Wall clock time and date at job start Tue Mar 31 2020 12:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.87371 * 2 1 4 4 C 1.54328 * 109.88494 * 121.17065 * 2 1 3 5 5 C 1.55157 * 102.93851 * 141.61241 * 4 2 1 6 6 H 1.09004 * 111.03750 * 206.40662 * 5 4 2 7 7 N 1.46503 * 111.00361 * 82.57478 * 5 4 2 8 8 C 1.36940 * 119.99636 * 161.34516 * 7 5 4 9 9 H 1.07998 * 120.00259 * 0.02562 * 8 7 5 10 10 C 1.38820 * 119.99649 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99861 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99841 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47100 * 60.00131 * 12 10 8 14 14 H 1.48500 * 109.47201 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47388 * 300.00102 * 12 10 8 16 16 C 1.54904 * 101.58422 * 324.49983 * 5 4 2 17 17 N 1.47017 * 109.88435 * 238.98387 * 2 1 3 18 18 C 1.34772 * 125.64903 * 61.60165 * 17 2 1 19 19 O 1.21572 * 120.00307 * 173.80237 * 18 17 2 20 20 C 1.47726 * 120.00149 * 353.80063 * 18 17 2 21 21 C 1.40121 * 120.34859 * 16.59892 * 20 18 17 22 22 N 1.31264 * 121.14702 * 179.71790 * 21 20 18 23 23 C 1.32715 * 121.80211 * 0.54478 * 22 21 20 24 24 N 1.37109 * 133.40895 * 179.74223 * 23 22 21 25 25 H 0.97002 * 126.58910 * 0.02695 * 24 23 22 26 26 N 1.40190 * 106.82397 * 180.02562 * 24 23 22 27 27 N 1.28666 * 109.50636 * 359.97438 * 26 24 23 28 28 C 1.35329 * 110.00387 * 359.97438 * 27 26 24 29 29 C 1.39434 * 120.35394 * 196.87178 * 20 18 17 30 30 H 1.08999 * 109.46518 * 197.40397 * 1 2 3 31 31 H 1.09000 * 109.46992 * 317.40205 * 1 2 3 32 32 H 1.08994 * 109.47189 * 77.40837 * 1 2 3 33 33 H 1.08997 * 110.71596 * 23.25246 * 4 2 1 34 34 H 1.09000 * 110.71860 * 259.97429 * 4 2 1 35 35 H 0.96993 * 120.00286 * 341.34578 * 7 5 4 36 36 H 0.97002 * 119.99916 * 180.02562 * 11 10 8 37 37 H 1.09002 * 110.36986 * 155.85161 * 16 5 4 38 38 H 1.09007 * 110.36644 * 278.06017 * 16 5 4 39 39 H 1.07994 * 119.42173 * 359.97246 * 21 20 18 40 40 H 1.07999 * 120.94880 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 1.2417 5 6 3.2877 -1.5150 0.6903 6 1 3.4861 -2.4126 1.2761 7 7 4.4675 -0.6475 0.6484 8 6 5.7190 -1.1972 0.5657 9 1 5.8362 -2.2702 0.5309 10 6 6.8368 -0.3751 0.5255 11 7 6.6938 0.9327 0.5674 12 14 8.5439 -1.1248 0.4119 13 1 8.6481 -1.9329 -0.8296 14 1 9.5594 -0.0417 0.3835 15 1 8.7815 -1.9960 1.5909 16 6 2.8146 -1.8783 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.8074 -0.3586 -2.4661 19 8 2.3631 -0.9564 -3.3672 20 6 0.8880 0.7555 -2.7758 21 6 0.5162 1.6650 -1.7768 22 7 -0.2953 2.6637 -2.0358 23 6 -0.8077 2.8529 -3.2454 24 7 -1.6610 3.7883 -3.7714 25 1 -2.0652 4.5328 -3.2989 26 7 -1.8371 3.4621 -5.1234 27 7 -1.1482 2.4127 -5.4054 28 6 -0.4891 1.9819 -4.3047 29 6 0.3767 0.9098 -4.0637 30 1 -0.3632 -0.9806 0.3074 31 1 -0.3633 0.7565 0.6956 32 1 -0.3633 0.2240 -1.0029 33 1 1.3052 -1.4481 1.6163 34 1 2.3530 -0.0486 2.0200 35 1 4.3621 0.3162 0.6793 36 1 7.4749 1.5071 0.5389 37 1 3.6717 -2.0318 -1.3950 38 1 2.1903 -2.7716 -0.7168 39 1 0.9072 1.5444 -0.7774 40 1 0.6424 0.2221 -4.8529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988972382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:06 Heat of formation + Delta-G solvation = 148.050056 kcal Electronic energy + Delta-G solvation = -26394.650823 eV Core-core repulsion = 22634.789011 eV Total energy + Delta-G solvation = -3759.861813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -42.66442 -40.69748 -38.49875 -37.59213 -34.48991 -34.21552 -32.24849 -31.96104 -31.38801 -30.49362 -28.54086 -26.06062 -25.15490 -24.40051 -23.64404 -22.95600 -22.25892 -20.25367 -19.66138 -18.97614 -18.63346 -17.35871 -16.91834 -16.42512 -16.25574 -15.69894 -15.11169 -14.87792 -14.68731 -14.01379 -13.79809 -13.69608 -13.48181 -13.13229 -12.97961 -12.80661 -12.70338 -12.36570 -12.05285 -12.01182 -11.81590 -11.71897 -11.25240 -11.01617 -10.81144 -10.73933 -10.54660 -10.20437 -10.12011 -9.76315 -9.64385 -9.52212 -9.19117 -9.07594 -8.39538 -7.08027 -5.85437 -3.15607 -0.04810 0.42868 1.72493 1.79828 2.73589 2.98866 3.41060 3.46462 3.46588 3.47023 3.61782 3.94623 4.02121 4.32284 4.37733 4.51365 4.57863 4.66326 4.82552 4.97136 5.19131 5.29587 5.36862 5.40772 5.45103 5.50238 5.62237 5.74669 5.76507 5.86897 5.91981 6.09214 6.18175 6.29971 6.37059 6.42516 6.59046 6.73250 7.21306 7.48459 7.62874 7.69619 8.26959 8.31959 9.44227 9.97013 10.31155 11.36539 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.003420 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.892211 B = 8185.216257 C = 8555.719940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.113 3.887 3 H 0.088 0.912 4 C -0.133 4.133 5 C 0.167 3.833 6 H 0.074 0.926 7 N -0.711 5.711 8 C -0.248 4.248 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.079 3.921 17 N -0.591 5.591 18 C 0.582 3.418 19 O -0.531 6.531 20 C -0.203 4.203 21 C 0.194 3.806 22 N -0.497 5.497 23 C 0.294 3.706 24 N -0.485 5.485 25 H 0.453 0.547 26 N 0.010 4.990 27 N -0.191 5.191 28 C -0.081 4.081 29 C 0.078 3.922 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.385 0.615 36 H 0.257 0.743 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.209 0.791 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.446 1.981 -1.331 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.010 3.990 3 H 0.105 0.895 4 C -0.172 4.172 5 C 0.055 3.945 6 H 0.092 0.908 7 N -0.351 5.351 8 C -0.379 4.379 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.577 5.577 12 Si 0.738 3.262 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.046 4.046 17 N -0.323 5.323 18 C 0.369 3.631 19 O -0.409 6.409 20 C -0.212 4.212 21 C 0.023 3.977 22 N -0.212 5.212 23 C 0.050 3.950 24 N -0.210 5.210 25 H 0.301 0.699 26 N 0.027 4.973 27 N -0.072 5.072 28 C -0.207 4.207 29 C 0.048 3.952 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.219 0.781 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.225 0.775 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.929 2.582 -2.658 19.288 hybrid contribution 1.262 -0.126 0.370 1.321 sum -17.667 2.456 -2.288 17.983 Atomic orbital electron populations 1.22904 0.95140 1.03738 1.02406 1.21973 0.93406 0.96791 0.86859 0.89468 1.23052 0.98501 1.00018 0.95623 1.21380 0.86834 0.94563 0.91713 0.90777 1.42300 1.00300 1.05088 1.87452 1.19165 0.83279 0.91866 1.43550 0.90962 1.24747 0.98005 0.95333 1.02288 1.69637 1.29277 1.01988 1.56789 0.86265 0.84101 0.77825 0.77963 1.21121 1.21700 1.21160 1.23387 0.94922 0.85996 1.00341 1.48214 1.51433 1.28897 1.03724 1.17226 0.81219 0.82667 0.81982 1.90807 1.49991 1.55047 1.45008 1.20844 1.04342 1.01011 0.94954 1.24862 0.87185 0.84587 1.01055 1.66921 1.13855 1.22471 1.17909 1.19721 0.92850 0.90577 0.91887 1.47492 1.38476 1.25684 1.09385 0.69915 1.81705 1.16014 1.09161 0.90414 1.74853 1.04740 1.04465 1.23155 1.20340 1.07059 1.01975 0.91301 1.21032 0.86508 0.91629 0.96058 0.91106 0.90432 0.91716 0.90133 0.89269 0.78130 0.93342 0.89503 0.92473 0.77506 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 7.78 37.16 0.29 -1.36 16 2 C 0.11 1.35 2.74 -66.95 -0.18 1.16 16 3 H 0.09 1.05 6.19 -51.92 -0.32 0.73 16 4 C -0.13 -1.62 6.04 -24.89 -0.15 -1.77 16 5 C 0.17 2.80 3.69 -65.78 -0.24 2.55 16 6 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 7 N -0.71 -15.98 5.27 -51.35 -0.27 -16.25 16 8 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16 12 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 C 0.08 1.30 6.63 -2.53 -0.02 1.28 16 17 N -0.59 -8.99 3.06 -164.16 -0.50 -9.49 16 18 C 0.58 9.58 7.61 -12.39 -0.09 9.49 16 19 O -0.53 -10.63 16.75 5.30 0.09 -10.54 16 20 C -0.20 -2.76 5.07 -104.87 -0.53 -3.29 16 21 C 0.19 2.32 7.40 -17.09 -0.13 2.20 16 22 N -0.50 -5.96 10.37 -12.03 -0.12 -6.09 16 23 C 0.29 3.57 8.49 -155.94 -1.32 2.25 16 24 N -0.49 -4.77 7.52 31.15 0.23 -4.54 16 25 H 0.45 2.76 8.96 -182.53 -1.64 1.13 16 26 N 0.01 0.12 13.82 60.35 0.83 0.95 16 27 N -0.19 -2.54 12.40 32.17 0.40 -2.14 16 28 C -0.08 -1.07 7.27 -84.74 -0.62 -1.68 16 29 C 0.08 1.02 9.75 -38.52 -0.38 0.65 16 30 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.64 4.26 -51.93 -0.22 0.42 16 33 H 0.08 0.77 7.57 -51.93 -0.39 0.38 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.38 9.23 7.81 -40.82 -0.32 8.91 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.09 1.76 7.98 -51.93 -0.41 1.35 16 38 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.21 2.22 2.57 -52.49 -0.13 2.08 16 40 H 0.16 2.01 7.80 -52.49 -0.41 1.60 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -32.46 330.65 -7.76 -40.22 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.49 Total: 7.72 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -3.62 Total: 4.60 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: 1.29 Total: -63.74 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.46 -7.76 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988972382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.272 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds