Wall clock time and date at job start Tue Mar 31 2020 12:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.99945 * 2 1 4 4 C 1.54322 * 109.88184 * 121.08948 * 2 1 3 5 5 H 1.08998 * 110.87078 * 23.18236 * 4 2 1 6 6 N 1.46498 * 110.72405 * 259.97709 * 4 2 1 7 7 C 1.36930 * 120.00182 * 160.02559 * 6 4 2 8 8 H 1.08002 * 120.00385 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00340 * 180.02562 * 7 6 4 10 10 N 1.31617 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00341 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46899 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46961 * 239.99800 * 11 9 7 14 14 H 1.48502 * 109.46984 * 119.99760 * 11 9 7 15 15 C 1.55162 * 102.94179 * 141.61225 * 4 2 1 16 16 C 1.54914 * 101.58072 * 324.50030 * 15 4 2 17 17 N 1.47021 * 109.88501 * 238.90304 * 2 1 3 18 18 C 1.34770 * 125.64871 * 61.60634 * 17 2 1 19 19 O 1.21566 * 120.00371 * 356.46253 * 18 17 2 20 20 C 1.47730 * 120.00189 * 176.46079 * 18 17 2 21 21 C 1.40118 * 120.35273 * 205.94907 * 20 18 17 22 22 N 1.31262 * 121.14420 * 179.71087 * 21 20 18 23 23 C 1.32715 * 121.80061 * 0.55902 * 22 21 20 24 24 N 1.37116 * 133.39841 * 179.73928 * 23 22 21 25 25 H 0.96992 * 126.59873 * 359.95906 * 24 23 22 26 26 N 1.40196 * 106.81784 * 179.97438 * 24 23 22 27 27 N 1.28669 * 109.50733 * 359.97438 * 26 24 23 28 28 C 1.35333 * 109.99918 * 0.02562 * 27 26 24 29 29 C 1.39429 * 120.34592 * 26.21912 * 20 18 17 30 30 H 1.08996 * 109.47396 * 298.90547 * 1 2 3 31 31 H 1.09001 * 109.47334 * 58.90854 * 1 2 3 32 32 H 1.09004 * 109.47234 * 178.90560 * 1 2 3 33 33 H 0.97005 * 119.99822 * 340.02259 * 6 4 2 34 34 H 0.97006 * 119.99993 * 0.02562 * 10 9 7 35 35 H 1.08997 * 111.00316 * 82.57587 * 15 4 2 36 36 H 1.09001 * 111.00537 * 206.42628 * 15 4 2 37 37 H 1.08997 * 110.36149 * 155.84306 * 16 15 4 38 38 H 1.08997 * 110.36588 * 278.16853 * 16 15 4 39 39 H 1.08002 * 119.42207 * 359.97438 * 21 20 18 40 40 H 1.08005 * 120.95530 * 0.03180 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 1.3064 -1.4457 1.6211 6 7 2.4553 0.1962 2.2876 7 6 2.5574 -0.2223 3.5873 8 1 2.3422 -1.2495 3.8424 9 6 2.9364 0.6738 4.5774 10 7 3.1982 1.9257 4.2667 11 14 3.0749 0.1030 6.3507 12 1 2.7295 -1.3389 6.4350 13 1 2.1392 0.8860 7.1973 14 1 4.4655 0.3082 6.8296 15 6 3.2876 -1.5141 0.6925 16 6 2.8145 -1.8794 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8075 -0.3621 -2.4656 19 8 1.0891 0.5850 -2.7200 20 6 2.4365 -1.1272 -3.5617 21 6 2.6827 -0.5186 -4.7995 22 7 3.2459 -1.1821 -5.7822 23 6 3.5969 -2.4557 -5.6552 24 7 4.1815 -3.3608 -6.5032 25 1 4.4581 -3.2002 -7.4189 26 7 4.3025 -4.5631 -5.7925 27 7 3.8314 -4.4095 -4.6050 28 6 3.3801 -3.1436 -4.4463 29 6 2.7864 -2.4642 -3.3770 30 1 -0.3634 0.4967 0.8996 31 1 -0.3634 0.5307 -0.8800 32 1 -0.3634 -1.0275 -0.0196 33 1 2.6483 1.1189 2.0585 34 1 3.1259 2.2222 3.3459 35 1 4.1654 -0.8688 0.6606 36 1 3.4852 -2.4109 1.2798 37 1 3.6717 -2.0337 -1.3920 38 1 2.1887 -2.7715 -0.7127 39 1 2.4081 0.5155 -4.9463 40 1 2.6044 -2.9611 -2.4355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986354927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:40 Heat of formation + Delta-G solvation = 98.947751 kcal Electronic energy + Delta-G solvation = -25883.198958 eV Core-core repulsion = 22121.207909 eV Total energy + Delta-G solvation = -3761.991048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.59711 -41.63231 -39.78918 -38.69067 -36.35056 -35.37290 -33.79512 -32.79033 -32.24751 -31.79853 -30.43896 -26.90447 -26.15735 -25.77955 -25.03722 -23.90849 -23.58615 -21.96092 -20.84119 -20.04267 -19.40984 -19.02722 -18.10593 -17.61286 -17.43024 -17.23839 -16.61677 -16.34628 -15.85272 -15.44176 -15.27679 -14.84726 -14.56220 -14.49218 -14.24224 -14.08013 -13.76571 -13.72562 -13.42676 -13.21075 -12.98199 -12.78296 -12.72049 -12.65991 -12.32183 -12.12864 -11.81792 -11.70306 -11.43233 -11.20296 -10.91808 -10.75325 -10.54494 -10.31079 -9.80183 -9.10468 -8.34712 -5.30654 -1.03272 -0.58781 0.83207 0.85255 1.50289 1.62428 1.68678 1.73390 1.84395 2.35146 2.57215 2.74568 2.94767 3.05349 3.28749 3.39769 3.44093 3.60886 3.62453 3.72371 3.91034 4.10848 4.13339 4.23679 4.28812 4.35068 4.45843 4.52994 4.56810 4.62188 4.84191 4.92761 4.99178 5.17100 5.19327 5.25091 5.38404 5.62216 5.66293 6.24440 6.37560 6.52431 6.53914 6.91085 7.09798 7.98793 8.11209 9.16859 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.002918 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.887700 B = 9591.834123 C =10305.796252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 H 0.053 0.947 4 C 0.174 3.826 5 H 0.071 0.929 6 N -0.741 5.741 7 C -0.322 4.322 8 H 0.075 0.925 9 C -0.105 4.105 10 N -0.979 5.979 11 Si 1.130 2.870 12 H -0.267 1.267 13 H -0.296 1.296 14 H -0.295 1.295 15 C -0.148 4.148 16 C 0.091 3.909 17 N -0.599 5.599 18 C 0.584 3.416 19 O -0.561 6.561 20 C -0.197 4.197 21 C 0.240 3.760 22 N -0.493 5.493 23 C 0.286 3.714 24 N -0.466 5.466 25 H 0.469 0.531 26 N 0.014 4.986 27 N -0.206 5.206 28 C -0.085 4.085 29 C 0.055 3.945 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.358 0.642 34 H 0.244 0.756 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.201 0.799 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -12.314 -20.987 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 H 0.071 0.929 4 C 0.065 3.935 5 H 0.089 0.911 6 N -0.382 5.382 7 C -0.453 4.453 8 H 0.092 0.908 9 C -0.296 4.296 10 N -0.627 5.627 11 Si 0.956 3.044 12 H -0.191 1.191 13 H -0.223 1.223 14 H -0.222 1.222 15 C -0.189 4.189 16 C -0.031 4.031 17 N -0.332 5.332 18 C 0.373 3.627 19 O -0.440 6.440 20 C -0.206 4.206 21 C 0.067 3.933 22 N -0.207 5.207 23 C 0.040 3.960 24 N -0.194 5.194 25 H 0.320 0.680 26 N 0.031 4.969 27 N -0.087 5.087 28 C -0.211 4.211 29 C 0.025 3.975 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.190 0.810 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.217 0.783 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.461 -12.746 -20.440 24.093 hybrid contribution -0.423 0.987 -1.383 1.751 sum 0.038 -11.759 -21.823 24.790 Atomic orbital electron populations 1.21966 0.93735 1.02750 1.02000 1.21654 0.95176 0.95506 0.84521 0.92905 1.21397 0.94918 0.90953 0.86240 0.91086 1.42538 1.82508 1.08862 1.04313 1.20382 1.41925 0.97014 0.85990 0.90754 1.27107 1.00152 0.94244 1.08106 1.70937 1.54744 1.17393 1.19649 0.82579 0.76128 0.75085 0.70656 1.19138 1.22313 1.22223 1.23403 0.99048 1.01487 0.94956 1.22991 0.95946 0.88490 0.95655 1.48429 1.51557 1.28900 1.04272 1.17605 0.80578 0.83382 0.81101 1.90797 1.39299 1.30538 1.83402 1.20524 1.07978 0.95193 0.96876 1.23294 0.85388 1.00097 0.84557 1.66899 1.16170 1.04604 1.33072 1.19825 0.95413 0.90693 0.90024 1.47541 1.48899 1.06918 1.16011 0.67982 1.81703 1.14968 1.01743 0.98478 1.74904 1.08794 1.15271 1.09741 1.20528 1.10985 0.92424 0.97133 1.21913 0.86191 0.91574 0.97837 0.92451 0.92116 0.91082 0.80957 0.94531 0.92577 0.89132 0.88366 0.87401 0.78267 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 9.09 71.98 0.65 -3.72 16 2 C 0.14 4.29 3.23 45.34 0.15 4.44 16 3 H 0.05 1.96 7.69 -2.38 -0.02 1.94 16 4 C 0.17 6.08 3.11 46.18 0.14 6.22 16 5 H 0.07 2.45 7.84 -2.39 -0.02 2.43 16 6 N -0.74 -34.60 5.25 -317.33 -1.67 -36.27 16 7 C -0.32 -16.84 9.98 84.03 0.84 -16.00 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 10 N -0.98 -59.93 13.70 21.65 0.30 -59.63 16 11 Si 1.13 50.26 29.92 68.60 2.05 52.31 16 12 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 13 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 14 H -0.30 -13.12 7.11 99.48 0.71 -12.42 16 15 C -0.15 -4.19 6.77 31.99 0.22 -3.97 16 16 C 0.09 1.80 5.02 86.86 0.44 2.24 16 17 N -0.60 -15.21 3.06 -791.57 -2.43 -17.64 16 18 C 0.58 14.84 7.48 86.75 0.65 15.48 16 19 O -0.56 -17.75 15.56 -3.92 -0.06 -17.81 16 20 C -0.20 -3.82 5.72 -20.03 -0.11 -3.94 16 21 C 0.24 4.33 10.74 85.23 0.92 5.24 16 22 N -0.49 -9.08 10.37 -191.99 -1.99 -11.07 16 23 C 0.29 5.20 8.49 134.01 1.14 6.34 16 24 N -0.47 -6.60 7.53 -55.38 -0.42 -7.02 16 25 H 0.47 3.25 8.96 -213.27 -1.91 1.34 16 26 N 0.01 0.26 13.82 37.02 0.51 0.77 16 27 N -0.21 -4.20 12.40 -52.15 -0.65 -4.84 16 28 C -0.09 -1.62 7.27 39.63 0.29 -1.33 16 29 C 0.05 0.93 8.10 22.96 0.19 1.11 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.88 6.79 -2.39 -0.02 1.87 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.36 18.07 6.34 -92.70 -0.59 17.49 16 34 H 0.24 14.93 6.78 -92.70 -0.63 14.31 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.10 1.59 6.11 -2.39 -0.01 1.57 16 38 H 0.11 1.52 7.32 -2.39 -0.02 1.51 16 39 H 0.20 3.03 7.85 -2.91 -0.02 3.01 16 40 H 0.19 2.41 4.57 -2.91 -0.01 2.40 16 Total: -1.00 -70.20 334.07 0.39 -69.81 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -1.23 Total: 24.66 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.96 Total: 6.73 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -6.34 Total: -135.70 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.06 Total: -17.81 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.05 Total: 52.31 kcal Total: -70.20 0.39 -69.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986354927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.759 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds