Wall clock time and date at job start Tue Mar 31 2020 12:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.41471 * 2 1 4 4 C 1.55134 * 110.33958 * 122.43629 * 2 1 3 5 5 C 1.55162 * 101.48269 * 156.05854 * 4 2 1 6 6 H 1.08998 * 110.71774 * 82.69680 * 5 4 2 7 7 N 1.46502 * 110.72225 * 205.96761 * 5 4 2 8 8 C 1.36932 * 120.00077 * 199.98061 * 7 5 4 9 9 H 1.07996 * 120.00222 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99979 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00162 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99690 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47010 * 90.00695 * 12 10 8 14 14 H 1.48504 * 109.46725 * 210.00154 * 12 10 8 15 15 H 1.48498 * 109.47257 * 330.00171 * 12 10 8 16 16 C 1.54323 * 102.94457 * 324.33494 * 5 4 2 17 17 N 1.47022 * 107.27193 * 22.18753 * 16 5 4 18 18 C 1.34777 * 125.65052 * 181.01852 * 17 16 5 19 19 O 1.21562 * 120.00063 * 185.32528 * 18 17 16 20 20 C 1.47718 * 119.99519 * 5.33032 * 18 17 16 21 21 C 1.40125 * 120.35012 * 172.15365 * 20 18 17 22 22 N 1.31261 * 121.14948 * 180.02562 * 21 20 18 23 23 C 1.32715 * 121.79956 * 0.02562 * 22 21 20 24 24 N 1.37122 * 133.39950 * 180.02562 * 23 22 21 25 25 H 0.96998 * 126.59309 * 0.02562 * 24 23 22 26 26 N 1.40185 * 106.81358 * 179.97438 * 24 23 22 27 27 N 1.28667 * 109.51499 * 359.97438 * 26 24 23 28 28 C 1.35324 * 109.99887 * 0.02562 * 27 26 24 29 29 C 1.39427 * 120.35455 * 351.93067 * 20 18 17 30 30 H 1.09009 * 109.47066 * 180.84728 * 1 2 3 31 31 H 1.08998 * 109.47636 * 300.84453 * 1 2 3 32 32 H 1.09003 * 109.47158 * 60.84595 * 1 2 3 33 33 H 1.09004 * 111.19170 * 37.96042 * 4 2 1 34 34 H 1.08996 * 110.94409 * 274.05186 * 4 2 1 35 35 H 0.96999 * 119.99603 * 19.97698 * 7 5 4 36 36 H 0.96998 * 119.99684 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.87966 * 262.77523 * 16 5 4 38 38 H 1.09000 * 109.88392 * 141.61000 * 16 5 4 39 39 H 1.08005 * 119.41933 * 0.02562 * 21 20 18 40 40 H 1.08003 * 120.95427 * 359.93549 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7802 1.2277 5 6 3.4796 -1.1972 0.7335 6 1 4.1929 -0.3849 0.8729 7 7 3.9320 -2.4097 1.4202 8 6 5.2652 -2.7205 1.4539 9 1 5.9831 -2.0720 0.9740 10 6 5.6938 -3.8696 2.1041 11 7 6.9752 -4.1681 2.1370 12 14 4.4518 -4.9916 2.9337 13 1 3.9833 -6.0141 1.9640 14 1 5.0901 -5.6649 4.0933 15 1 3.2948 -4.1879 3.4033 16 6 3.2525 -1.4726 -0.7679 17 7 2.0431 -0.7386 -1.1682 18 6 1.4972 -0.7365 -2.4005 19 8 0.5493 -0.0156 -2.6442 20 6 2.0510 -1.6104 -3.4549 21 6 1.3937 -1.7384 -4.6858 22 7 1.8715 -2.5108 -5.6335 23 6 2.9921 -3.2035 -5.4727 24 7 3.6929 -4.0622 -6.2799 25 1 3.4600 -4.3260 -7.1838 26 7 4.8114 -4.4849 -5.5480 27 7 4.7995 -3.9311 -4.3867 28 6 3.7143 -3.1316 -4.2663 29 6 3.2356 -2.3129 -3.2377 30 1 -0.3634 -1.0276 0.0152 31 1 -0.3634 0.5269 0.8823 32 1 -0.3634 0.5006 -0.8975 33 1 1.4548 -1.6554 1.4393 34 1 2.1372 -0.1326 2.1017 35 1 3.2871 -2.9923 1.8510 36 1 7.2746 -4.9713 2.5911 37 1 3.1089 -2.5407 -0.9313 38 1 4.1081 -1.1191 -1.3433 39 1 0.4781 -1.1920 -4.8577 40 1 3.7666 -2.2303 -2.3009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988972379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:03 Heat of formation + Delta-G solvation = 116.077344 kcal Electronic energy + Delta-G solvation = -26345.681396 eV Core-core repulsion = 22584.433142 eV Total energy + Delta-G solvation = -3761.248253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.59600 -41.62345 -39.70783 -38.63665 -36.08109 -35.48076 -33.80172 -33.44901 -32.21337 -31.49230 -30.55030 -27.30419 -25.97132 -25.90410 -25.13919 -24.05359 -22.93248 -22.00725 -20.76904 -20.09754 -19.56545 -18.97229 -17.95423 -17.57047 -17.30625 -17.28944 -16.75225 -16.33878 -15.69951 -15.42901 -15.25388 -14.91930 -14.48040 -14.33301 -14.26296 -14.13326 -13.78278 -13.56510 -13.35691 -13.14669 -13.10802 -12.92489 -12.87601 -12.73659 -12.19546 -12.13229 -11.95033 -11.78848 -11.55186 -11.13311 -11.03370 -10.60301 -10.55690 -10.29459 -9.69405 -9.33894 -7.98328 -5.33724 -1.02153 -0.59393 0.83517 0.86564 1.41196 1.43887 1.50959 1.58009 1.80496 2.44627 2.51520 2.58003 2.97325 3.06162 3.26917 3.31064 3.47760 3.58950 3.67727 3.77967 3.84870 4.13223 4.19204 4.27360 4.36104 4.48763 4.53624 4.57100 4.66351 4.75283 4.85517 4.97581 5.13372 5.13855 5.27969 5.34027 5.56036 5.64397 5.82289 6.24417 6.25889 6.40819 6.55327 6.99292 7.10924 7.84665 8.01880 9.22347 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.005231 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.152559 B = 5351.102996 C = 7643.152268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.093 0.907 4 C -0.128 4.128 5 C 0.167 3.833 6 H 0.077 0.923 7 N -0.739 5.739 8 C -0.230 4.230 9 H 0.066 0.934 10 C -0.056 4.056 11 N -0.980 5.980 12 Si 0.944 3.056 13 H -0.285 1.285 14 H -0.301 1.301 15 H -0.244 1.244 16 C 0.066 3.934 17 N -0.601 5.601 18 C 0.588 3.412 19 O -0.549 6.549 20 C -0.202 4.202 21 C 0.244 3.756 22 N -0.490 5.490 23 C 0.288 3.712 24 N -0.463 5.463 25 H 0.469 0.531 26 N 0.010 4.990 27 N -0.217 5.217 28 C -0.091 4.091 29 C 0.022 3.978 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.368 0.632 36 H 0.256 0.744 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.213 0.787 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.035 6.953 -12.330 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.111 0.889 4 C -0.166 4.166 5 C 0.057 3.943 6 H 0.095 0.905 7 N -0.381 5.381 8 C -0.361 4.361 9 H 0.084 0.916 10 C -0.248 4.248 11 N -0.630 5.630 12 Si 0.772 3.228 13 H -0.212 1.212 14 H -0.228 1.228 15 H -0.169 1.169 16 C -0.059 4.059 17 N -0.333 5.333 18 C 0.377 3.623 19 O -0.429 6.429 20 C -0.211 4.211 21 C 0.071 3.929 22 N -0.205 5.205 23 C 0.043 3.957 24 N -0.191 5.191 25 H 0.321 0.679 26 N 0.027 4.973 27 N -0.098 5.098 28 C -0.217 4.217 29 C -0.008 4.008 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.202 0.798 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.229 0.771 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.392 6.328 -13.343 20.620 hybrid contribution -0.296 -0.889 0.620 1.124 sum -14.688 5.439 -12.723 20.179 Atomic orbital electron populations 1.22081 0.93107 1.02349 1.03936 1.22103 0.95641 0.95857 0.82857 0.88901 1.23184 0.94776 1.00960 0.97685 1.21391 0.95481 0.88844 0.88539 0.90544 1.42690 1.04073 1.26397 1.64967 1.19027 0.83969 1.05168 1.27952 0.91577 1.25416 0.97175 1.00172 1.02078 1.69870 1.15239 1.27993 1.49850 0.85583 0.79736 0.79515 0.77987 1.21200 1.22847 1.16859 1.23464 0.86284 0.96486 0.99706 1.48500 1.27665 1.47900 1.09253 1.17366 0.82464 0.81709 0.80754 1.90722 1.28933 1.42524 1.80743 1.20752 0.98109 1.03894 0.98314 1.23459 0.97056 0.87923 0.84502 1.66943 1.10239 1.09879 1.33405 1.19803 0.92567 0.93427 0.89929 1.47512 1.18757 1.35531 1.17300 0.67894 1.81703 1.01980 1.15521 0.98096 1.74986 1.17524 1.06627 1.10641 1.20678 0.96907 1.06052 0.98057 1.22906 0.92818 0.86461 0.98580 0.93336 0.89738 0.90903 0.90428 0.87667 0.79778 0.93499 0.90828 0.90360 0.77060 0.79622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.77 71.98 0.63 -2.46 16 2 C 0.14 2.93 3.75 45.54 0.17 3.10 16 3 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.13 -2.89 6.12 32.07 0.20 -2.70 16 5 C 0.17 5.07 3.59 46.18 0.17 5.23 16 6 H 0.08 2.37 8.12 -2.39 -0.02 2.35 16 7 N -0.74 -29.63 4.98 -317.32 -1.58 -31.21 16 8 C -0.23 -11.85 10.46 84.04 0.88 -10.97 16 9 H 0.07 3.72 8.06 -2.91 -0.02 3.70 16 10 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 11 N -0.98 -60.49 13.97 21.65 0.30 -60.18 16 12 Si 0.94 42.99 27.74 68.60 1.90 44.90 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 14 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 15 H -0.24 -9.71 6.52 99.48 0.65 -9.06 16 16 C 0.07 1.83 4.62 86.73 0.40 2.23 16 17 N -0.60 -14.74 3.24 -794.91 -2.58 -17.32 16 18 C 0.59 14.76 7.53 86.75 0.65 15.41 16 19 O -0.55 -14.99 14.19 -3.91 -0.06 -15.05 16 20 C -0.20 -4.76 5.88 -20.03 -0.12 -4.88 16 21 C 0.24 4.98 10.74 85.24 0.92 5.90 16 22 N -0.49 -10.81 10.37 -191.97 -1.99 -12.80 16 23 C 0.29 7.03 8.49 134.01 1.14 8.17 16 24 N -0.46 -9.55 7.53 -55.37 -0.42 -9.96 16 25 H 0.47 5.69 8.96 -213.27 -1.91 3.78 16 26 N 0.01 0.27 13.82 37.02 0.51 0.78 16 27 N -0.22 -6.96 12.40 -52.14 -0.65 -7.61 16 28 C -0.09 -2.61 7.27 39.63 0.29 -2.33 16 29 C 0.02 0.58 8.72 22.96 0.20 0.78 16 30 H 0.05 1.01 8.14 -2.38 -0.02 1.00 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.66 5.93 -2.39 -0.01 1.65 16 33 H 0.08 1.79 7.93 -2.38 -0.02 1.77 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.37 14.34 5.58 -92.71 -0.52 13.82 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.07 2.25 6.56 -2.39 -0.02 2.23 16 38 H 0.08 2.15 6.80 -2.39 -0.02 2.13 16 39 H 0.21 3.22 7.66 -2.91 -0.02 3.19 16 40 H 0.19 5.19 2.91 -4.34 -0.01 5.18 16 Total: -1.00 -68.28 329.80 0.08 -68.19 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -1.36 Total: 25.44 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 5.99 Total: 14.82 kcal Atomic # 7 Polarization: -131.91 SS G_CDS: -6.40 Total: -138.30 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.06 Total: -15.05 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.90 Total: 44.90 kcal Total: -68.28 0.08 -68.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988972379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.270 kcal (2) G-P(sol) polarization free energy of solvation -68.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds