Wall clock time and date at job start Tue Mar 31 2020 12:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.99945 * 2 1 4 4 C 1.54322 * 109.88184 * 121.08948 * 2 1 3 5 5 H 1.08998 * 110.87078 * 23.18236 * 4 2 1 6 6 N 1.46498 * 110.72405 * 259.97709 * 4 2 1 7 7 C 1.36930 * 120.00182 * 160.02559 * 6 4 2 8 8 H 1.08002 * 120.00385 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00340 * 180.02562 * 7 6 4 10 10 N 1.31617 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00341 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46899 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46961 * 239.99800 * 11 9 7 14 14 H 1.48502 * 109.46984 * 119.99760 * 11 9 7 15 15 C 1.55162 * 102.94179 * 141.61225 * 4 2 1 16 16 C 1.54914 * 101.58072 * 324.50030 * 15 4 2 17 17 N 1.47021 * 109.88501 * 238.90304 * 2 1 3 18 18 C 1.34770 * 125.64871 * 61.60634 * 17 2 1 19 19 O 1.21566 * 120.00371 * 356.46253 * 18 17 2 20 20 C 1.47730 * 120.00189 * 176.46079 * 18 17 2 21 21 C 1.40118 * 120.35273 * 205.94907 * 20 18 17 22 22 N 1.31262 * 121.14420 * 179.71087 * 21 20 18 23 23 C 1.32715 * 121.80061 * 0.55902 * 22 21 20 24 24 N 1.37116 * 133.39841 * 179.73928 * 23 22 21 25 25 H 0.96992 * 126.59873 * 359.95906 * 24 23 22 26 26 N 1.40196 * 106.81784 * 179.97438 * 24 23 22 27 27 N 1.28669 * 109.50733 * 359.97438 * 26 24 23 28 28 C 1.35333 * 109.99918 * 0.02562 * 27 26 24 29 29 C 1.39429 * 120.34592 * 26.21912 * 20 18 17 30 30 H 1.08996 * 109.47396 * 298.90547 * 1 2 3 31 31 H 1.09001 * 109.47334 * 58.90854 * 1 2 3 32 32 H 1.09004 * 109.47234 * 178.90560 * 1 2 3 33 33 H 0.97005 * 119.99822 * 340.02259 * 6 4 2 34 34 H 0.97006 * 119.99993 * 0.02562 * 10 9 7 35 35 H 1.08997 * 111.00316 * 82.57587 * 15 4 2 36 36 H 1.09001 * 111.00537 * 206.42628 * 15 4 2 37 37 H 1.08997 * 110.36149 * 155.84306 * 16 15 4 38 38 H 1.08997 * 110.36588 * 278.16853 * 16 15 4 39 39 H 1.08002 * 119.42207 * 359.97438 * 21 20 18 40 40 H 1.08005 * 120.95530 * 0.03180 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 1.3064 -1.4457 1.6211 6 7 2.4553 0.1962 2.2876 7 6 2.5574 -0.2223 3.5873 8 1 2.3422 -1.2495 3.8424 9 6 2.9364 0.6738 4.5774 10 7 3.1982 1.9257 4.2667 11 14 3.0749 0.1030 6.3507 12 1 2.7295 -1.3389 6.4350 13 1 2.1392 0.8860 7.1973 14 1 4.4655 0.3082 6.8296 15 6 3.2876 -1.5141 0.6925 16 6 2.8145 -1.8794 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8075 -0.3621 -2.4656 19 8 1.0891 0.5850 -2.7200 20 6 2.4365 -1.1272 -3.5617 21 6 2.6827 -0.5186 -4.7995 22 7 3.2459 -1.1821 -5.7822 23 6 3.5969 -2.4557 -5.6552 24 7 4.1815 -3.3608 -6.5032 25 1 4.4581 -3.2002 -7.4189 26 7 4.3025 -4.5631 -5.7925 27 7 3.8314 -4.4095 -4.6050 28 6 3.3801 -3.1436 -4.4463 29 6 2.7864 -2.4642 -3.3770 30 1 -0.3634 0.4967 0.8996 31 1 -0.3634 0.5307 -0.8800 32 1 -0.3634 -1.0275 -0.0196 33 1 2.6483 1.1189 2.0585 34 1 3.1259 2.2222 3.3459 35 1 4.1654 -0.8688 0.6606 36 1 3.4852 -2.4109 1.2798 37 1 3.6717 -2.0337 -1.3920 38 1 2.1887 -2.7715 -0.7127 39 1 2.4081 0.5155 -4.9463 40 1 2.6044 -2.9611 -2.4355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986354927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:41 Heat of formation + Delta-G solvation = 122.071715 kcal Electronic energy + Delta-G solvation = -25882.196227 eV Core-core repulsion = 22121.207909 eV Total energy + Delta-G solvation = -3760.988318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.81649 -40.55553 -38.84637 -37.50041 -34.86614 -34.31607 -32.66476 -31.50301 -31.14948 -30.78884 -28.93942 -25.71966 -25.01982 -24.84709 -23.46895 -22.91838 -22.51950 -20.69263 -19.69844 -19.21074 -18.16857 -17.59298 -17.11025 -16.65284 -16.45274 -16.21500 -15.33903 -14.94336 -14.42252 -14.29965 -13.75402 -13.69942 -13.58136 -13.42586 -13.10678 -12.97679 -12.79956 -12.42675 -12.41550 -12.21139 -11.90912 -11.62396 -11.36201 -11.02774 -10.68955 -10.61745 -10.40341 -10.30956 -10.09554 -9.83934 -9.77008 -9.47847 -9.27582 -9.00588 -8.66849 -7.16470 -6.19362 -3.21877 -0.26135 0.23650 1.54971 1.61781 2.48749 2.75763 3.20301 3.38517 3.47669 3.53639 3.62851 3.72749 3.82036 4.18719 4.22646 4.44851 4.58522 4.76747 4.90177 5.06018 5.11585 5.13838 5.26959 5.31110 5.37092 5.57531 5.58140 5.66862 5.77228 5.86966 5.90966 6.12000 6.20478 6.26575 6.42123 6.45281 6.51038 6.74820 7.02705 7.30543 7.44215 7.71948 7.99426 8.65709 9.09319 9.95927 10.08925 11.28517 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.002918 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.887700 B = 9591.834123 C =10305.796252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.128 3.872 3 H 0.079 0.921 4 C 0.182 3.818 5 H 0.068 0.932 6 N -0.726 5.726 7 C -0.336 4.336 8 H 0.068 0.932 9 C -0.041 4.041 10 N -0.941 5.941 11 Si 1.085 2.915 12 H -0.294 1.294 13 H -0.292 1.292 14 H -0.293 1.293 15 C -0.155 4.155 16 C 0.084 3.916 17 N -0.599 5.599 18 C 0.581 3.419 19 O -0.530 6.530 20 C -0.194 4.194 21 C 0.237 3.763 22 N -0.490 5.490 23 C 0.292 3.708 24 N -0.484 5.484 25 H 0.454 0.546 26 N 0.018 4.982 27 N -0.191 5.191 28 C -0.074 4.074 29 C 0.041 3.959 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.369 0.631 34 H 0.257 0.743 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.189 0.811 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 -9.921 -19.818 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.097 0.903 4 C 0.070 3.930 5 H 0.086 0.914 6 N -0.367 5.367 7 C -0.467 4.467 8 H 0.086 0.914 9 C -0.239 4.239 10 N -0.585 5.585 11 Si 0.916 3.084 12 H -0.220 1.220 13 H -0.219 1.219 14 H -0.220 1.220 15 C -0.196 4.196 16 C -0.039 4.039 17 N -0.332 5.332 18 C 0.368 3.632 19 O -0.408 6.408 20 C -0.202 4.202 21 C 0.063 3.937 22 N -0.204 5.204 23 C 0.047 3.953 24 N -0.210 5.210 25 H 0.302 0.698 26 N 0.034 4.966 27 N -0.072 5.072 28 C -0.200 4.200 29 C 0.011 3.989 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.203 0.797 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.206 0.794 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.387 -10.275 -19.197 21.778 hybrid contribution -0.395 0.296 -1.598 1.672 sum -0.009 -9.979 -20.795 23.065 Atomic orbital electron populations 1.22065 0.94397 1.01929 1.02987 1.21982 0.94783 0.96778 0.84010 0.90289 1.21194 0.93576 0.91480 0.86751 0.91396 1.42355 1.82052 1.08410 1.03931 1.20052 1.44790 0.97067 0.84767 0.91426 1.25796 0.99371 0.94436 1.04290 1.70825 1.51468 1.15872 1.20348 0.83155 0.76530 0.74056 0.74656 1.22023 1.21947 1.21970 1.23597 1.01420 1.02068 0.92564 1.22835 0.94781 0.88422 0.97838 1.48456 1.51391 1.28518 1.04797 1.17318 0.81166 0.83764 0.80949 1.90807 1.37889 1.29073 1.82986 1.20830 1.06933 0.94933 0.97535 1.23092 0.86022 0.99595 0.84941 1.66825 1.15858 1.04593 1.33152 1.19653 0.95388 0.90544 0.89693 1.47532 1.50030 1.07854 1.15543 0.69803 1.81743 1.15112 1.01172 0.98526 1.74903 1.08114 1.14968 1.09246 1.20388 1.10531 0.92378 0.96674 1.21832 0.87426 0.92198 0.97434 0.91052 0.91599 0.92863 0.79721 0.93205 0.90546 0.90136 0.90646 0.90753 0.79417 0.81213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.09 37.16 0.34 -2.03 16 2 C 0.13 2.04 3.23 -66.96 -0.22 1.82 16 3 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 4 C 0.18 3.23 3.11 -66.09 -0.21 3.03 16 5 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 6 N -0.73 -16.72 5.25 -51.65 -0.27 -16.99 16 7 C -0.34 -8.81 9.98 -15.06 -0.15 -8.96 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 10 N -0.94 -28.01 13.70 55.49 0.76 -27.25 16 11 Si 1.09 24.97 29.92 -169.99 -5.09 19.88 16 12 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 C -0.16 -2.33 6.77 -24.58 -0.17 -2.50 16 16 C 0.08 0.97 5.02 -2.53 -0.01 0.95 16 17 N -0.60 -8.12 3.06 -164.16 -0.50 -8.62 16 18 C 0.58 7.82 7.48 -12.38 -0.09 7.73 16 19 O -0.53 -8.56 15.56 5.31 0.08 -8.47 16 20 C -0.19 -2.10 5.72 -104.87 -0.60 -2.70 16 21 C 0.24 2.36 10.74 -17.09 -0.18 2.18 16 22 N -0.49 -5.04 10.37 -12.03 -0.12 -5.16 16 23 C 0.29 3.00 8.49 -155.93 -1.32 1.68 16 24 N -0.48 -4.00 7.53 31.14 0.23 -3.76 16 25 H 0.45 2.11 8.96 -182.53 -1.64 0.48 16 26 N 0.02 0.18 13.82 60.35 0.83 1.01 16 27 N -0.19 -2.17 12.40 32.17 0.40 -1.77 16 28 C -0.07 -0.81 7.27 -84.74 -0.62 -1.42 16 29 C 0.04 0.41 8.10 -38.51 -0.31 0.10 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.03 6.79 -51.93 -0.35 0.68 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.37 8.93 6.34 -40.82 -0.26 8.67 16 34 H 0.26 7.52 6.78 -40.82 -0.28 7.24 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 0.75 6.11 -51.93 -0.32 0.43 16 38 H 0.07 0.70 7.32 -51.93 -0.38 0.32 16 39 H 0.19 1.57 7.85 -52.49 -0.41 1.16 16 40 H 0.17 1.45 4.57 -52.48 -0.24 1.21 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -32.19 334.07 -7.85 -40.04 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.58 Total: 7.41 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.64 Total: -1.34 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: 1.33 Total: -62.55 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.47 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.09 Total: 19.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.19 -7.85 -40.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986354927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.112 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds