Wall clock time and date at job start Tue Mar 31 2020 12:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.99401 * 2 1 4 4 C 1.54316 * 109.88437 * 121.09726 * 2 1 3 5 5 C 1.55154 * 102.94339 * 97.22532 * 4 2 1 6 6 H 1.08997 * 111.00403 * 277.39148 * 5 4 2 7 7 N 1.46506 * 111.00346 * 153.57490 * 5 4 2 8 8 C 1.36938 * 119.99629 * 155.00077 * 7 5 4 9 9 H 1.07998 * 120.00011 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99969 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99451 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00030 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46965 * 59.99962 * 12 10 8 14 14 H 1.48503 * 109.46904 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47110 * 299.99763 * 12 10 8 16 16 C 1.54910 * 101.58203 * 35.50433 * 5 4 2 17 17 N 1.47023 * 109.88335 * 238.91181 * 2 1 3 18 18 C 1.34774 * 125.65236 * 59.46995 * 17 2 1 19 19 O 1.21518 * 119.99906 * 0.02562 * 18 17 2 20 20 C 1.48120 * 119.99901 * 180.02562 * 18 17 2 21 21 C 1.39817 * 119.37381 * 179.73595 * 20 18 17 22 22 C 1.36964 * 119.60977 * 179.72700 * 21 20 18 23 23 C 1.39819 * 118.25064 * 0.52624 * 22 21 20 24 24 N 1.34651 * 135.00328 * 179.73181 * 23 22 21 25 25 N 1.28677 * 109.15694 * 180.02562 * 24 23 22 26 26 N 1.28763 * 111.84424 * 359.97438 * 25 24 23 27 27 H 0.97004 * 125.85885 * 180.02562 * 26 25 24 28 28 C 1.37245 * 108.28593 * 0.02562 * 26 25 24 29 29 N 1.31957 * 134.71080 * 179.97438 * 28 26 25 30 30 H 1.08999 * 109.47140 * 298.90087 * 1 2 3 31 31 H 1.09008 * 109.47023 * 58.90446 * 1 2 3 32 32 H 1.08998 * 109.46705 * 178.89885 * 1 2 3 33 33 H 1.09002 * 110.71968 * 338.85939 * 4 2 1 34 34 H 1.09005 * 110.72064 * 215.59126 * 4 2 1 35 35 H 0.96995 * 119.99814 * 335.00058 * 7 5 4 36 36 H 0.97000 * 119.99482 * 180.02562 * 11 10 8 37 37 H 1.09006 * 110.36732 * 81.82495 * 16 5 4 38 38 H 1.08995 * 110.37006 * 204.15562 * 16 5 4 39 39 H 1.08002 * 120.19394 * 359.97438 * 21 20 18 40 40 H 1.07999 * 120.87777 * 180.24405 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 6 2.3519 -2.1694 0.6923 6 1 1.4454 -2.7738 0.6609 7 7 3.3938 -2.8311 1.4815 8 6 3.4570 -4.1985 1.5226 9 1 2.7390 -4.7889 0.9729 10 6 4.4438 -4.8255 2.2708 11 7 5.3185 -4.1058 2.9411 12 14 4.5304 -6.6907 2.3263 13 1 4.7321 -7.2179 0.9528 14 1 5.6657 -7.1081 3.1879 15 1 3.2628 -7.2287 2.8819 16 6 2.8569 -1.8497 -0.7369 17 7 2.0300 -0.7139 -1.1840 18 6 1.7741 -0.3852 -2.4657 19 8 1.0752 0.5762 -2.7185 20 6 2.3446 -1.1959 -3.5663 21 6 2.0661 -0.8465 -4.8911 22 6 2.5957 -1.5894 -5.9126 23 6 3.3954 -2.6888 -5.5858 24 7 4.0617 -3.6241 -6.2889 25 7 4.6519 -4.4250 -5.4728 26 7 4.4364 -4.1024 -4.2449 27 1 4.7827 -4.5660 -3.4664 28 6 3.6325 -2.9902 -4.2266 29 7 3.1045 -2.2419 -3.2766 30 1 -0.3633 0.4967 0.8997 31 1 -0.3633 0.5308 -0.8801 32 1 -0.3633 -1.0275 -0.0197 33 1 1.2918 -0.7890 2.0200 34 1 2.9657 -0.2831 1.6182 35 1 4.0389 -2.3007 1.9749 36 1 6.0084 -4.5439 3.4637 37 1 3.9092 -1.5665 -0.7129 38 1 2.7089 -2.7078 -1.3924 39 1 1.4402 0.0067 -5.1078 40 1 2.3971 -1.3355 -6.9434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988938322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:16 Heat of formation + Delta-G solvation = 101.999758 kcal Electronic energy + Delta-G solvation = -26352.232121 eV Core-core repulsion = 22590.373418 eV Total energy + Delta-G solvation = -3761.858703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.55886 -41.64584 -39.94845 -38.66796 -36.01267 -35.47196 -33.56905 -33.10592 -32.70704 -31.70012 -29.99165 -27.15531 -26.60772 -25.76525 -25.12816 -23.92125 -23.33260 -21.80516 -20.64843 -19.95981 -19.56304 -19.28488 -18.53794 -17.81407 -17.09505 -16.93818 -16.45023 -16.35034 -15.78227 -15.16644 -15.03930 -14.77154 -14.61795 -14.39647 -14.22352 -14.09918 -13.80669 -13.57102 -13.19790 -13.06577 -13.02758 -12.95217 -12.83826 -12.76825 -12.31063 -12.19107 -12.06226 -11.73511 -11.44015 -11.35094 -11.04403 -10.50484 -10.45869 -10.26961 -9.68572 -9.03246 -7.94884 -5.24124 -1.08847 -0.18632 0.85930 0.99412 1.48195 1.49818 1.55974 1.57664 1.79123 2.50591 2.51985 2.56359 2.95834 3.16878 3.34961 3.39048 3.63989 3.75203 3.90453 3.99515 4.12947 4.16964 4.24581 4.40297 4.50062 4.53253 4.67757 4.73365 4.75968 4.94675 5.01541 5.05887 5.15851 5.20940 5.28865 5.34294 5.44764 5.51572 5.54368 6.17415 6.25776 6.39954 6.88645 6.95254 7.33766 8.05788 8.30468 9.27777 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.005167 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.058371 B = 5417.722413 C = 7947.426990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.082 0.918 4 C -0.128 4.128 5 C 0.163 3.837 6 H 0.062 0.938 7 N -0.721 5.721 8 C -0.241 4.241 9 H 0.076 0.924 10 C -0.066 4.066 11 N -0.966 5.966 12 Si 0.965 3.035 13 H -0.277 1.277 14 H -0.299 1.299 15 H -0.280 1.280 16 C 0.096 3.904 17 N -0.586 5.586 18 C 0.580 3.420 19 O -0.547 6.547 20 C 0.137 3.863 21 C -0.113 4.113 22 C 0.013 3.987 23 C -0.033 4.033 24 N -0.256 5.256 25 N 0.005 4.995 26 N -0.391 5.391 27 H 0.470 0.530 28 C 0.198 3.802 29 N -0.449 5.449 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.188 0.812 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 7.418 -14.704 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.100 0.900 4 C -0.166 4.166 5 C 0.052 3.948 6 H 0.081 0.919 7 N -0.360 5.360 8 C -0.373 4.373 9 H 0.094 0.906 10 C -0.258 4.258 11 N -0.616 5.616 12 Si 0.795 3.205 13 H -0.203 1.203 14 H -0.225 1.225 15 H -0.207 1.207 16 C -0.029 4.029 17 N -0.318 5.318 18 C 0.367 3.633 19 O -0.425 6.425 20 C -0.017 4.017 21 C -0.137 4.137 22 C -0.017 4.017 23 C -0.161 4.161 24 N -0.132 5.132 25 N 0.022 4.978 26 N -0.124 5.124 27 H 0.320 0.680 28 C -0.046 4.046 29 N -0.166 5.166 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.209 0.791 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.205 0.795 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.151 6.515 -15.038 17.880 hybrid contribution 0.522 -0.579 1.075 1.328 sum -6.629 5.935 -13.963 16.557 Atomic orbital electron populations 1.22077 0.93359 1.02280 1.03390 1.21702 0.95606 0.96031 0.83350 0.89977 1.22957 1.02133 0.95041 0.96504 1.21518 0.91351 0.92539 0.89391 0.91947 1.42397 1.34249 1.03278 1.56077 1.19535 1.10324 0.83935 1.23457 0.90603 1.25441 0.98326 1.01612 1.00463 1.69792 1.19883 1.35551 1.36342 0.85346 0.76742 0.80980 0.77478 1.20275 1.22525 1.20654 1.23354 0.93464 0.88313 0.97809 1.48515 1.48469 1.30081 1.04699 1.17544 0.80713 0.83752 0.81323 1.90756 1.39713 1.28734 1.83340 1.21265 0.94454 0.91289 0.94658 1.21909 1.00281 1.01853 0.89622 1.20927 0.89814 0.88024 1.02924 1.21100 1.03764 1.00345 0.90925 1.75375 1.10451 1.03227 1.24144 1.78072 1.15008 1.18295 0.86458 1.44832 1.36968 1.21332 1.09280 0.67952 1.20109 0.99000 0.93241 0.92246 1.66706 1.09554 1.05018 1.35309 0.89482 0.92069 0.92904 0.88663 0.90867 0.79076 0.94025 0.93170 0.89156 0.79468 0.78391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.05 71.98 0.65 -2.91 16 2 C 0.14 3.59 3.50 45.34 0.16 3.75 16 3 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.13 -3.68 6.14 31.78 0.20 -3.49 16 5 C 0.16 5.84 3.71 46.38 0.17 6.01 16 6 H 0.06 2.30 8.09 -2.39 -0.02 2.28 16 7 N -0.72 -33.22 5.24 -316.37 -1.66 -34.88 16 8 C -0.24 -12.34 9.96 84.03 0.84 -11.50 16 9 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 10 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 11 N -0.97 -55.95 13.06 21.65 0.28 -55.67 16 12 Si 0.97 43.56 29.55 68.60 2.03 45.59 16 13 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 C 0.10 3.23 5.62 86.85 0.49 3.72 16 17 N -0.59 -17.31 3.08 -791.11 -2.44 -19.75 16 18 C 0.58 16.67 7.62 86.87 0.66 17.33 16 19 O -0.55 -16.61 15.19 -3.77 -0.06 -16.67 16 20 C 0.14 3.51 6.72 42.05 0.28 3.79 16 21 C -0.11 -2.07 9.55 22.35 0.21 -1.85 16 22 C 0.01 0.22 10.16 22.35 0.23 0.45 16 23 C -0.03 -0.78 7.38 39.83 0.29 -0.49 16 24 N -0.26 -6.52 12.43 -52.29 -0.65 -7.17 16 25 N 0.00 0.13 13.28 37.02 0.49 0.62 16 26 N -0.39 -9.35 7.06 -55.42 -0.39 -9.74 16 27 H 0.47 9.39 8.96 -219.84 -1.97 7.41 16 28 C 0.20 5.21 8.56 134.30 1.15 6.36 16 29 N -0.45 -12.58 6.58 -182.09 -1.20 -13.78 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.53 6.76 -2.38 -0.02 1.52 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 2.49 7.83 -2.39 -0.02 2.47 16 34 H 0.07 2.18 8.00 -2.38 -0.02 2.16 16 35 H 0.38 18.78 7.76 -92.71 -0.72 18.06 16 36 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.09 3.14 5.87 -2.39 -0.01 3.12 16 39 H 0.19 2.57 7.61 -2.91 -0.02 2.55 16 40 H 0.20 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -64.77 337.92 0.63 -64.14 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -1.57 Total: 29.20 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 5.80 Total: 18.11 kcal Atomic # 7 Polarization: -134.80 SS G_CDS: -5.56 Total: -140.37 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.06 Total: -16.67 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.77 0.63 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988938322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.135 kcal (2) G-P(sol) polarization free energy of solvation -64.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds