Wall clock time and date at job start Tue Mar 31 2020 12:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.99401 * 2 1 4 4 C 1.54316 * 109.88437 * 121.09726 * 2 1 3 5 5 C 1.55154 * 102.94339 * 97.22532 * 4 2 1 6 6 H 1.08997 * 111.00403 * 277.39148 * 5 4 2 7 7 N 1.46506 * 111.00346 * 153.57490 * 5 4 2 8 8 C 1.36938 * 119.99629 * 155.00077 * 7 5 4 9 9 H 1.07998 * 120.00011 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99969 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99451 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00030 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46965 * 59.99962 * 12 10 8 14 14 H 1.48503 * 109.46904 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47110 * 299.99763 * 12 10 8 16 16 C 1.54910 * 101.58203 * 35.50433 * 5 4 2 17 17 N 1.47023 * 109.88335 * 238.91181 * 2 1 3 18 18 C 1.34774 * 125.65236 * 59.46995 * 17 2 1 19 19 O 1.21518 * 119.99906 * 0.02562 * 18 17 2 20 20 C 1.48120 * 119.99901 * 180.02562 * 18 17 2 21 21 C 1.39817 * 119.37381 * 179.73595 * 20 18 17 22 22 C 1.36964 * 119.60977 * 179.72700 * 21 20 18 23 23 C 1.39819 * 118.25064 * 0.52624 * 22 21 20 24 24 N 1.34651 * 135.00328 * 179.73181 * 23 22 21 25 25 N 1.28677 * 109.15694 * 180.02562 * 24 23 22 26 26 N 1.28763 * 111.84424 * 359.97438 * 25 24 23 27 27 H 0.97004 * 125.85885 * 180.02562 * 26 25 24 28 28 C 1.37245 * 108.28593 * 0.02562 * 26 25 24 29 29 N 1.31957 * 134.71080 * 179.97438 * 28 26 25 30 30 H 1.08999 * 109.47140 * 298.90087 * 1 2 3 31 31 H 1.09008 * 109.47023 * 58.90446 * 1 2 3 32 32 H 1.08998 * 109.46705 * 178.89885 * 1 2 3 33 33 H 1.09002 * 110.71968 * 338.85939 * 4 2 1 34 34 H 1.09005 * 110.72064 * 215.59126 * 4 2 1 35 35 H 0.96995 * 119.99814 * 335.00058 * 7 5 4 36 36 H 0.97000 * 119.99482 * 180.02562 * 11 10 8 37 37 H 1.09006 * 110.36732 * 81.82495 * 16 5 4 38 38 H 1.08995 * 110.37006 * 204.15562 * 16 5 4 39 39 H 1.08002 * 120.19394 * 359.97438 * 21 20 18 40 40 H 1.07999 * 120.87777 * 180.24405 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 6 2.3519 -2.1694 0.6923 6 1 1.4454 -2.7738 0.6609 7 7 3.3938 -2.8311 1.4815 8 6 3.4570 -4.1985 1.5226 9 1 2.7390 -4.7889 0.9729 10 6 4.4438 -4.8255 2.2708 11 7 5.3185 -4.1058 2.9411 12 14 4.5304 -6.6907 2.3263 13 1 4.7321 -7.2179 0.9528 14 1 5.6657 -7.1081 3.1879 15 1 3.2628 -7.2287 2.8819 16 6 2.8569 -1.8497 -0.7369 17 7 2.0300 -0.7139 -1.1840 18 6 1.7741 -0.3852 -2.4657 19 8 1.0752 0.5762 -2.7185 20 6 2.3446 -1.1959 -3.5663 21 6 2.0661 -0.8465 -4.8911 22 6 2.5957 -1.5894 -5.9126 23 6 3.3954 -2.6888 -5.5858 24 7 4.0617 -3.6241 -6.2889 25 7 4.6519 -4.4250 -5.4728 26 7 4.4364 -4.1024 -4.2449 27 1 4.7827 -4.5660 -3.4664 28 6 3.6325 -2.9902 -4.2266 29 7 3.1045 -2.2419 -3.2766 30 1 -0.3633 0.4967 0.8997 31 1 -0.3633 0.5308 -0.8801 32 1 -0.3633 -1.0275 -0.0197 33 1 1.2918 -0.7890 2.0200 34 1 2.9657 -0.2831 1.6182 35 1 4.0389 -2.3007 1.9749 36 1 6.0084 -4.5439 3.4637 37 1 3.9092 -1.5665 -0.7129 38 1 2.7089 -2.7078 -1.3924 39 1 1.4402 0.0067 -5.1078 40 1 2.3971 -1.3355 -6.9434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988938322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:17 Heat of formation + Delta-G solvation = 122.142839 kcal Electronic energy + Delta-G solvation = -26351.358651 eV Core-core repulsion = 22590.373418 eV Total energy + Delta-G solvation = -3760.985234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.59335 -40.49962 -38.86603 -37.39587 -34.55545 -34.24672 -32.45193 -31.71221 -31.39992 -30.65876 -28.40141 -26.07398 -25.40838 -24.28662 -23.84320 -22.91068 -22.14231 -20.40734 -19.49871 -18.96139 -18.57975 -17.41197 -17.38719 -16.82267 -15.77856 -15.69548 -15.41584 -14.75682 -14.37254 -14.03002 -13.77018 -13.55063 -13.25510 -13.15038 -13.01279 -12.94399 -12.58436 -12.42277 -12.05343 -11.91194 -11.88641 -11.87544 -11.25685 -11.07124 -10.88177 -10.71549 -10.34592 -10.18625 -10.05984 -9.84015 -9.58084 -9.52369 -9.30441 -9.00926 -8.42994 -7.14175 -5.91644 -3.22124 -0.11706 0.70687 1.87783 1.93636 2.63541 2.92794 3.32296 3.38390 3.39551 3.48260 3.51982 3.96160 4.11286 4.38643 4.49808 4.51232 4.94404 5.06734 5.10189 5.15625 5.20641 5.42522 5.45631 5.54260 5.58790 5.62033 5.81751 5.86093 5.96536 6.06131 6.17862 6.22064 6.28966 6.36006 6.42887 6.54258 6.69126 6.82510 7.16041 7.55353 7.63693 7.87863 8.11992 8.26183 9.37716 9.92120 10.27239 11.30258 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.005167 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.058371 B = 5417.722413 C = 7947.426990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.169 3.831 6 H 0.066 0.934 7 N -0.711 5.711 8 C -0.248 4.248 9 H 0.071 0.929 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.076 3.924 17 N -0.583 5.583 18 C 0.580 3.420 19 O -0.538 6.538 20 C 0.153 3.847 21 C -0.122 4.122 22 C -0.006 4.006 23 C -0.026 4.026 24 N -0.245 5.245 25 N 0.011 4.989 26 N -0.396 5.396 27 H 0.464 0.536 28 C 0.215 3.785 29 N -0.426 5.426 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.165 0.835 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 6.837 -13.172 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.057 3.943 6 H 0.084 0.916 7 N -0.350 5.350 8 C -0.379 4.379 9 H 0.089 0.911 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.049 4.049 17 N -0.314 5.314 18 C 0.365 3.635 19 O -0.415 6.415 20 C -0.002 4.002 21 C -0.146 4.146 22 C -0.036 4.036 23 C -0.154 4.154 24 N -0.121 5.121 25 N 0.027 4.973 26 N -0.128 5.128 27 H 0.313 0.687 28 C -0.029 4.029 29 N -0.142 5.142 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.183 0.817 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.710 5.920 -13.471 15.783 hybrid contribution 0.148 -0.470 0.671 0.833 sum -5.562 5.449 -12.800 14.982 Atomic orbital electron populations 1.22141 0.94729 1.02466 1.02612 1.21614 0.94594 0.96039 0.84411 0.90793 1.23054 1.01757 0.97338 0.95669 1.21377 0.92823 0.91138 0.88980 0.91610 1.42289 1.33380 1.03979 1.55381 1.19188 1.11176 0.82538 1.24978 0.91133 1.24749 0.98003 0.97844 0.99803 1.69646 1.18938 1.34247 1.34802 0.86293 0.77197 0.85386 0.77399 1.21302 1.21589 1.21125 1.23837 0.94353 0.87821 0.98939 1.48515 1.48443 1.30420 1.04008 1.17318 0.81073 0.83818 0.81253 1.90767 1.39274 1.28282 1.83205 1.21257 0.93887 0.91183 0.93889 1.21698 1.00524 1.01411 0.90979 1.20470 0.92021 0.89962 1.01190 1.20710 1.03455 0.99730 0.91488 1.75405 1.10021 1.02835 1.23851 1.78113 1.14818 1.18128 0.86211 1.44798 1.37266 1.21518 1.09215 0.68672 1.19957 0.98379 0.92800 0.91762 1.66870 1.08648 1.04268 1.34430 0.91716 0.91351 0.92354 0.90057 0.90532 0.77873 0.93258 0.91386 0.88686 0.81719 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.05 37.16 0.34 -1.71 16 2 C 0.14 1.91 3.50 -66.96 -0.23 1.67 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.08 6.14 -24.90 -0.15 -2.23 16 5 C 0.17 3.06 3.71 -65.78 -0.24 2.82 16 6 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 7 N -0.71 -16.22 5.24 -51.35 -0.27 -16.49 16 8 C -0.25 -6.33 9.96 -15.06 -0.15 -6.48 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.40 13.06 55.49 0.72 -25.68 16 12 Si 0.91 21.08 29.55 -169.99 -5.02 16.06 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.08 1.27 5.62 -2.52 -0.01 1.26 16 17 N -0.58 -8.85 3.08 -164.01 -0.51 -9.36 16 18 C 0.58 8.70 7.62 -12.21 -0.09 8.61 16 19 O -0.54 -8.66 15.19 5.35 0.08 -8.58 16 20 C 0.15 2.06 6.72 -82.93 -0.56 1.50 16 21 C -0.12 -1.28 9.55 -39.45 -0.38 -1.66 16 22 C -0.01 -0.06 10.16 -39.45 -0.40 -0.46 16 23 C -0.03 -0.33 7.38 -84.90 -0.63 -0.95 16 24 N -0.24 -3.28 12.43 32.12 0.40 -2.88 16 25 N 0.01 0.14 13.28 60.35 0.80 0.94 16 26 N -0.40 -4.79 7.06 31.13 0.22 -4.57 16 27 H 0.46 4.59 8.96 -190.26 -1.71 2.88 16 28 C 0.22 2.90 8.56 -156.29 -1.34 1.56 16 29 N -0.43 -6.07 6.58 -8.91 -0.06 -6.13 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.93 6.76 -51.92 -0.35 0.57 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.13 7.83 -51.93 -0.41 0.73 16 34 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 35 H 0.39 9.45 7.76 -40.82 -0.32 9.14 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.10 1.64 5.87 -51.93 -0.30 1.34 16 39 H 0.17 1.42 7.61 -52.49 -0.40 1.02 16 40 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -30.26 337.92 -8.47 -38.73 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.98 Total: 9.23 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -3.95 Total: 3.63 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: 1.31 Total: -64.16 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.26 -8.47 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988938322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.868 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds