Wall clock time and date at job start Tue Mar 31 2020 12:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.87371 * 2 1 4 4 C 1.54328 * 109.88494 * 121.17065 * 2 1 3 5 5 C 1.55157 * 102.93851 * 141.61241 * 4 2 1 6 6 H 1.09004 * 111.03750 * 206.40662 * 5 4 2 7 7 N 1.46503 * 111.00361 * 82.57478 * 5 4 2 8 8 C 1.36940 * 119.99636 * 161.34516 * 7 5 4 9 9 H 1.07998 * 120.00259 * 0.02562 * 8 7 5 10 10 C 1.38820 * 119.99649 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99861 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99841 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47100 * 60.00131 * 12 10 8 14 14 H 1.48500 * 109.47201 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47388 * 300.00102 * 12 10 8 16 16 C 1.54904 * 101.58422 * 324.49983 * 5 4 2 17 17 N 1.47017 * 109.88435 * 238.98387 * 2 1 3 18 18 C 1.34772 * 125.64903 * 61.60165 * 17 2 1 19 19 O 1.21572 * 120.00307 * 173.80237 * 18 17 2 20 20 C 1.47726 * 120.00149 * 353.80063 * 18 17 2 21 21 C 1.40121 * 120.34859 * 16.59892 * 20 18 17 22 22 N 1.31264 * 121.14702 * 179.71790 * 21 20 18 23 23 C 1.32715 * 121.80211 * 0.54478 * 22 21 20 24 24 N 1.37109 * 133.40895 * 179.74223 * 23 22 21 25 25 H 0.97002 * 126.58910 * 0.02695 * 24 23 22 26 26 N 1.40190 * 106.82397 * 180.02562 * 24 23 22 27 27 N 1.28666 * 109.50636 * 359.97438 * 26 24 23 28 28 C 1.35329 * 110.00387 * 359.97438 * 27 26 24 29 29 C 1.39434 * 120.35394 * 196.87178 * 20 18 17 30 30 H 1.08999 * 109.46518 * 197.40397 * 1 2 3 31 31 H 1.09000 * 109.46992 * 317.40205 * 1 2 3 32 32 H 1.08994 * 109.47189 * 77.40837 * 1 2 3 33 33 H 1.08997 * 110.71596 * 23.25246 * 4 2 1 34 34 H 1.09000 * 110.71860 * 259.97429 * 4 2 1 35 35 H 0.96993 * 120.00286 * 341.34578 * 7 5 4 36 36 H 0.97002 * 119.99916 * 180.02562 * 11 10 8 37 37 H 1.09002 * 110.36986 * 155.85161 * 16 5 4 38 38 H 1.09007 * 110.36644 * 278.06017 * 16 5 4 39 39 H 1.07994 * 119.42173 * 359.97246 * 21 20 18 40 40 H 1.07999 * 120.94880 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 1.2417 5 6 3.2877 -1.5150 0.6903 6 1 3.4861 -2.4126 1.2761 7 7 4.4675 -0.6475 0.6484 8 6 5.7190 -1.1972 0.5657 9 1 5.8362 -2.2702 0.5309 10 6 6.8368 -0.3751 0.5255 11 7 6.6938 0.9327 0.5674 12 14 8.5439 -1.1248 0.4119 13 1 8.6481 -1.9329 -0.8296 14 1 9.5594 -0.0417 0.3835 15 1 8.7815 -1.9960 1.5909 16 6 2.8146 -1.8783 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.8074 -0.3586 -2.4661 19 8 2.3631 -0.9564 -3.3672 20 6 0.8880 0.7555 -2.7758 21 6 0.5162 1.6650 -1.7768 22 7 -0.2953 2.6637 -2.0358 23 6 -0.8077 2.8529 -3.2454 24 7 -1.6610 3.7883 -3.7714 25 1 -2.0652 4.5328 -3.2989 26 7 -1.8371 3.4621 -5.1234 27 7 -1.1482 2.4127 -5.4054 28 6 -0.4891 1.9819 -4.3047 29 6 0.3767 0.9098 -4.0637 30 1 -0.3632 -0.9806 0.3074 31 1 -0.3633 0.7565 0.6956 32 1 -0.3633 0.2240 -1.0029 33 1 1.3052 -1.4481 1.6163 34 1 2.3530 -0.0486 2.0200 35 1 4.3621 0.3162 0.6793 36 1 7.4749 1.5071 0.5389 37 1 3.6717 -2.0318 -1.3950 38 1 2.1903 -2.7716 -0.7168 39 1 0.9072 1.5444 -0.7774 40 1 0.6424 0.2221 -4.8529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988972382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:05 Heat of formation + Delta-G solvation = 123.721525 kcal Electronic energy + Delta-G solvation = -26395.705788 eV Core-core repulsion = 22634.789011 eV Total energy + Delta-G solvation = -3760.916777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.62820 -41.82833 -39.56540 -38.88683 -36.07296 -35.21142 -33.74997 -32.97451 -32.55496 -31.78918 -29.97482 -27.15790 -26.31686 -25.49976 -25.30289 -23.91582 -23.34039 -21.53122 -20.80884 -19.93869 -19.67057 -19.24725 -17.96182 -17.53283 -17.31273 -16.97558 -16.43178 -16.21254 -16.00981 -15.37784 -15.32206 -14.82570 -14.71207 -14.45981 -14.06522 -13.87289 -13.77557 -13.41212 -13.23816 -13.13558 -12.87127 -12.85973 -12.68579 -12.61413 -12.26001 -12.16247 -12.04823 -11.64386 -11.52163 -11.39197 -10.97840 -10.75368 -10.48648 -10.20231 -9.68155 -8.94429 -7.92418 -5.19050 -1.01631 -0.59748 0.82599 0.86079 1.48937 1.51543 1.56201 1.57862 1.82790 2.39240 2.58194 2.65122 2.97462 3.05809 3.27621 3.38999 3.41285 3.59863 3.63402 3.90407 3.98423 4.03927 4.21863 4.25658 4.43843 4.45127 4.59450 4.67664 4.79845 4.86874 4.89654 5.03780 5.07369 5.22661 5.26521 5.38990 5.42915 5.57887 5.63796 6.25895 6.30450 6.48407 6.53998 7.00612 7.38144 8.13827 8.34623 9.30228 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.003420 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.892211 B = 8185.216257 C = 8555.719940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 H 0.087 0.913 4 C -0.117 4.117 5 C 0.156 3.844 6 H 0.083 0.917 7 N -0.723 5.723 8 C -0.237 4.237 9 H 0.077 0.923 10 C -0.071 4.071 11 N -0.965 5.965 12 Si 0.963 3.037 13 H -0.287 1.287 14 H -0.300 1.300 15 H -0.274 1.274 16 C 0.084 3.916 17 N -0.591 5.591 18 C 0.576 3.424 19 O -0.580 6.580 20 C -0.208 4.208 21 C 0.205 3.795 22 N -0.491 5.491 23 C 0.292 3.708 24 N -0.463 5.463 25 H 0.470 0.530 26 N 0.013 4.987 27 N -0.210 5.210 28 C -0.093 4.093 29 C 0.079 3.921 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.375 0.625 36 H 0.249 0.751 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.224 0.776 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.701 2.034 0.110 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.005 3.995 3 H 0.105 0.895 4 C -0.155 4.155 5 C 0.046 3.954 6 H 0.101 0.899 7 N -0.362 5.362 8 C -0.369 4.369 9 H 0.095 0.905 10 C -0.264 4.264 11 N -0.616 5.616 12 Si 0.793 3.207 13 H -0.213 1.213 14 H -0.226 1.226 15 H -0.200 1.200 16 C -0.041 4.041 17 N -0.322 5.322 18 C 0.365 3.635 19 O -0.461 6.461 20 C -0.217 4.217 21 C 0.033 3.967 22 N -0.206 5.206 23 C 0.046 3.954 24 N -0.191 5.191 25 H 0.322 0.678 26 N 0.030 4.970 27 N -0.091 5.091 28 C -0.218 4.218 29 C 0.049 3.951 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.207 0.793 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.239 0.761 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -21.255 2.624 -1.180 21.449 hybrid contribution 1.854 -0.179 -0.089 1.865 sum -19.401 2.444 -1.268 19.595 Atomic orbital electron populations 1.22831 0.92113 1.05604 1.02670 1.22234 0.95699 0.96299 0.85243 0.89540 1.23026 0.96806 1.00228 0.95473 1.21673 0.86777 0.94838 0.92100 0.89893 1.42463 1.01047 1.05265 1.87459 1.19561 0.84817 0.92117 1.40450 0.90493 1.25430 1.01193 0.95805 1.03976 1.69772 1.29326 1.02977 1.59491 0.85366 0.80491 0.76828 0.78008 1.21349 1.22609 1.19953 1.23186 0.94222 0.87838 0.98867 1.48328 1.50796 1.28677 1.04408 1.17643 0.81127 0.82875 0.81845 1.90774 1.52014 1.56880 1.46439 1.20595 1.04590 1.00818 0.95697 1.25006 0.86716 0.83893 1.01077 1.67016 1.13847 1.22154 1.17564 1.19843 0.93008 0.90767 0.91745 1.47475 1.37403 1.25484 1.08695 0.67810 1.81654 1.15519 1.08671 0.91168 1.74864 1.05505 1.05185 1.23580 1.20409 1.07375 1.02302 0.91745 1.21056 0.86356 0.91717 0.96015 0.89676 0.87689 0.92552 0.86291 0.88949 0.79285 0.94261 0.94174 0.89565 0.76113 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 7.78 71.98 0.56 -1.88 16 2 C 0.11 2.28 2.74 45.34 0.12 2.40 16 3 H 0.09 1.88 6.19 -2.38 -0.01 1.87 16 4 C -0.12 -2.46 6.04 31.78 0.19 -2.27 16 5 C 0.16 4.98 3.69 46.38 0.17 5.16 16 6 H 0.08 2.53 8.13 -2.38 -0.02 2.51 16 7 N -0.72 -32.43 5.27 -316.36 -1.67 -34.10 16 8 C -0.24 -12.38 9.98 84.03 0.84 -11.54 16 9 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 10 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 11 N -0.97 -57.10 13.06 21.65 0.28 -56.82 16 12 Si 0.96 45.48 29.55 68.60 2.03 47.51 16 13 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 14 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 C 0.08 2.73 6.63 86.85 0.58 3.31 16 17 N -0.59 -17.48 3.06 -791.55 -2.43 -19.91 16 18 C 0.58 19.11 7.61 86.75 0.66 19.77 16 19 O -0.58 -24.15 16.75 -3.94 -0.07 -24.22 16 20 C -0.21 -5.54 5.07 -20.02 -0.10 -5.64 16 21 C 0.20 4.50 7.40 85.23 0.63 5.13 16 22 N -0.49 -10.62 10.37 -191.98 -1.99 -12.61 16 23 C 0.29 6.50 8.49 134.01 1.14 7.64 16 24 N -0.46 -8.05 7.52 -55.37 -0.42 -8.47 16 25 H 0.47 4.44 8.96 -213.26 -1.91 2.53 16 26 N 0.01 0.28 13.82 37.02 0.51 0.80 16 27 N -0.21 -5.41 12.40 -52.15 -0.65 -6.05 16 28 C -0.09 -2.34 7.27 39.63 0.29 -2.06 16 29 C 0.08 2.06 9.75 22.96 0.22 2.28 16 30 H 0.08 1.01 7.70 -2.39 -0.02 0.99 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.94 4.26 -2.39 -0.01 0.93 16 33 H 0.12 1.66 7.57 -2.39 -0.02 1.64 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.37 18.09 7.81 -92.71 -0.72 17.37 16 36 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.04 1.68 7.98 -2.39 -0.02 1.66 16 38 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.22 4.16 2.57 -2.91 -0.01 4.15 16 40 H 0.16 4.15 7.80 -2.91 -0.02 4.13 16 Total: -1.00 -72.44 330.65 -0.12 -72.55 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -1.50 Total: 22.51 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 5.77 Total: 18.80 kcal Atomic # 7 Polarization: -130.80 SS G_CDS: -6.35 Total: -137.15 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.07 Total: -24.22 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -72.44 -0.12 -72.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988972382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.276 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds