Wall clock time and date at job start Tue Mar 31 2020 12:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87101 * 2 1 4 4 C 1.54328 * 109.87955 * 121.01271 * 2 1 3 5 5 C 1.55167 * 102.93860 * 141.61049 * 4 2 1 6 6 H 1.08991 * 111.00223 * 206.42158 * 5 4 2 7 7 N 1.46504 * 111.00366 * 82.57043 * 5 4 2 8 8 C 1.36934 * 120.00015 * 154.99606 * 7 5 4 9 9 H 1.08001 * 119.99698 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00315 * 180.02562 * 8 7 5 11 11 N 1.31629 * 119.99661 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00296 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46947 * 59.99900 * 12 10 8 14 14 H 1.48503 * 109.47076 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.46996 * 300.00006 * 12 10 8 16 16 C 1.54906 * 101.58116 * 324.49736 * 5 4 2 17 17 N 1.47020 * 109.88123 * 238.82178 * 2 1 3 18 18 C 1.34772 * 125.64841 * 61.62101 * 17 2 1 19 19 O 1.21546 * 119.99792 * 185.30912 * 18 17 2 20 20 C 1.47872 * 120.00269 * 5.31135 * 18 17 2 21 21 C 1.39454 * 121.11349 * 5.20074 * 20 18 17 22 22 C 1.38616 * 119.37792 * 180.02562 * 21 20 18 23 23 N 1.31587 * 121.63387 * 359.97438 * 22 21 20 24 24 C 1.32204 * 121.86701 * 0.02610 * 23 22 21 25 25 N 1.37211 * 134.67358 * 179.97438 * 24 23 22 26 26 H 0.97006 * 125.86864 * 359.96438 * 25 24 23 27 27 N 1.28786 * 108.26088 * 179.26045 * 25 24 23 28 28 N 1.28693 * 111.75561 * 0.65957 * 27 25 24 29 29 C 1.34392 * 109.15352 * 359.44724 * 28 27 25 30 30 H 1.09003 * 109.46981 * 294.14089 * 1 2 3 31 31 H 1.09004 * 109.46994 * 174.14475 * 1 2 3 32 32 H 1.08992 * 109.46995 * 54.13982 * 1 2 3 33 33 H 1.09002 * 110.72005 * 259.96890 * 4 2 1 34 34 H 1.08998 * 110.72182 * 23.07473 * 4 2 1 35 35 H 0.97003 * 119.99937 * 335.00409 * 7 5 4 36 36 H 0.97004 * 119.99442 * 180.02562 * 11 10 8 37 37 H 1.09001 * 110.36395 * 155.84809 * 16 5 4 38 38 H 1.08997 * 110.36833 * 278.06094 * 16 5 4 39 39 H 1.08011 * 120.31086 * 359.97438 * 21 20 18 40 40 H 1.08003 * 119.18156 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2439 5 6 3.2876 -1.5133 0.6946 6 1 3.4852 -2.4092 1.2830 7 7 4.4675 -0.6459 0.6503 8 6 5.7218 -1.1930 0.7004 9 1 5.8412 -2.2640 0.7722 10 6 6.8396 -0.3712 0.6590 11 7 6.6939 0.9342 0.5720 12 14 8.5507 -1.1175 0.7267 13 1 8.7367 -2.0346 -0.4265 14 1 9.5656 -0.0351 0.6665 15 1 8.7100 -1.8762 1.9932 16 6 2.8145 -1.8805 -0.7340 17 7 2.0300 -0.7158 -1.1829 18 6 1.8076 -0.3654 -2.4651 19 8 2.1894 -1.0855 -3.3668 20 6 1.0991 0.8950 -2.7750 21 6 0.7461 1.7901 -1.7657 22 6 0.0821 2.9610 -2.0968 23 7 -0.2247 3.2516 -3.3430 24 6 0.0825 2.4445 -4.3439 25 7 -0.1025 2.4794 -5.7031 26 1 -0.5413 3.1883 -6.1989 27 7 0.4197 1.4163 -6.2088 28 7 0.9307 0.6584 -5.3029 29 6 0.7635 1.2345 -4.1003 30 1 -0.3633 0.4203 0.9378 31 1 -0.3633 -1.0223 -0.1048 32 1 -0.3633 0.6020 -0.8328 33 1 2.3529 -0.0431 2.0202 34 1 1.3039 -1.4414 1.6222 35 1 4.3601 0.3160 0.5855 36 1 7.4752 1.5084 0.5427 37 1 3.6717 -2.0358 -1.3893 38 1 2.1902 -2.7736 -0.7091 39 1 0.9870 1.5728 -0.7355 40 1 -0.1895 3.6522 -1.3127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989163518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:28 Heat of formation + Delta-G solvation = 155.582109 kcal Electronic energy + Delta-G solvation = -26684.626729 eV Core-core repulsion = 22925.091531 eV Total energy + Delta-G solvation = -3759.535198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.54110 -40.60568 -38.81326 -37.50165 -34.70835 -34.13038 -32.60830 -31.43687 -31.21132 -30.68589 -28.53550 -26.34726 -25.16148 -24.02877 -23.92285 -23.17321 -22.20921 -20.39371 -19.77126 -19.10160 -18.04008 -17.42792 -17.20654 -16.74633 -15.93011 -15.77547 -15.25289 -14.92428 -14.60287 -14.02495 -13.80036 -13.52475 -13.43816 -13.16375 -12.78326 -12.75066 -12.47515 -12.26082 -12.05836 -11.78612 -11.71581 -11.53565 -11.17563 -10.99599 -10.78659 -10.68067 -10.52057 -10.16817 -10.06382 -9.75259 -9.49262 -9.29762 -9.16209 -9.05937 -8.32813 -7.07351 -5.85003 -3.14977 -0.07775 0.70928 1.97261 2.07273 2.86577 3.05552 3.41592 3.46990 3.47300 3.57314 3.60311 4.09083 4.21454 4.33773 4.52513 4.56349 4.68375 4.87191 4.91024 5.07671 5.27291 5.31264 5.39922 5.41932 5.52438 5.54427 5.66027 5.79208 5.80758 5.98005 6.00606 6.17317 6.22324 6.32080 6.41033 6.48269 6.62594 6.76594 7.28632 7.63587 7.74969 8.02903 8.32574 8.36859 9.44824 9.97770 10.32138 11.37046 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.003911 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.230190 B = 7157.537492 C = 7701.997287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.112 3.888 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.168 3.832 6 H 0.078 0.922 7 N -0.710 5.710 8 C -0.248 4.248 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.080 3.920 17 N -0.589 5.589 18 C 0.565 3.435 19 O -0.507 6.507 20 C -0.004 4.004 21 C -0.173 4.173 22 C 0.156 3.844 23 N -0.462 5.462 24 C 0.209 3.791 25 N -0.408 5.408 26 H 0.456 0.544 27 N -0.003 5.003 28 N -0.208 5.208 29 C 0.005 3.995 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.385 0.615 36 H 0.257 0.743 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.196 0.804 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.649 4.786 -1.523 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.009 3.991 3 H 0.108 0.892 4 C -0.175 4.175 5 C 0.055 3.945 6 H 0.096 0.904 7 N -0.350 5.350 8 C -0.379 4.379 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.578 5.578 12 Si 0.738 3.262 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.211 1.211 16 C -0.045 4.045 17 N -0.322 5.322 18 C 0.351 3.649 19 O -0.382 6.382 20 C -0.021 4.021 21 C -0.195 4.195 22 C -0.016 4.016 23 N -0.176 5.176 24 C -0.034 4.034 25 N -0.138 5.138 26 H 0.304 0.696 27 N 0.014 4.986 28 N -0.084 5.084 29 C -0.124 4.124 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.212 0.788 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.374 4.198 -3.639 19.196 hybrid contribution 0.842 0.487 0.569 1.127 sum -17.532 4.685 -3.070 18.405 Atomic orbital electron populations 1.22846 0.95105 1.03612 1.03106 1.22019 0.93639 0.96857 0.86608 0.89186 1.23077 0.98555 1.00183 0.95729 1.21377 0.86865 0.94575 0.91683 0.90409 1.42291 1.00126 1.05363 1.87185 1.19198 0.83155 0.92094 1.43465 0.90935 1.24743 0.97977 0.95356 1.02278 1.69645 1.29231 1.02165 1.56722 0.86264 0.84128 0.77844 0.77927 1.21122 1.21691 1.21131 1.23401 0.94707 0.86295 1.00141 1.48261 1.51430 1.28826 1.03705 1.17441 0.80533 0.84801 0.82077 1.90855 1.50557 1.52133 1.44672 1.19666 0.96816 0.96033 0.89543 1.24055 0.97843 0.94080 1.03565 1.22906 0.92746 0.94787 0.91135 1.66281 1.20809 1.31513 0.99007 1.19829 1.01951 0.94552 0.87072 1.44659 1.45298 1.20128 1.03760 0.69639 1.78242 1.06505 0.91882 1.21988 1.75575 1.15755 1.20775 0.96331 1.20129 1.03262 0.94780 0.94264 0.90554 0.91535 0.91106 0.89356 0.90352 0.78154 0.93354 0.89770 0.92487 0.78777 0.80086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 8.18 37.16 0.30 -1.39 16 2 C 0.11 1.37 2.69 -66.95 -0.18 1.19 16 3 H 0.09 1.07 5.86 -51.93 -0.30 0.76 16 4 C -0.14 -1.72 6.08 -24.89 -0.15 -1.87 16 5 C 0.17 2.90 3.72 -65.78 -0.24 2.65 16 6 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 7 N -0.71 -16.22 5.23 -51.35 -0.27 -16.49 16 8 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 12 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.08 1.40 6.58 -2.53 -0.02 1.38 16 17 N -0.59 -9.60 3.06 -164.12 -0.50 -10.11 16 18 C 0.56 10.46 7.63 -12.32 -0.09 10.36 16 19 O -0.51 -11.44 16.58 5.33 0.09 -11.35 16 20 C 0.00 -0.07 5.60 -104.51 -0.59 -0.65 16 21 C -0.17 -1.93 6.36 -38.99 -0.25 -2.18 16 22 C 0.16 1.46 11.14 -17.52 -0.20 1.27 16 23 N -0.46 -5.32 10.35 -12.38 -0.13 -5.45 16 24 C 0.21 2.78 8.56 -156.21 -1.34 1.44 16 25 N -0.41 -4.55 7.06 31.11 0.22 -4.33 16 26 H 0.46 2.97 8.96 -190.24 -1.71 1.26 16 27 N 0.00 -0.05 13.29 60.35 0.80 0.75 16 28 N -0.21 -3.71 11.93 32.23 0.38 -3.33 16 29 C 0.00 0.08 6.97 -84.72 -0.59 -0.51 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.63 4.41 -51.93 -0.23 0.40 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 35 H 0.38 9.34 7.86 -40.82 -0.32 9.02 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.08 1.80 8.09 -51.93 -0.42 1.38 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.20 1.83 2.37 -52.49 -0.12 1.71 16 40 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -35.58 330.69 -7.90 -43.47 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.59 Total: 6.58 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -3.59 Total: 4.72 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: 1.23 Total: -65.33 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.58 -7.90 -43.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989163518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.056 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds