Wall clock time and date at job start Tue Mar 31 2020 10:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 110.64404 * 2 1 4 4 C 1.34777 * 119.99713 * 300.70402 * 3 2 1 5 5 O 1.21565 * 120.00123 * 359.97438 * 4 3 2 6 6 C 1.47718 * 119.99860 * 179.97438 * 4 3 2 7 7 C 1.40122 * 120.34968 * 0.04403 * 6 4 3 8 8 N 1.31263 * 121.14409 * 179.97438 * 7 6 4 9 9 C 1.32714 * 121.80465 * 359.97438 * 8 7 6 10 10 N 1.37123 * 133.40474 * 179.97438 * 9 8 7 11 11 H 0.97000 * 126.59012 * 0.02562 * 10 9 8 12 12 N 1.40180 * 106.81796 * 180.02562 * 10 9 8 13 13 N 1.28672 * 109.51414 * 0.02562 * 12 10 9 14 14 C 1.35329 * 109.99491 * 0.02562 * 13 12 10 15 15 C 1.39427 * 120.35416 * 179.97438 * 6 4 3 16 16 C 1.55160 * 110.72032 * 123.14258 * 2 1 3 17 17 C 1.55386 * 101.36758 * 153.94529 * 16 2 1 18 18 N 1.47425 * 104.87693 * 323.01952 * 17 16 2 19 19 C 1.36932 * 125.65333 * 204.09959 * 18 17 16 20 20 H 1.07993 * 120.00458 * 180.02562 * 19 18 17 21 21 C 1.38819 * 119.99452 * 0.03337 * 19 18 17 22 22 N 1.31612 * 120.00252 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99798 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47087 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47196 * 119.99983 * 23 21 19 26 26 H 1.48503 * 109.47365 * 240.00349 * 23 21 19 27 27 C 1.47019 * 108.70131 * 24.12838 * 18 17 16 28 28 H 1.08996 * 109.46956 * 59.29698 * 1 2 3 29 29 H 1.09000 * 109.46935 * 179.29694 * 1 2 3 30 30 H 1.08998 * 109.46900 * 299.29824 * 1 2 3 31 31 H 0.97002 * 119.99780 * 120.70177 * 3 2 1 32 32 H 1.07995 * 119.42720 * 359.97036 * 7 6 4 33 33 H 1.08003 * 120.95066 * 0.05046 * 15 6 4 34 34 H 1.09001 * 111.00520 * 272.11300 * 16 2 1 35 35 H 1.08998 * 111.00677 * 35.97000 * 16 2 1 36 36 H 1.09000 * 110.34570 * 204.16402 * 17 16 2 37 37 H 1.09004 * 110.34972 * 81.87002 * 17 16 2 38 38 H 0.97000 * 120.00130 * 179.97438 * 22 21 19 39 39 H 1.09001 * 109.88588 * 239.52774 * 27 18 17 40 40 H 1.09004 * 110.01581 * 118.43364 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7263 2.2117 -1.0036 5 8 1.0094 1.8322 -1.9090 6 6 2.2467 3.5942 -1.0033 7 6 3.0744 4.0390 0.0361 8 7 3.5458 5.2639 0.0517 9 6 3.2637 6.1342 -0.9097 10 7 3.6154 7.4410 -1.1305 11 1 4.1808 7.9910 -0.5659 12 7 3.0009 7.8294 -2.3291 13 7 2.3264 6.8427 -2.8057 14 6 2.4386 5.7686 -1.9902 15 6 1.9206 4.4699 -2.0381 16 6 2.0789 -0.7934 1.2151 17 6 3.4673 -1.2456 0.6837 18 7 3.2471 -1.5462 -0.7426 19 6 4.0077 -2.3901 -1.5071 20 1 3.7633 -2.5438 -2.5478 21 6 5.0927 -3.0481 -0.9443 22 7 5.3901 -2.8613 0.3240 23 14 6.1307 -4.1989 -1.9874 24 1 5.5916 -4.2349 -3.3707 25 1 7.5332 -3.7117 -2.0157 26 1 6.0927 -5.5645 -1.4052 27 6 2.0761 -0.7892 -1.2086 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5029 0.8962 31 1 2.6189 1.6736 0.7223 32 1 3.3288 3.3622 0.8384 33 1 1.2851 4.1552 -2.8527 34 1 2.1821 -0.1490 2.0882 35 1 1.4469 -1.6530 1.4384 36 1 3.8031 -2.1379 1.2121 37 1 4.1955 -0.4419 0.7940 38 1 6.1480 -3.3215 0.7174 39 1 1.3141 -1.4754 -1.5781 40 1 2.3686 -0.0993 -2.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046381847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:41 Heat of formation + Delta-G solvation = 102.384195 kcal Electronic energy + Delta-G solvation = -26044.951326 eV Core-core repulsion = 22283.109293 eV Total energy + Delta-G solvation = -3761.842033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.57269 -41.48674 -39.78634 -38.63932 -35.77318 -35.19483 -33.83345 -32.90282 -32.22312 -31.06830 -30.22512 -27.49496 -26.26147 -25.72735 -25.14508 -23.89547 -22.54520 -22.05864 -20.63839 -19.86404 -19.69325 -18.88579 -17.95604 -17.66591 -17.32392 -16.97054 -16.60454 -16.05047 -15.58224 -15.50886 -15.11304 -14.63011 -14.46393 -14.32420 -14.09041 -13.98530 -13.77035 -13.54231 -13.26167 -13.18135 -13.07918 -12.82888 -12.75191 -12.68396 -12.03509 -11.99456 -11.91587 -11.65900 -11.57991 -11.10273 -10.71777 -10.63078 -10.55315 -10.32132 -9.99299 -8.83236 -7.75694 -5.17900 -1.00465 -0.58350 0.83525 0.86351 1.47088 1.47894 1.57768 1.64927 1.96631 2.49927 2.51477 2.67516 3.01663 3.05955 3.33779 3.41086 3.54655 3.63034 3.77207 3.82871 4.07793 4.12607 4.23621 4.47298 4.63601 4.71132 4.75471 4.85634 4.92487 4.94256 4.98447 5.10203 5.17467 5.41849 5.47876 5.63227 5.65143 5.72352 5.86576 6.26361 6.36672 6.52652 6.56642 7.14983 7.20229 7.82228 8.44504 9.25336 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.003292 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.619137 B = 8503.373231 C = 9153.466631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.172 3.828 3 N -0.693 5.693 4 C 0.572 3.428 5 O -0.559 6.559 6 C -0.201 4.201 7 C 0.226 3.774 8 N -0.490 5.490 9 C 0.289 3.711 10 N -0.464 5.464 11 H 0.470 0.530 12 N 0.014 4.986 13 N -0.212 5.212 14 C -0.088 4.088 15 C 0.082 3.918 16 C -0.127 4.127 17 C 0.152 3.848 18 N -0.624 5.624 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.059 4.059 22 N -0.941 5.941 23 Si 0.973 3.027 24 H -0.274 1.274 25 H -0.292 1.292 26 H -0.288 1.288 27 C 0.135 3.865 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.412 0.588 32 H 0.211 0.789 33 H 0.166 0.834 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.074 0.926 37 H -0.001 1.001 38 H 0.248 0.752 39 H 0.022 0.978 40 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 17.662 5.104 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.085 3.915 3 N -0.345 5.345 4 C 0.358 3.642 5 O -0.438 6.438 6 C -0.210 4.210 7 C 0.053 3.947 8 N -0.204 5.204 9 C 0.043 3.957 10 N -0.192 5.192 11 H 0.321 0.679 12 N 0.030 4.970 13 N -0.093 5.093 14 C -0.214 4.214 15 C 0.051 3.949 16 C -0.166 4.166 17 C 0.028 3.972 18 N -0.350 5.350 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.252 4.252 22 N -0.591 5.591 23 Si 0.802 3.198 24 H -0.199 1.199 25 H -0.219 1.219 26 H -0.215 1.215 27 C 0.009 3.991 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.250 0.750 32 H 0.227 0.773 33 H 0.184 0.816 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.017 0.983 38 H 0.057 0.943 39 H 0.040 0.960 40 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -6.816 18.765 4.076 20.376 hybrid contribution 1.184 -1.210 -0.204 1.706 sum -5.631 17.554 3.872 18.838 Atomic orbital electron populations 1.21988 0.91926 1.02918 1.03301 1.21192 0.94438 0.80262 0.95569 1.45748 1.51598 1.11525 1.25599 1.17856 0.80091 0.84377 0.81857 1.90769 1.38777 1.77601 1.36665 1.20668 1.05764 0.95340 0.99255 1.23569 0.86204 0.89770 0.95173 1.66826 1.25740 1.02925 1.24893 1.19756 0.94680 0.88159 0.93073 1.47509 1.42281 1.08147 1.21237 0.67866 1.81673 1.05511 1.16954 0.92814 1.74891 1.14048 0.97550 1.22781 1.20503 1.07353 0.96665 0.96842 1.21138 0.90636 0.87133 0.95994 1.23307 0.97327 0.99800 0.96138 1.21881 0.92476 0.98897 0.83995 1.44772 1.31126 1.50514 1.08555 1.19375 1.06709 1.17438 0.93196 0.91347 1.25465 0.99866 1.02230 0.97658 1.69998 1.30102 1.47109 1.11907 0.85094 0.78216 0.78441 0.78087 1.19933 1.21889 1.21511 1.21702 0.89009 0.92838 0.95594 0.92024 0.91407 0.90026 0.74986 0.77301 0.81610 0.87413 0.89869 0.90815 0.98310 0.94257 0.96027 0.97079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 8.41 71.98 0.61 -3.11 16 2 C 0.17 5.24 0.80 4.79 0.00 5.25 16 3 N -0.69 -17.39 5.10 -420.49 -2.14 -19.54 16 4 C 0.57 15.43 6.99 86.75 0.61 16.03 16 5 O -0.56 -18.99 13.34 -3.92 -0.05 -19.04 16 6 C -0.20 -4.35 5.88 -20.03 -0.12 -4.47 16 7 C 0.23 3.91 10.69 85.24 0.91 4.82 16 8 N -0.49 -9.37 10.37 -191.98 -1.99 -11.36 16 9 C 0.29 5.88 8.49 134.01 1.14 7.02 16 10 N -0.46 -7.53 7.52 -55.37 -0.42 -7.95 16 11 H 0.47 4.03 8.96 -213.27 -1.91 2.11 16 12 N 0.01 0.28 13.82 37.02 0.51 0.80 16 13 N -0.21 -5.13 12.40 -52.15 -0.65 -5.77 16 14 C -0.09 -2.03 7.27 39.63 0.29 -1.74 16 15 C 0.08 1.84 9.75 22.96 0.22 2.07 16 16 C -0.13 -3.86 6.11 32.15 0.20 -3.66 16 17 C 0.15 6.72 5.88 87.02 0.51 7.23 16 18 N -0.62 -31.28 3.40 -691.02 -2.35 -33.63 16 19 C -0.24 -13.38 10.27 84.04 0.86 -12.52 16 20 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 21 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 22 N -0.94 -53.74 10.09 21.65 0.22 -53.52 16 23 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 C 0.13 5.70 6.16 86.73 0.53 6.23 16 28 H 0.06 1.80 6.20 -2.39 -0.01 1.79 16 29 H 0.07 1.74 8.12 -2.39 -0.02 1.72 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.41 7.64 6.51 -92.71 -0.60 7.04 16 32 H 0.21 2.18 6.39 -2.91 -0.02 2.16 16 33 H 0.17 3.68 7.71 -2.91 -0.02 3.65 16 34 H 0.11 2.38 8.06 -2.39 -0.02 2.36 16 35 H 0.08 2.50 8.05 -2.39 -0.02 2.48 16 36 H 0.07 3.81 5.87 -2.39 -0.01 3.79 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 39 H 0.02 0.95 7.80 -2.39 -0.02 0.93 16 40 H 0.01 0.52 6.67 -2.39 -0.02 0.50 16 Total: -1.00 -72.54 331.89 0.00 -72.54 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -1.39 Total: 9.67 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 6.23 Total: 20.31 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -6.81 Total: -130.97 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.54 0.00 -72.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046381847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.925 kcal (2) G-P(sol) polarization free energy of solvation -72.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds