Wall clock time and date at job start Tue Mar 31 2020 10:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 110.63934 * 2 1 4 4 C 1.34770 * 120.00456 * 56.86129 * 3 2 1 5 5 O 1.21566 * 120.00097 * 0.02562 * 4 3 2 6 6 C 1.47725 * 120.00468 * 179.97438 * 4 3 2 7 7 C 1.40123 * 120.34562 * 359.97315 * 6 4 3 8 8 N 1.31259 * 121.14466 * 180.02562 * 7 6 4 9 9 C 1.32719 * 121.80485 * 359.96200 * 8 7 6 10 10 N 1.37110 * 133.40649 * 180.02562 * 9 8 7 11 11 H 0.97006 * 126.59142 * 0.02669 * 10 9 8 12 12 N 1.40192 * 106.82214 * 180.02562 * 10 9 8 13 13 N 1.28673 * 109.50657 * 0.02562 * 12 10 9 14 14 C 1.35335 * 109.99789 * 359.97438 * 13 12 10 15 15 C 1.39421 * 120.35346 * 180.02562 * 6 4 3 16 16 C 1.55150 * 110.71799 * 236.85433 * 2 1 3 17 17 C 1.54910 * 101.58665 * 205.95640 * 16 2 1 18 18 N 1.47431 * 104.82706 * 37.01082 * 17 16 2 19 19 C 1.36932 * 125.64847 * 155.90734 * 18 17 16 20 20 H 1.07999 * 120.00076 * 179.97438 * 19 18 17 21 21 C 1.38820 * 119.99975 * 359.97438 * 19 18 17 22 22 N 1.31625 * 119.99712 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99948 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47481 * 60.00070 * 23 21 19 25 25 H 1.48507 * 109.47143 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47249 * 299.99756 * 23 21 19 27 27 C 1.47020 * 108.70415 * 335.87520 * 18 17 16 28 28 H 1.08995 * 109.47177 * 60.70116 * 1 2 3 29 29 H 1.09000 * 109.47196 * 180.70364 * 1 2 3 30 30 H 1.09007 * 109.46807 * 300.69729 * 1 2 3 31 31 H 0.97005 * 119.99649 * 236.85377 * 3 2 1 32 32 H 1.07995 * 119.42524 * 0.02907 * 7 6 4 33 33 H 1.07999 * 120.95719 * 359.97438 * 15 6 4 34 34 H 1.09002 * 111.00819 * 324.03551 * 16 2 1 35 35 H 1.09007 * 111.00336 * 87.84483 * 16 2 1 36 36 H 1.08996 * 110.36891 * 155.84573 * 17 16 2 37 37 H 1.09000 * 110.36614 * 278.17555 * 17 16 2 38 38 H 0.97003 * 119.99310 * 180.02562 * 22 21 19 39 39 H 1.09004 * 109.88165 * 241.64238 * 27 18 17 40 40 H 1.09003 * 109.88460 * 120.47329 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.6869 2.2265 0.9773 5 8 0.9344 1.8605 1.8591 6 6 2.2080 3.6088 0.9776 7 6 3.0771 4.0379 -0.0344 8 7 3.5499 5.2623 -0.0492 9 6 3.2294 6.1472 0.8867 10 7 3.5729 7.4570 1.1020 11 1 4.1609 7.9985 0.5524 12 7 2.9110 7.8634 2.2691 13 7 2.2180 6.8836 2.7334 14 6 2.3627 5.7973 1.9394 15 6 1.8413 4.4998 1.9853 16 6 2.0789 -0.7935 -1.2150 17 6 3.4652 -1.2448 -0.6914 18 7 3.2494 -1.5471 0.7354 19 6 4.0124 -2.3919 1.4964 20 1 3.7713 -2.5468 2.5377 21 6 5.0958 -3.0491 0.9296 22 7 5.3893 -2.8606 -0.3396 23 14 6.1362 -4.2021 1.9676 24 1 5.2850 -5.3000 2.4921 25 1 7.2230 -4.7747 1.1331 26 1 6.7275 -3.4488 3.1026 27 6 2.0798 -0.7906 1.2059 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8837 31 1 2.6472 1.6629 -0.7034 32 1 3.3627 3.3493 -0.8157 33 1 1.1736 4.1972 2.7784 34 1 1.4468 -1.6530 -1.4383 35 1 2.1813 -0.1492 -2.0884 36 1 3.7991 -2.1365 -1.2217 37 1 4.1929 -0.4410 -0.8030 38 1 6.1461 -3.3202 -0.7358 39 1 2.3775 -0.1015 1.9963 40 1 1.3190 -1.4773 1.5770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046381848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:44 Heat of formation + Delta-G solvation = 102.835683 kcal Electronic energy + Delta-G solvation = -26034.010616 eV Core-core repulsion = 22272.188161 eV Total energy + Delta-G solvation = -3761.822455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.57197 -41.48958 -39.79196 -38.65660 -35.76506 -35.19466 -33.83492 -32.90480 -32.22417 -31.06750 -30.24558 -27.49523 -26.25926 -25.72343 -25.14629 -23.89524 -22.53548 -22.05082 -20.64410 -19.86430 -19.69616 -18.88693 -17.95994 -17.66831 -17.32351 -16.96947 -16.59720 -16.04084 -15.58705 -15.51840 -15.11550 -14.63180 -14.46895 -14.33321 -14.10074 -13.97946 -13.77038 -13.53357 -13.26530 -13.18121 -13.07746 -12.81389 -12.72864 -12.68855 -12.06689 -11.99239 -11.92964 -11.66300 -11.58280 -11.09375 -10.70399 -10.61804 -10.55360 -10.32201 -9.99824 -8.83385 -7.75212 -5.17583 -1.00442 -0.58392 0.83532 0.86319 1.47883 1.49579 1.56045 1.64649 1.96492 2.50063 2.51711 2.67473 3.01655 3.05965 3.34017 3.41002 3.54574 3.62998 3.77090 3.82963 4.08062 4.12585 4.23897 4.47336 4.63584 4.71446 4.75387 4.85621 4.92386 4.94010 4.98376 5.09768 5.17448 5.42569 5.47496 5.63138 5.64896 5.72380 5.86677 6.26393 6.36840 6.52655 6.56659 7.14974 7.19843 7.82402 8.44727 9.25457 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017108 B = 0.003272 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.259635 B = 8556.128500 C = 9204.307127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.172 3.828 3 N -0.693 5.693 4 C 0.572 3.428 5 O -0.558 6.558 6 C -0.201 4.201 7 C 0.226 3.774 8 N -0.490 5.490 9 C 0.289 3.711 10 N -0.464 5.464 11 H 0.469 0.531 12 N 0.014 4.986 13 N -0.211 5.211 14 C -0.088 4.088 15 C 0.082 3.918 16 C -0.127 4.127 17 C 0.152 3.848 18 N -0.623 5.623 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.058 4.058 22 N -0.941 5.941 23 Si 0.973 3.027 24 H -0.280 1.280 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.135 3.865 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.412 0.588 32 H 0.210 0.790 33 H 0.167 0.833 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.074 0.926 37 H -0.001 1.001 38 H 0.248 0.752 39 H 0.009 0.991 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 17.584 -4.980 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.086 3.914 3 N -0.345 5.345 4 C 0.358 3.642 5 O -0.438 6.438 6 C -0.210 4.210 7 C 0.053 3.947 8 N -0.204 5.204 9 C 0.043 3.957 10 N -0.192 5.192 11 H 0.321 0.679 12 N 0.030 4.970 13 N -0.092 5.092 14 C -0.214 4.214 15 C 0.051 3.949 16 C -0.166 4.166 17 C 0.027 3.973 18 N -0.350 5.350 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.251 4.251 22 N -0.591 5.591 23 Si 0.802 3.198 24 H -0.206 1.206 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.009 3.991 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.250 0.750 32 H 0.226 0.774 33 H 0.184 0.816 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.017 0.983 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.693 18.697 -3.995 20.257 hybrid contribution 1.200 -1.215 0.227 1.723 sum -5.494 17.482 -3.768 18.708 Atomic orbital electron populations 1.22002 0.91879 1.02923 1.03429 1.21185 0.94476 0.80241 0.95531 1.45750 1.49441 1.11168 1.28115 1.17853 0.80417 0.84341 0.81539 1.90761 1.37408 1.78255 1.37345 1.20665 1.05230 0.95253 0.99884 1.23563 0.86481 0.89999 0.94693 1.66825 1.26490 1.02479 1.24614 1.19754 0.94495 0.88130 0.93290 1.47512 1.40672 1.07805 1.23193 0.67870 1.81678 1.04349 1.16986 0.93937 1.74891 1.14592 0.97557 1.22208 1.20507 1.06597 0.96527 0.97733 1.21138 0.91266 0.87061 0.95385 1.23227 0.97361 0.99808 0.96189 1.21801 0.92496 0.98924 0.84039 1.44765 1.31178 1.50506 1.08505 1.19313 1.06851 1.17617 0.93241 0.91331 1.25470 0.99861 1.02188 0.97631 1.69993 1.30238 1.47088 1.11778 0.85236 0.78176 0.78864 0.77541 1.20573 1.21520 1.21056 1.21702 0.89043 0.92841 0.95509 0.90142 0.91438 0.91742 0.75021 0.77368 0.81554 0.89900 0.87494 0.90796 0.98273 0.94235 0.97252 0.95955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.38 71.98 0.60 -3.18 16 2 C 0.17 5.27 0.81 4.79 0.00 5.27 16 3 N -0.69 -17.46 5.09 -420.52 -2.14 -19.60 16 4 C 0.57 15.36 6.99 86.75 0.61 15.96 16 5 O -0.56 -18.79 13.39 -3.92 -0.05 -18.84 16 6 C -0.20 -4.34 5.88 -20.03 -0.12 -4.46 16 7 C 0.23 3.92 10.69 85.24 0.91 4.83 16 8 N -0.49 -9.40 10.37 -191.99 -1.99 -11.39 16 9 C 0.29 5.88 8.49 134.01 1.14 7.02 16 10 N -0.46 -7.52 7.52 -55.38 -0.42 -7.94 16 11 H 0.47 4.03 8.96 -213.25 -1.91 2.12 16 12 N 0.01 0.28 13.82 37.02 0.51 0.79 16 13 N -0.21 -5.10 12.40 -52.14 -0.65 -5.75 16 14 C -0.09 -2.02 7.27 39.63 0.29 -1.73 16 15 C 0.08 1.84 9.75 22.96 0.22 2.07 16 16 C -0.13 -3.88 6.07 31.98 0.19 -3.69 16 17 C 0.15 6.71 5.87 86.85 0.51 7.22 16 18 N -0.62 -31.22 3.39 -691.96 -2.35 -33.57 16 19 C -0.24 -13.53 10.27 84.04 0.86 -12.67 16 20 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 21 C -0.06 -3.25 5.49 84.86 0.47 -2.79 16 22 N -0.94 -53.66 10.09 21.65 0.22 -53.44 16 23 Si 0.97 45.33 29.55 68.60 2.03 47.35 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 27 C 0.14 5.71 6.20 86.73 0.54 6.24 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.74 8.12 -2.39 -0.02 1.72 16 30 H 0.06 1.91 6.03 -2.38 -0.01 1.89 16 31 H 0.41 7.77 6.52 -92.70 -0.60 7.17 16 32 H 0.21 2.22 6.39 -2.91 -0.02 2.20 16 33 H 0.17 3.64 7.71 -2.91 -0.02 3.62 16 34 H 0.08 2.51 8.05 -2.39 -0.02 2.49 16 35 H 0.11 2.39 8.07 -2.38 -0.02 2.37 16 36 H 0.07 3.81 5.87 -2.39 -0.01 3.80 16 37 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.01 0.44 6.90 -2.39 -0.02 0.42 16 40 H 0.02 0.98 7.81 -2.39 -0.02 0.96 16 Total: -1.00 -72.07 331.99 0.00 -72.07 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -1.39 Total: 10.21 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.23 Total: 20.10 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -6.81 Total: -130.89 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.05 Total: -18.84 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -72.07 0.00 -72.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046381848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.904 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds