Wall clock time and date at job start Tue Mar 31 2020 10:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 110.63934 * 2 1 4 4 C 1.34770 * 120.00456 * 56.86129 * 3 2 1 5 5 O 1.21566 * 120.00097 * 0.02562 * 4 3 2 6 6 C 1.47725 * 120.00468 * 179.97438 * 4 3 2 7 7 C 1.40123 * 120.34562 * 359.97315 * 6 4 3 8 8 N 1.31259 * 121.14466 * 180.02562 * 7 6 4 9 9 C 1.32719 * 121.80485 * 359.96200 * 8 7 6 10 10 N 1.37110 * 133.40649 * 180.02562 * 9 8 7 11 11 H 0.97006 * 126.59142 * 0.02669 * 10 9 8 12 12 N 1.40192 * 106.82214 * 180.02562 * 10 9 8 13 13 N 1.28673 * 109.50657 * 0.02562 * 12 10 9 14 14 C 1.35335 * 109.99789 * 359.97438 * 13 12 10 15 15 C 1.39421 * 120.35346 * 180.02562 * 6 4 3 16 16 C 1.55150 * 110.71799 * 236.85433 * 2 1 3 17 17 C 1.54910 * 101.58665 * 205.95640 * 16 2 1 18 18 N 1.47431 * 104.82706 * 37.01082 * 17 16 2 19 19 C 1.36932 * 125.64847 * 155.90734 * 18 17 16 20 20 H 1.07999 * 120.00076 * 179.97438 * 19 18 17 21 21 C 1.38820 * 119.99975 * 359.97438 * 19 18 17 22 22 N 1.31625 * 119.99712 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99948 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47481 * 60.00070 * 23 21 19 25 25 H 1.48507 * 109.47143 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47249 * 299.99756 * 23 21 19 27 27 C 1.47020 * 108.70415 * 335.87520 * 18 17 16 28 28 H 1.08995 * 109.47177 * 60.70116 * 1 2 3 29 29 H 1.09000 * 109.47196 * 180.70364 * 1 2 3 30 30 H 1.09007 * 109.46807 * 300.69729 * 1 2 3 31 31 H 0.97005 * 119.99649 * 236.85377 * 3 2 1 32 32 H 1.07995 * 119.42524 * 0.02907 * 7 6 4 33 33 H 1.07999 * 120.95719 * 359.97438 * 15 6 4 34 34 H 1.09002 * 111.00819 * 324.03551 * 16 2 1 35 35 H 1.09007 * 111.00336 * 87.84483 * 16 2 1 36 36 H 1.08996 * 110.36891 * 155.84573 * 17 16 2 37 37 H 1.09000 * 110.36614 * 278.17555 * 17 16 2 38 38 H 0.97003 * 119.99310 * 180.02562 * 22 21 19 39 39 H 1.09004 * 109.88165 * 241.64238 * 27 18 17 40 40 H 1.09003 * 109.88460 * 120.47329 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.6869 2.2265 0.9773 5 8 0.9344 1.8605 1.8591 6 6 2.2080 3.6088 0.9776 7 6 3.0771 4.0379 -0.0344 8 7 3.5499 5.2623 -0.0492 9 6 3.2294 6.1472 0.8867 10 7 3.5729 7.4570 1.1020 11 1 4.1609 7.9985 0.5524 12 7 2.9110 7.8634 2.2691 13 7 2.2180 6.8836 2.7334 14 6 2.3627 5.7973 1.9394 15 6 1.8413 4.4998 1.9853 16 6 2.0789 -0.7935 -1.2150 17 6 3.4652 -1.2448 -0.6914 18 7 3.2494 -1.5471 0.7354 19 6 4.0124 -2.3919 1.4964 20 1 3.7713 -2.5468 2.5377 21 6 5.0958 -3.0491 0.9296 22 7 5.3893 -2.8606 -0.3396 23 14 6.1362 -4.2021 1.9676 24 1 5.2850 -5.3000 2.4921 25 1 7.2230 -4.7747 1.1331 26 1 6.7275 -3.4488 3.1026 27 6 2.0798 -0.7906 1.2059 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8837 31 1 2.6472 1.6629 -0.7034 32 1 3.3627 3.3493 -0.8157 33 1 1.1736 4.1972 2.7784 34 1 1.4468 -1.6530 -1.4383 35 1 2.1813 -0.1492 -2.0884 36 1 3.7991 -2.1365 -1.2217 37 1 4.1929 -0.4410 -0.8030 38 1 6.1461 -3.3202 -0.7358 39 1 2.3775 -0.1015 1.9963 40 1 1.3190 -1.4773 1.5770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046381848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:45 Heat of formation + Delta-G solvation = 126.899498 kcal Electronic energy + Delta-G solvation = -26032.967131 eV Core-core repulsion = 22272.188161 eV Total energy + Delta-G solvation = -3760.778970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.71674 -40.33453 -38.75216 -37.29355 -34.35573 -34.14880 -32.35152 -31.98712 -30.88511 -29.75623 -28.71316 -25.75372 -25.29459 -24.75339 -23.58842 -23.03438 -21.35938 -20.37956 -19.38230 -19.01486 -18.63423 -17.28715 -16.78454 -16.62757 -16.46610 -15.53220 -14.86493 -14.70867 -14.42742 -14.09493 -13.75415 -13.58841 -13.36053 -13.19333 -12.87731 -12.82164 -12.34849 -12.30501 -12.10487 -11.80549 -11.78835 -11.60451 -10.97361 -10.86359 -10.56841 -10.38942 -10.27510 -10.13813 -9.94353 -9.70543 -9.69483 -9.43860 -9.37639 -8.78816 -8.65983 -6.84503 -5.67673 -3.08083 -0.15717 0.31348 1.62623 1.70175 2.65197 3.02849 3.40399 3.44591 3.45736 3.46662 3.52090 3.87760 3.91561 4.28246 4.35841 4.47937 4.69660 4.94287 5.11513 5.33392 5.35482 5.43866 5.51009 5.52352 5.68592 5.76620 5.97129 6.12036 6.17232 6.27373 6.29001 6.40283 6.45842 6.63724 6.76561 7.02843 7.09289 7.38407 7.39955 7.59116 7.64343 7.80432 8.26656 8.33698 9.20792 9.81428 10.45498 11.36577 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017108 B = 0.003272 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.259635 B = 8556.128500 C = 9204.307127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 N -0.699 5.699 4 C 0.569 3.431 5 O -0.526 6.526 6 C -0.200 4.200 7 C 0.216 3.784 8 N -0.489 5.489 9 C 0.293 3.707 10 N -0.484 5.484 11 H 0.454 0.546 12 N 0.016 4.984 13 N -0.191 5.191 14 C -0.075 4.075 15 C 0.083 3.917 16 C -0.147 4.147 17 C 0.151 3.849 18 N -0.604 5.604 19 C -0.219 4.219 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.925 5.925 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.137 3.863 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.397 0.603 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.011 0.989 38 H 0.252 0.748 39 H 0.031 0.969 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 16.584 -3.592 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.074 3.926 3 N -0.350 5.350 4 C 0.354 3.646 5 O -0.403 6.403 6 C -0.209 4.209 7 C 0.043 3.957 8 N -0.203 5.203 9 C 0.048 3.952 10 N -0.209 5.209 11 H 0.302 0.698 12 N 0.033 4.967 13 N -0.072 5.072 14 C -0.200 4.200 15 C 0.052 3.948 16 C -0.186 4.186 17 C 0.027 3.973 18 N -0.330 5.330 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.574 5.574 23 Si 0.745 3.255 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.011 3.989 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.232 0.768 32 H 0.197 0.803 33 H 0.185 0.815 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.029 0.971 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.551 17.645 -2.586 18.999 hybrid contribution 1.128 -0.942 -0.244 1.490 sum -5.423 16.703 -2.830 17.788 Atomic orbital electron populations 1.22076 0.93858 1.02523 1.02615 1.21422 0.93260 0.79670 0.98253 1.45896 1.49214 1.12276 1.27591 1.17589 0.81107 0.83611 0.82244 1.90768 1.35910 1.77473 1.36166 1.20908 1.04297 0.96688 0.98972 1.23143 0.87775 0.89929 0.94869 1.66700 1.26390 1.02338 1.24833 1.19598 0.94650 0.87523 0.93433 1.47520 1.41324 1.08281 1.23803 0.69807 1.81732 1.04383 1.17192 0.93421 1.74896 1.13696 0.97145 1.21472 1.20404 1.05937 0.96445 0.97230 1.21092 0.91410 0.86994 0.95341 1.23380 1.01305 0.98926 0.94965 1.21957 0.89313 1.00730 0.85345 1.44489 1.30590 1.50527 1.07389 1.19045 1.06010 1.16749 0.92956 0.90576 1.24753 0.98755 1.00703 0.96448 1.69758 1.30205 1.46574 1.10829 0.86155 0.79768 0.80636 0.78974 1.21147 1.21595 1.21280 1.21605 0.90370 0.93215 0.93759 0.93061 0.91633 0.90441 0.76798 0.80291 0.81512 0.90332 0.91758 0.87374 0.97126 0.93737 0.95082 0.94978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.38 37.16 0.31 -1.87 16 2 C 0.16 2.58 0.81 -129.99 -0.10 2.48 16 3 N -0.70 -9.57 5.09 -46.88 -0.24 -9.81 16 4 C 0.57 8.01 6.99 -12.39 -0.09 7.92 16 5 O -0.53 -8.92 13.39 5.31 0.07 -8.85 16 6 C -0.20 -2.30 5.88 -104.87 -0.62 -2.92 16 7 C 0.22 2.15 10.69 -17.09 -0.18 1.97 16 8 N -0.49 -5.28 10.37 -12.03 -0.12 -5.40 16 9 C 0.29 3.24 8.49 -155.93 -1.32 1.92 16 10 N -0.48 -4.36 7.52 31.15 0.23 -4.12 16 11 H 0.45 2.43 8.96 -182.52 -1.64 0.80 16 12 N 0.02 0.17 13.82 60.35 0.83 1.01 16 13 N -0.19 -2.36 12.40 32.17 0.40 -1.96 16 14 C -0.07 -0.89 7.27 -84.74 -0.62 -1.51 16 15 C 0.08 0.95 9.75 -38.52 -0.38 0.58 16 16 C -0.15 -2.42 6.07 -24.59 -0.15 -2.57 16 17 C 0.15 3.37 5.87 -2.52 -0.01 3.35 16 18 N -0.60 -14.93 3.39 -170.06 -0.58 -15.51 16 19 C -0.22 -6.04 10.27 -15.06 -0.15 -6.19 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.32 5.49 -17.42 -0.10 -0.41 16 22 N -0.92 -26.04 10.09 55.49 0.56 -25.48 16 23 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.14 2.87 6.20 -3.06 -0.02 2.85 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 30 H 0.08 1.20 6.03 -51.92 -0.31 0.89 16 31 H 0.40 4.38 6.52 -40.82 -0.27 4.12 16 32 H 0.18 1.28 6.39 -52.49 -0.34 0.95 16 33 H 0.17 1.81 7.71 -52.49 -0.40 1.40 16 34 H 0.08 1.29 8.05 -51.93 -0.42 0.88 16 35 H 0.06 0.86 8.07 -51.92 -0.42 0.44 16 36 H 0.11 2.76 5.87 -51.93 -0.30 2.46 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.03 0.70 6.90 -51.93 -0.36 0.35 16 40 H 0.03 0.69 7.81 -51.93 -0.41 0.28 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -32.70 331.99 -7.97 -40.67 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.67 Total: 2.01 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -3.43 Total: 5.60 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 1.09 Total: -61.28 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.07 Total: -8.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.70 -7.97 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046381848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.570 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds