 9.97597 10.32323 11.35748 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.002917 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.215505 B = 9597.592727 C =10379.155734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 H 0.077 0.923 4 C 0.173 3.827 5 H 0.066 0.934 6 N -0.716 5.716 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.281 1.281 14 H -0.291 1.291 15 C -0.154 4.154 16 C 0.083 3.917 17 N -0.599 5.599 18 C 0.580 3.420 19 O -0.530 6.530 20 C -0.193 4.193 21 C 0.237 3.763 22 N -0.491 5.491 23 C 0.292 3.708 24 N -0.485 5.485 25 H 0.454 0.546 26 N 0.017 4.983 27 N -0.191 5.191 28 C -0.074 4.074 29 C 0.041 3.959 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.391 0.609 34 H 0.257 0.743 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.189 0.811 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 -3.673 19.672 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 H 0.095 0.905 4 C 0.061 3.939 5 H 0.084 0.916 6 N -0.359 5.359 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.207 1.207 14 H -0.218 1.218 15 C -0.195 4.195 16 C -0.040 4.040 17 N -0.332 5.332 18 C 0.368 3.632 19 O -0.408 6.408 20 C -0.202 4.202 21 C 0.063 3.937 22 N -0.205 5.205 23 C 0.047 3.953 24 N -0.210 5.210 25 H 0.302 0.698 26 N 0.033 4.967 27 N -0.072 5.072 28 C -0.200 4.200 29 C 0.011 3.989 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.206 0.794 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.663 -4.150 20.511 22.648 hybrid contribution -0.549 0.141 -1.003 1.152 sum 8.114 -4.010 19.508 21.505 Atomic orbital electron populations 1.22015 0.94265 1.02542 1.02947 1.21995 0.95599 0.95884 0.83946 0.90450 1.21196 0.93384 0.91943 0.87364 0.91560 1.42669 1.04734 1.86268 1.02276 1.19235 0.92779 1.42296 0.83427 0.91001 1.24760 0.95254 1.02419 0.98146 1.69655 0.99082 1.56534 1.32509 0.86180 0.77259 0.77689 0.84955 1.21631 1.20685 1.21770 1.23606 1.01926 1.01543 0.92469 1.22821 0.94524 0.88683 0.97936 1.48588 1.49523 1.30260 1.04831 1.17301 0.80391 0.84578 0.80964 1.90808 1.40754 1.26291 1.82955 1.20858 0.99088 1.02544 0.97662 1.23092 0.96294 0.89343 0.84941 1.66825 1.11980 1.08694 1.32986 1.19656 0.92801 0.93143 0.89732 1.47526 1.22487 1.35231 1.15744 0.69829 1.81736 1.01479 1.14768 0.98668 1.74896 1.16648 1.06466 1.09238 1.20393 0.97711 1.05123 0.96747 1.21837 0.92596 0.87120 0.97378 0.92427 0.92100 0.89877 0.77065 0.93326 0.90460 0.90244 0.90775 0.90789 0.79439 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 7.94 37.16 0.30 -2.45 16 2 C 0.13 2.06 3.48 -66.79 -0.23 1.83 16 3 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.17 3.05 3.46 -66.09 -0.23 2.82 16 5 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 6 N -0.72 -16.37 4.98 -51.65 -0.26 -16.63 16 7 C -0.25 -6.36 9.97 -15.06 -0.15 -6.51 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 11 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 15 C -0.15 -2.28 6.77 -24.58 -0.17 -2.44 16 16 C 0.08 0.95 5.02 -2.53 -0.01 0.94 16 17 N -0.60 -8.12 3.09 -163.94 -0.51 -8.63 16 18 C 0.58 7.86 7.41 -12.38 -0.09 7.77 16 19 O -0.53 -8.64 15.69 5.31 0.08 -8.55 16 20 C -0.19 -2.10 5.72 -104.87 -0.60 -2.70 16 21 C 0.24 2.38 10.74 -17.09 -0.18 2.20 16 22 N -0.49 -5.09 10.37 -12.03 -0.12 -5.21 16 23 C 0.29 3.02 8.49 -155.93 -1.32 1.70 16 24 N -0.48 -4.04 7.52 31.15 0.23 -3.80 16 25 H 0.45 2.15 8.96 -182.52 -1.64 0.51 16 26 N 0.02 0.17 13.82 60.35 0.83 1.00 16 27 N -0.19 -2.19 12.40 32.17 0.40 -1.79 16 28 C -0.07 -0.81 7.27 -84.74 -0.62 -1.43 16 29 C 0.04 0.41 8.10 -38.51 -0.31 0.10 16 30 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.06 1.03 6.89 -51.93 -0.36 0.67 16 32 H 0.08 1.59 6.72 -51.93 -0.35 1.24 16 33 H 0.39 9.49 4.99 -40.82 -0.20 9.29 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.74 6.11 -51.93 -0.32 0.42 16 38 H 0.07 0.69 7.32 -51.93 -0.38 0.31 16 39 H 0.19 1.59 7.86 -52.48 -0.41 1.17 16 40 H 0.17 1.45 4.57 -52.49 -0.24 1.21 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -31.18 331.84 -7.90 -39.09 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.55 Total: 7.74 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.72 Total: 1.47 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 1.30 Total: -61.12 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.18 -7.90 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986354924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.680 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds