Wall clock time and date at job start Tue Mar 31 2020 10:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 110.64182 * 2 1 4 4 C 1.34777 * 119.99427 * 300.69873 * 3 2 1 5 5 O 1.21517 * 120.00317 * 359.97438 * 4 3 2 6 6 C 1.48125 * 119.99707 * 180.02562 * 4 3 2 7 7 C 1.39819 * 119.37451 * 179.73196 * 6 4 3 8 8 C 1.36973 * 119.60675 * 179.70394 * 7 6 4 9 9 C 1.39812 * 118.25161 * 0.56792 * 8 7 6 10 10 N 1.34645 * 135.00317 * 179.71586 * 9 8 7 11 11 N 1.28676 * 109.15909 * 179.97438 * 10 9 8 12 12 N 1.28762 * 111.84669 * 0.02562 * 11 10 9 13 13 H 0.97004 * 125.86356 * 179.97438 * 12 11 10 14 14 C 1.37251 * 108.28184 * 0.02562 * 12 11 10 15 15 N 1.31956 * 134.70784 * 180.02562 * 14 12 11 16 16 C 1.55163 * 110.72224 * 123.33138 * 2 1 3 17 17 C 1.54904 * 101.58073 * 153.86702 * 16 2 1 18 18 N 1.47421 * 104.83620 * 322.98869 * 17 16 2 19 19 C 1.36936 * 125.65035 * 204.09628 * 18 17 16 20 20 H 1.08003 * 119.99872 * 180.02562 * 19 18 17 21 21 C 1.38807 * 119.99824 * 0.04033 * 19 18 17 22 22 N 1.31611 * 120.00200 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99647 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47242 * 90.00411 * 23 21 19 25 25 H 1.48497 * 109.47394 * 210.00240 * 23 21 19 26 26 H 1.48505 * 109.47356 * 330.00480 * 23 21 19 27 27 C 1.47025 * 108.70178 * 24.13268 * 18 17 16 28 28 H 1.09002 * 109.47153 * 181.69032 * 1 2 3 29 29 H 1.09001 * 109.46832 * 61.69223 * 1 2 3 30 30 H 1.09004 * 109.47261 * 301.69204 * 1 2 3 31 31 H 0.96991 * 120.00254 * 120.70119 * 3 2 1 32 32 H 1.08002 * 120.19266 * 359.97360 * 7 6 4 33 33 H 1.08003 * 120.87117 * 180.26074 * 8 7 6 34 34 H 1.08995 * 111.00334 * 271.94352 * 16 2 1 35 35 H 1.08999 * 111.00142 * 35.79064 * 16 2 1 36 36 H 1.09007 * 110.36208 * 204.15318 * 17 16 2 37 37 H 1.08996 * 110.45982 * 81.88497 * 17 16 2 38 38 H 0.97004 * 119.99847 * 179.97438 * 22 21 19 39 39 H 1.08999 * 109.88484 * 239.52534 * 27 18 17 40 40 H 1.08998 * 110.01061 * 118.42466 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7263 2.2116 -1.0037 5 8 1.0097 1.8322 -1.9088 6 6 2.2489 3.5976 -1.0041 7 6 1.9131 4.4569 -2.0547 8 6 2.3888 5.7414 -2.0567 9 6 3.2116 6.1440 -1.0005 10 7 3.8500 7.2830 -0.6717 11 7 4.4852 7.1072 0.4335 12 7 4.3272 5.9145 0.8924 13 1 4.7146 5.5642 1.7099 14 6 3.5177 5.2235 0.0259 15 7 3.0314 3.9974 -0.0124 16 6 2.0790 -0.7974 1.2125 17 6 3.4633 -1.2508 0.6855 18 7 3.2446 -1.5495 -0.7415 19 6 4.0044 -2.3945 -1.5056 20 1 3.7612 -2.5466 -2.5468 21 6 5.0868 -3.0557 -0.9418 22 7 5.3826 -2.8709 0.3273 23 14 6.1237 -4.2078 -1.9844 24 1 7.2333 -3.4451 -2.6107 25 1 6.6843 -5.2824 -1.1264 26 1 5.2778 -4.8119 -3.0450 27 6 2.0761 -0.7892 -1.2086 28 1 -0.3633 -1.0272 0.0303 29 1 -0.3633 0.4873 -0.9048 30 1 -0.3634 0.5399 0.8744 31 1 2.6187 1.6737 0.7222 32 1 1.2789 4.1112 -2.8576 33 1 2.1388 6.4236 -2.8557 34 1 2.1850 -0.1553 2.0868 35 1 1.4452 -1.6559 1.4348 36 1 3.7960 -2.1446 1.2135 37 1 4.1946 -0.4504 0.7979 38 1 6.1388 -3.3333 0.7213 39 1 1.3130 -1.4732 -1.5799 40 1 2.3716 -0.0992 -1.9989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046363012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:47 Heat of formation + Delta-G solvation = 105.239429 kcal Electronic energy + Delta-G solvation = -26191.494673 eV Core-core repulsion = 22429.776452 eV Total energy + Delta-G solvation = -3761.718221 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.56274 -41.63814 -40.08636 -38.67410 -35.84355 -35.44445 -33.82445 -32.92973 -32.32463 -31.34942 -30.33783 -27.54201 -26.98506 -25.48461 -25.01336 -23.93603 -22.74573 -22.16353 -20.56006 -20.05081 -19.63090 -19.18871 -18.70995 -17.79528 -17.18240 -16.76070 -16.48069 -16.21887 -15.83063 -15.57930 -15.01257 -14.60783 -14.50636 -14.31550 -14.08411 -14.02788 -13.59464 -13.55833 -13.29815 -13.12615 -12.98081 -12.84567 -12.84252 -12.76469 -12.10809 -12.03854 -11.97029 -11.71146 -11.64543 -11.22192 -10.75310 -10.67530 -10.46149 -10.29060 -10.05066 -8.88363 -7.78613 -5.21930 -1.10780 -0.19894 0.85830 0.97256 1.45537 1.46501 1.55687 1.60492 1.95253 2.48279 2.52478 2.54622 2.99566 3.17508 3.31331 3.50041 3.62658 3.69442 3.72725 4.01799 4.17610 4.19525 4.23362 4.64582 4.67051 4.69714 4.71435 4.82332 4.87909 4.92340 5.04607 5.09542 5.14630 5.35358 5.43822 5.49841 5.59416 5.64327 5.80186 6.11729 6.30971 6.51769 6.89205 7.06523 7.12187 7.77706 8.40857 9.22797 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.003537 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.612234 B = 7914.443437 C = 8615.801109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.166 3.834 3 N -0.683 5.683 4 C 0.570 3.430 5 O -0.541 6.541 6 C 0.142 3.858 7 C -0.117 4.117 8 C 0.013 3.987 9 C -0.035 4.035 10 N -0.257 5.257 11 N 0.009 4.991 12 N -0.385 5.385 13 H 0.473 0.527 14 C 0.203 3.797 15 N -0.454 5.454 16 C -0.127 4.127 17 C 0.155 3.845 18 N -0.624 5.624 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.061 4.061 22 N -0.945 5.945 23 Si 0.977 3.023 24 H -0.290 1.290 25 H -0.289 1.289 26 H -0.271 1.271 27 C 0.136 3.864 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.413 0.587 32 H 0.183 0.817 33 H 0.196 0.804 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.076 0.924 37 H -0.012 1.012 38 H 0.247 0.753 39 H 0.030 0.970 40 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 17.402 2.304 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.080 3.920 3 N -0.333 5.333 4 C 0.354 3.646 5 O -0.418 6.418 6 C -0.012 4.012 7 C -0.141 4.141 8 C -0.018 4.018 9 C -0.162 4.162 10 N -0.134 5.134 11 N 0.025 4.975 12 N -0.119 5.119 13 H 0.325 0.675 14 C -0.042 4.042 15 N -0.171 5.171 16 C -0.166 4.166 17 C 0.030 3.970 18 N -0.350 5.350 19 C -0.369 4.369 20 H 0.091 0.909 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.805 3.195 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.196 1.196 27 C 0.010 3.990 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.250 0.750 32 H 0.200 0.800 33 H 0.213 0.787 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.006 0.994 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -7.905 17.820 2.575 19.664 hybrid contribution 1.039 -1.280 -0.303 1.676 sum -6.867 16.541 2.272 18.053 Atomic orbital electron populations 1.21983 0.91411 1.03238 1.03310 1.21316 0.94821 0.80125 0.95763 1.45838 1.50569 1.11432 1.25493 1.17907 0.80519 0.83951 0.82206 1.90767 1.38152 1.76589 1.36255 1.21213 0.94004 0.94688 0.91317 1.21924 1.00564 0.92501 0.99101 1.20906 0.90127 0.95519 0.95232 1.21037 1.03702 0.92194 0.99288 1.75397 1.10016 1.21591 1.06391 1.78049 1.14571 0.98861 1.05995 1.44721 1.36740 1.08060 1.22408 0.67506 1.19937 0.98924 0.92200 0.93148 1.66186 1.10053 1.14226 1.26598 1.23204 0.97553 0.99738 0.96093 1.21741 0.92272 0.98593 0.84380 1.44785 1.31471 1.50421 1.08304 1.19397 1.06958 1.17301 0.93293 0.90907 1.25532 0.99911 1.02291 0.97660 1.70013 1.30229 1.47130 1.12076 0.85106 0.78513 0.78209 0.77674 1.21707 1.21539 1.19619 1.21700 0.89179 0.92855 0.95289 0.90812 0.91553 0.90506 0.75026 0.79980 0.78664 0.88468 0.89338 0.90602 0.99375 0.94279 0.95225 0.96987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.36 71.98 0.60 -3.26 16 2 C 0.17 5.53 0.81 4.79 0.00 5.54 16 3 N -0.68 -20.80 5.14 -420.11 -2.16 -22.96 16 4 C 0.57 17.14 7.02 86.87 0.61 17.75 16 5 O -0.54 -18.29 13.26 -3.77 -0.05 -18.34 16 6 C 0.14 3.53 6.74 42.05 0.28 3.82 16 7 C -0.12 -2.22 9.55 22.36 0.21 -2.01 16 8 C 0.01 0.20 10.16 22.35 0.23 0.43 16 9 C -0.03 -0.74 7.38 39.83 0.29 -0.44 16 10 N -0.26 -5.84 12.43 -52.30 -0.65 -6.49 16 11 N 0.01 0.18 13.28 37.02 0.49 0.67 16 12 N -0.38 -6.76 7.06 -55.42 -0.39 -7.15 16 13 H 0.47 4.96 8.96 -219.84 -1.97 2.99 16 14 C 0.20 4.50 8.56 134.30 1.15 5.65 16 15 N -0.45 -11.08 9.54 -182.08 -1.74 -12.82 16 16 C -0.13 -4.30 6.09 31.99 0.19 -4.11 16 17 C 0.15 7.34 5.87 86.85 0.51 7.85 16 18 N -0.62 -32.43 3.39 -692.00 -2.35 -34.78 16 19 C -0.24 -13.77 10.27 84.03 0.86 -12.90 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 22 N -0.94 -55.49 10.09 21.65 0.22 -55.27 16 23 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 27 C 0.14 5.92 6.16 86.73 0.53 6.46 16 28 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 29 H 0.07 1.96 6.27 -2.39 -0.01 1.94 16 30 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.41 11.66 7.79 -92.71 -0.72 10.94 16 32 H 0.18 2.88 7.61 -2.91 -0.02 2.86 16 33 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.10 2.65 8.06 -2.39 -0.02 2.63 16 35 H 0.09 2.86 8.04 -2.39 -0.02 2.84 16 36 H 0.08 4.11 5.87 -2.38 -0.01 4.10 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 39 H 0.03 1.30 7.82 -2.39 -0.02 1.28 16 40 H 0.01 0.57 6.68 -2.39 -0.02 0.56 16 Total: -1.00 -72.15 333.24 -0.22 -72.37 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -1.57 Total: 15.01 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 5.95 Total: 21.75 kcal Atomic # 7 Polarization: -132.22 SS G_CDS: -6.58 Total: -138.80 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.05 Total: -18.34 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -72.15 -0.22 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046363012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.610 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds