Wall clock time and date at job start Tue Mar 31 2020 12:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87101 * 2 1 4 4 C 1.54328 * 109.87955 * 121.01271 * 2 1 3 5 5 C 1.55167 * 102.93860 * 141.61049 * 4 2 1 6 6 H 1.08991 * 111.00223 * 206.42158 * 5 4 2 7 7 N 1.46504 * 111.00366 * 82.57043 * 5 4 2 8 8 C 1.36934 * 120.00015 * 154.99606 * 7 5 4 9 9 H 1.08001 * 119.99698 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00315 * 180.02562 * 8 7 5 11 11 N 1.31629 * 119.99661 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00296 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46947 * 59.99900 * 12 10 8 14 14 H 1.48503 * 109.47076 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.46996 * 300.00006 * 12 10 8 16 16 C 1.54906 * 101.58116 * 324.49736 * 5 4 2 17 17 N 1.47020 * 109.88123 * 238.82178 * 2 1 3 18 18 C 1.34772 * 125.64841 * 61.62101 * 17 2 1 19 19 O 1.21546 * 119.99792 * 185.30912 * 18 17 2 20 20 C 1.47872 * 120.00269 * 5.31135 * 18 17 2 21 21 C 1.39454 * 121.11349 * 5.20074 * 20 18 17 22 22 C 1.38616 * 119.37792 * 180.02562 * 21 20 18 23 23 N 1.31587 * 121.63387 * 359.97438 * 22 21 20 24 24 C 1.32204 * 121.86701 * 0.02610 * 23 22 21 25 25 N 1.37211 * 134.67358 * 179.97438 * 24 23 22 26 26 H 0.97006 * 125.86864 * 359.96438 * 25 24 23 27 27 N 1.28786 * 108.26088 * 179.26045 * 25 24 23 28 28 N 1.28693 * 111.75561 * 0.65957 * 27 25 24 29 29 C 1.34392 * 109.15352 * 359.44724 * 28 27 25 30 30 H 1.09003 * 109.46981 * 294.14089 * 1 2 3 31 31 H 1.09004 * 109.46994 * 174.14475 * 1 2 3 32 32 H 1.08992 * 109.46995 * 54.13982 * 1 2 3 33 33 H 1.09002 * 110.72005 * 259.96890 * 4 2 1 34 34 H 1.08998 * 110.72182 * 23.07473 * 4 2 1 35 35 H 0.97003 * 119.99937 * 335.00409 * 7 5 4 36 36 H 0.97004 * 119.99442 * 180.02562 * 11 10 8 37 37 H 1.09001 * 110.36395 * 155.84809 * 16 5 4 38 38 H 1.08997 * 110.36833 * 278.06094 * 16 5 4 39 39 H 1.08011 * 120.31086 * 359.97438 * 21 20 18 40 40 H 1.08003 * 119.18156 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2439 5 6 3.2876 -1.5133 0.6946 6 1 3.4852 -2.4092 1.2830 7 7 4.4675 -0.6459 0.6503 8 6 5.7218 -1.1930 0.7004 9 1 5.8412 -2.2640 0.7722 10 6 6.8396 -0.3712 0.6590 11 7 6.6939 0.9342 0.5720 12 14 8.5507 -1.1175 0.7267 13 1 8.7367 -2.0346 -0.4265 14 1 9.5656 -0.0351 0.6665 15 1 8.7100 -1.8762 1.9932 16 6 2.8145 -1.8805 -0.7340 17 7 2.0300 -0.7158 -1.1829 18 6 1.8076 -0.3654 -2.4651 19 8 2.1894 -1.0855 -3.3668 20 6 1.0991 0.8950 -2.7750 21 6 0.7461 1.7901 -1.7657 22 6 0.0821 2.9610 -2.0968 23 7 -0.2247 3.2516 -3.3430 24 6 0.0825 2.4445 -4.3439 25 7 -0.1025 2.4794 -5.7031 26 1 -0.5413 3.1883 -6.1989 27 7 0.4197 1.4163 -6.2088 28 7 0.9307 0.6584 -5.3029 29 6 0.7635 1.2345 -4.1003 30 1 -0.3633 0.4203 0.9378 31 1 -0.3633 -1.0223 -0.1048 32 1 -0.3633 0.6020 -0.8328 33 1 2.3529 -0.0431 2.0202 34 1 1.3039 -1.4414 1.6222 35 1 4.3601 0.3160 0.5855 36 1 7.4752 1.5084 0.5427 37 1 3.6717 -2.0358 -1.3893 38 1 2.1902 -2.7736 -0.7091 39 1 0.9870 1.5728 -0.7355 40 1 -0.1895 3.6522 -1.3127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989163518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:27 Heat of formation + Delta-G solvation = 127.407627 kcal Electronic energy + Delta-G solvation = -26685.848466 eV Core-core repulsion = 22925.091531 eV Total energy + Delta-G solvation = -3760.756936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.57209 -41.78524 -39.85236 -38.88121 -36.18467 -35.35571 -33.99937 -32.75580 -32.46793 -31.77995 -30.06511 -27.47504 -26.19459 -25.75045 -24.96203 -24.46531 -23.29189 -21.62195 -20.99145 -20.15616 -19.32897 -19.07234 -18.39109 -17.78918 -17.25360 -16.86367 -16.51193 -16.21776 -16.17665 -15.41498 -15.27987 -14.86349 -14.55993 -14.36675 -14.08441 -13.85210 -13.56646 -13.33102 -13.18671 -13.10608 -12.87587 -12.76636 -12.68606 -12.52052 -12.26070 -12.17865 -12.02452 -11.63013 -11.52664 -11.36579 -11.00256 -10.60570 -10.29238 -10.17983 -9.67811 -8.96979 -7.94508 -5.21173 -1.10502 -0.23098 0.94699 1.09017 1.47435 1.50430 1.54918 1.70192 1.83169 2.49657 2.56577 2.62974 3.09601 3.23757 3.32550 3.39822 3.60838 3.70099 3.89767 3.91077 4.03093 4.08506 4.31235 4.33778 4.38693 4.49035 4.65459 4.74003 4.78982 4.92024 5.00464 5.09471 5.15929 5.23677 5.30168 5.42077 5.46103 5.55979 5.63987 6.28553 6.37923 6.47497 6.97045 7.02982 7.36329 8.11193 8.33124 9.28161 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.003911 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.230190 B = 7157.537492 C = 7701.997287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.103 3.897 3 H 0.099 0.901 4 C -0.119 4.119 5 C 0.158 3.842 6 H 0.085 0.915 7 N -0.721 5.721 8 C -0.242 4.242 9 H 0.076 0.924 10 C -0.069 4.069 11 N -0.964 5.964 12 Si 0.963 3.037 13 H -0.289 1.289 14 H -0.298 1.298 15 H -0.272 1.272 16 C 0.084 3.916 17 N -0.588 5.588 18 C 0.554 3.446 19 O -0.570 6.570 20 C -0.042 4.042 21 C -0.144 4.144 22 C 0.174 3.826 23 N -0.456 5.456 24 C 0.206 3.794 25 N -0.379 5.379 26 H 0.475 0.525 27 N -0.010 5.010 28 N -0.265 5.265 29 C -0.025 4.025 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.376 0.624 36 H 0.249 0.751 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.217 0.783 40 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.294 6.415 0.985 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.002 3.998 3 H 0.116 0.884 4 C -0.157 4.157 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.359 5.359 8 C -0.374 4.374 9 H 0.094 0.906 10 C -0.262 4.262 11 N -0.615 5.615 12 Si 0.793 3.207 13 H -0.216 1.216 14 H -0.224 1.224 15 H -0.197 1.197 16 C -0.042 4.042 17 N -0.320 5.320 18 C 0.343 3.657 19 O -0.449 6.449 20 C -0.058 4.058 21 C -0.165 4.165 22 C 0.001 3.999 23 N -0.170 5.170 24 C -0.037 4.037 25 N -0.114 5.114 26 H 0.327 0.673 27 N 0.007 4.993 28 N -0.141 5.141 29 C -0.155 4.155 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.132 0.868 35 H 0.208 0.792 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.232 0.768 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -21.080 5.805 -1.127 21.894 hybrid contribution 1.560 -0.013 -0.148 1.567 sum -19.520 5.792 -1.275 20.401 Atomic orbital electron populations 1.22785 0.91743 1.03865 1.05241 1.22389 0.96202 0.96664 0.84545 0.88390 1.23032 0.96559 1.00397 0.95748 1.21649 0.87057 0.94952 0.91596 0.89683 1.42424 1.00772 1.05518 1.87211 1.19594 0.84755 0.92326 1.40687 0.90570 1.25418 1.01138 0.95835 1.03774 1.69772 1.29349 1.03129 1.59229 0.85370 0.80472 0.76809 0.78070 1.21574 1.22432 1.19749 1.23201 0.93790 0.88118 0.99092 1.48397 1.50627 1.28596 1.04407 1.18047 0.80128 0.85518 0.81995 1.90802 1.53364 1.54254 1.46488 1.19571 0.99477 0.96100 0.90611 1.24391 0.95595 0.93252 1.03309 1.23921 0.90153 0.94369 0.91445 1.66506 1.20528 1.30625 0.99320 1.19915 1.01953 0.93920 0.87907 1.44649 1.43625 1.19611 1.03468 0.67263 1.78126 1.06828 0.92602 1.21750 1.75507 1.18096 1.22746 0.97707 1.20454 1.04607 0.96222 0.94244 0.86496 0.91978 0.90973 0.88514 0.86760 0.79201 0.94179 0.94831 0.90328 0.76777 0.74289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.18 71.98 0.59 -1.77 16 2 C 0.10 2.21 2.69 45.34 0.12 2.33 16 3 H 0.10 1.97 5.86 -2.39 -0.01 1.95 16 4 C -0.12 -2.56 6.08 31.79 0.19 -2.37 16 5 C 0.16 5.28 3.72 46.39 0.17 5.46 16 6 H 0.09 2.73 8.09 -2.39 -0.02 2.71 16 7 N -0.72 -32.92 5.23 -316.37 -1.66 -34.58 16 8 C -0.24 -12.81 9.96 84.03 0.84 -11.97 16 9 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 10 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 11 N -0.96 -57.24 13.06 21.65 0.28 -56.96 16 12 Si 0.96 45.86 29.55 68.60 2.03 47.89 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 14 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 C 0.08 2.98 6.58 86.85 0.57 3.55 16 17 N -0.59 -19.10 3.06 -791.43 -2.43 -21.53 16 18 C 0.55 21.34 7.63 86.80 0.66 22.00 16 19 O -0.57 -27.78 16.58 -3.86 -0.06 -27.84 16 20 C -0.04 -1.29 5.60 -19.79 -0.11 -1.40 16 21 C -0.14 -2.74 6.36 22.65 0.14 -2.60 16 22 C 0.17 2.41 11.14 84.82 0.94 3.35 16 23 N -0.46 -8.91 10.35 -193.09 -2.00 -10.91 16 24 C 0.21 5.21 8.56 134.18 1.15 6.35 16 25 N -0.38 -8.20 7.06 -55.48 -0.39 -8.59 16 26 H 0.48 5.51 8.96 -219.82 -1.97 3.54 16 27 N -0.01 -0.31 13.29 37.02 0.49 0.18 16 28 N -0.27 -10.01 11.93 -51.93 -0.62 -10.63 16 29 C -0.03 -0.84 6.97 40.06 0.28 -0.56 16 30 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 0.97 4.41 -2.39 -0.01 0.95 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.11 1.72 7.85 -2.39 -0.02 1.70 16 35 H 0.38 18.28 7.86 -92.71 -0.73 17.55 16 36 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.03 1.52 8.09 -2.39 -0.02 1.50 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.22 3.10 2.37 -2.91 -0.01 3.09 16 40 H 0.24 0.51 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -85.21 330.69 0.10 -85.11 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -1.56 Total: 18.89 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 6.02 Total: 18.97 kcal Atomic # 7 Polarization: -136.69 SS G_CDS: -6.32 Total: -143.01 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.06 Total: -27.84 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -85.21 0.10 -85.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989163518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.514 kcal (2) G-P(sol) polarization free energy of solvation -85.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds