Wall clock time and date at job start Tue Mar 31 2020 12:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.41471 * 2 1 4 4 C 1.55134 * 110.33958 * 122.43629 * 2 1 3 5 5 C 1.55162 * 101.48269 * 156.05854 * 4 2 1 6 6 H 1.08998 * 110.71774 * 82.69680 * 5 4 2 7 7 N 1.46502 * 110.72225 * 205.96761 * 5 4 2 8 8 C 1.36932 * 120.00077 * 199.98061 * 7 5 4 9 9 H 1.07996 * 120.00222 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99979 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00162 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99690 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47010 * 90.00695 * 12 10 8 14 14 H 1.48504 * 109.46725 * 210.00154 * 12 10 8 15 15 H 1.48498 * 109.47257 * 330.00171 * 12 10 8 16 16 C 1.54323 * 102.94457 * 324.33494 * 5 4 2 17 17 N 1.47022 * 107.27193 * 22.18753 * 16 5 4 18 18 C 1.34777 * 125.65052 * 181.01852 * 17 16 5 19 19 O 1.21562 * 120.00063 * 185.32528 * 18 17 16 20 20 C 1.47718 * 119.99519 * 5.33032 * 18 17 16 21 21 C 1.40125 * 120.35012 * 172.15365 * 20 18 17 22 22 N 1.31261 * 121.14948 * 180.02562 * 21 20 18 23 23 C 1.32715 * 121.79956 * 0.02562 * 22 21 20 24 24 N 1.37122 * 133.39950 * 180.02562 * 23 22 21 25 25 H 0.96998 * 126.59309 * 0.02562 * 24 23 22 26 26 N 1.40185 * 106.81358 * 179.97438 * 24 23 22 27 27 N 1.28667 * 109.51499 * 359.97438 * 26 24 23 28 28 C 1.35324 * 109.99887 * 0.02562 * 27 26 24 29 29 C 1.39427 * 120.35455 * 351.93067 * 20 18 17 30 30 H 1.09009 * 109.47066 * 180.84728 * 1 2 3 31 31 H 1.08998 * 109.47636 * 300.84453 * 1 2 3 32 32 H 1.09003 * 109.47158 * 60.84595 * 1 2 3 33 33 H 1.09004 * 111.19170 * 37.96042 * 4 2 1 34 34 H 1.08996 * 110.94409 * 274.05186 * 4 2 1 35 35 H 0.96999 * 119.99603 * 19.97698 * 7 5 4 36 36 H 0.96998 * 119.99684 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.87966 * 262.77523 * 16 5 4 38 38 H 1.09000 * 109.88392 * 141.61000 * 16 5 4 39 39 H 1.08005 * 119.41933 * 0.02562 * 21 20 18 40 40 H 1.08003 * 120.95427 * 359.93549 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7802 1.2277 5 6 3.4796 -1.1972 0.7335 6 1 4.1929 -0.3849 0.8729 7 7 3.9320 -2.4097 1.4202 8 6 5.2652 -2.7205 1.4539 9 1 5.9831 -2.0720 0.9740 10 6 5.6938 -3.8696 2.1041 11 7 6.9752 -4.1681 2.1370 12 14 4.4518 -4.9916 2.9337 13 1 3.9833 -6.0141 1.9640 14 1 5.0901 -5.6649 4.0933 15 1 3.2948 -4.1879 3.4033 16 6 3.2525 -1.4726 -0.7679 17 7 2.0431 -0.7386 -1.1682 18 6 1.4972 -0.7365 -2.4005 19 8 0.5493 -0.0156 -2.6442 20 6 2.0510 -1.6104 -3.4549 21 6 1.3937 -1.7384 -4.6858 22 7 1.8715 -2.5108 -5.6335 23 6 2.9921 -3.2035 -5.4727 24 7 3.6929 -4.0622 -6.2799 25 1 3.4600 -4.3260 -7.1838 26 7 4.8114 -4.4849 -5.5480 27 7 4.7995 -3.9311 -4.3867 28 6 3.7143 -3.1316 -4.2663 29 6 3.2356 -2.3129 -3.2377 30 1 -0.3634 -1.0276 0.0152 31 1 -0.3634 0.5269 0.8823 32 1 -0.3634 0.5006 -0.8975 33 1 1.4548 -1.6554 1.4393 34 1 2.1372 -0.1326 2.1017 35 1 3.2871 -2.9923 1.8510 36 1 7.2746 -4.9713 2.5911 37 1 3.1089 -2.5407 -0.9313 38 1 4.1081 -1.1191 -1.3433 39 1 0.4781 -1.1920 -4.8577 40 1 3.7666 -2.2303 -2.3009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988972379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:04 Heat of formation + Delta-G solvation = 138.859649 kcal Electronic energy + Delta-G solvation = -26344.693481 eV Core-core repulsion = 22584.433142 eV Total energy + Delta-G solvation = -3760.260339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56400 -40.52973 -38.66239 -37.46288 -34.53537 -34.36913 -32.74512 -31.65650 -31.18439 -30.47330 -29.06903 -26.23655 -24.92419 -24.69765 -23.56440 -23.01101 -21.77388 -20.66750 -19.69027 -19.02777 -17.93109 -17.74073 -16.90948 -16.47110 -16.25738 -16.23417 -15.47983 -14.75291 -14.42348 -14.20259 -13.98601 -13.53100 -13.28931 -13.26037 -13.07021 -12.71625 -12.68839 -12.27042 -12.21570 -12.10287 -12.01361 -11.73299 -11.57838 -11.15653 -10.88083 -10.79891 -10.51997 -10.19611 -10.08243 -9.70899 -9.63827 -9.53413 -9.27283 -9.07239 -8.59729 -7.48010 -5.89272 -3.28843 0.00759 0.41943 1.79450 1.89489 2.64298 2.86933 3.29118 3.31838 3.38853 3.47266 3.59759 3.96614 4.08068 4.36772 4.47367 4.47784 4.64028 4.82792 4.93302 4.95320 5.15020 5.24373 5.37186 5.44062 5.46321 5.53527 5.62444 5.68628 5.77121 5.79479 5.90330 5.92714 6.17197 6.22002 6.24089 6.43126 6.47200 6.60209 7.23930 7.50155 7.59526 7.83048 8.07634 8.28757 9.04394 9.76564 9.93124 11.27921 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.005231 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.152559 B = 5351.102996 C = 7643.152268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.080 0.920 4 C -0.140 4.140 5 C 0.178 3.822 6 H 0.078 0.922 7 N -0.736 5.736 8 C -0.260 4.260 9 H 0.094 0.906 10 C 0.015 3.985 11 N -0.924 5.924 12 Si 0.881 3.119 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.054 3.946 17 N -0.602 5.602 18 C 0.586 3.414 19 O -0.539 6.539 20 C -0.206 4.206 21 C 0.235 3.765 22 N -0.495 5.495 23 C 0.290 3.710 24 N -0.487 5.487 25 H 0.452 0.548 26 N 0.016 4.984 27 N -0.179 5.179 28 C -0.072 4.072 29 C 0.026 3.974 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.365 0.635 36 H 0.262 0.738 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.188 0.812 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 5.978 -11.887 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.098 0.902 4 C -0.179 4.179 5 C 0.066 3.934 6 H 0.096 0.904 7 N -0.377 5.377 8 C -0.390 4.390 9 H 0.112 0.888 10 C -0.182 4.182 11 N -0.570 5.570 12 Si 0.710 3.290 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.071 4.071 17 N -0.335 5.335 18 C 0.374 3.626 19 O -0.419 6.419 20 C -0.214 4.214 21 C 0.061 3.939 22 N -0.209 5.209 23 C 0.045 3.955 24 N -0.212 5.212 25 H 0.300 0.700 26 N 0.032 4.968 27 N -0.061 5.061 28 C -0.198 4.198 29 C -0.003 4.003 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.199 0.801 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.204 0.796 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.424 5.316 -12.857 18.002 hybrid contribution -1.164 -0.717 0.604 1.494 sum -12.588 4.600 -12.253 18.159 Atomic orbital electron populations 1.22157 0.94059 1.02591 1.03464 1.21953 0.94957 0.95557 0.83931 0.90196 1.23244 0.97439 1.00512 0.96703 1.21173 0.93513 0.90776 0.87958 0.90380 1.42739 1.06003 1.24777 1.64230 1.19050 0.82238 1.06743 1.30925 0.88810 1.24675 0.95553 0.97978 1.00023 1.69691 1.12813 1.27139 1.47362 0.86629 0.81211 0.81472 0.79651 1.20936 1.21560 1.20206 1.23806 0.85505 0.96883 1.00930 1.48504 1.28140 1.48014 1.08796 1.17329 0.82701 0.81855 0.80705 1.90716 1.28513 1.42049 1.80602 1.20762 0.98465 1.04248 0.97962 1.23050 0.96798 0.88643 0.85365 1.66814 1.10784 1.09883 1.33428 1.19702 0.92420 0.93163 0.90196 1.47560 1.19971 1.36770 1.16902 0.70035 1.81788 1.01166 1.15538 0.98263 1.75003 1.16228 1.05255 1.09594 1.20479 0.96685 1.05594 0.97006 1.23001 0.92368 0.86048 0.98905 0.92731 0.91967 0.89686 0.90539 0.89578 0.80142 0.92798 0.89755 0.90595 0.79557 0.78786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 8.77 37.16 0.33 -1.56 16 2 C 0.14 1.68 3.75 -66.30 -0.25 1.43 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.14 -1.80 6.12 -24.46 -0.15 -1.95 16 5 C 0.18 2.83 3.59 -66.09 -0.24 2.59 16 6 H 0.08 1.26 8.12 -51.93 -0.42 0.83 16 7 N -0.74 -15.19 4.98 -51.65 -0.26 -15.44 16 8 C -0.26 -6.63 10.46 -15.06 -0.16 -6.79 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 10 C 0.01 0.41 5.50 -17.43 -0.10 0.31 16 11 N -0.92 -27.57 13.97 55.49 0.78 -26.80 16 12 Si 0.88 20.78 27.74 -169.99 -4.71 16.07 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.28 -6.04 6.52 56.52 0.37 -5.67 16 16 C 0.05 0.78 4.62 -3.06 -0.01 0.76 16 17 N -0.60 -7.98 3.24 -165.22 -0.54 -8.51 16 18 C 0.59 7.95 7.53 -12.39 -0.09 7.85 16 19 O -0.54 -8.04 14.19 5.31 0.08 -7.96 16 20 C -0.21 -2.59 5.88 -104.87 -0.62 -3.20 16 21 C 0.23 2.67 10.74 -17.09 -0.18 2.49 16 22 N -0.49 -5.98 10.37 -12.03 -0.12 -6.11 16 23 C 0.29 3.73 8.49 -155.93 -1.32 2.41 16 24 N -0.49 -5.32 7.53 31.15 0.23 -5.09 16 25 H 0.45 3.14 8.96 -182.53 -1.64 1.50 16 26 N 0.02 0.21 13.82 60.35 0.83 1.05 16 27 N -0.18 -2.84 12.40 32.17 0.40 -2.44 16 28 C -0.07 -1.05 7.27 -84.74 -0.62 -1.67 16 29 C 0.03 0.35 8.72 -38.51 -0.34 0.02 16 30 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.09 5.93 -51.93 -0.31 0.78 16 33 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.36 7.51 5.58 -40.82 -0.23 7.28 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.08 1.31 6.56 -51.93 -0.34 0.97 16 38 H 0.08 1.05 6.80 -51.93 -0.35 0.69 16 39 H 0.19 1.72 7.66 -52.48 -0.40 1.32 16 40 H 0.20 2.69 2.91 -54.01 -0.16 2.53 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -31.30 329.80 -7.63 -38.93 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.54 Total: 8.65 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -3.75 Total: 2.69 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: 1.33 Total: -63.35 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.08 Total: -7.96 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.71 Total: 16.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.30 -7.63 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988972379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.794 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds