Wall clock time and date at job start Tue Mar 31 2020 10:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 110.88509 * 2 1 4 4 C 1.34782 * 120.00129 * 62.43087 * 3 2 1 5 5 O 1.21542 * 119.99598 * 359.97438 * 4 3 2 6 6 C 1.47874 * 120.00162 * 179.97438 * 4 3 2 7 7 C 1.39457 * 121.11156 * 0.29071 * 6 4 3 8 8 C 1.38621 * 119.37231 * 180.28672 * 7 6 4 9 9 N 1.31589 * 121.63351 * 359.42424 * 8 7 6 10 10 C 1.32205 * 121.86740 * 0.28437 * 9 8 7 11 11 N 1.37213 * 134.67208 * 179.97438 * 10 9 8 12 12 H 0.96996 * 125.86959 * 359.97438 * 11 10 9 13 13 N 1.28783 * 108.26134 * 179.97438 * 11 10 9 14 14 N 1.28683 * 111.75808 * 359.97438 * 13 11 10 15 15 C 1.34396 * 109.15700 * 0.02562 * 14 13 11 16 16 C 1.55160 * 111.03809 * 236.09817 * 2 1 3 17 17 C 1.54316 * 102.94237 * 206.40823 * 16 2 1 18 18 N 1.47026 * 107.27271 * 22.19416 * 17 16 2 19 19 C 1.36934 * 125.64749 * 181.02683 * 18 17 16 20 20 H 1.08000 * 119.99998 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00510 * 0.03549 * 19 18 17 22 22 N 1.31622 * 119.99362 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00538 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46923 * 89.99903 * 23 21 19 25 25 H 1.48499 * 109.47446 * 210.00067 * 23 21 19 26 26 H 1.48498 * 109.47078 * 330.00244 * 23 21 19 27 27 C 1.47427 * 108.70022 * 1.05516 * 18 17 16 28 28 H 1.09002 * 109.47023 * 60.69856 * 1 2 3 29 29 H 1.08994 * 109.47013 * 180.70140 * 1 2 3 30 30 H 1.08997 * 109.46763 * 300.69884 * 1 2 3 31 31 H 0.97002 * 120.00235 * 242.42361 * 3 2 1 32 32 H 1.07993 * 120.31700 * 0.02562 * 7 6 4 33 33 H 1.08002 * 119.18574 * 179.71092 * 8 7 6 34 34 H 1.08999 * 110.71536 * 324.77554 * 16 2 1 35 35 H 1.09002 * 110.71802 * 88.04009 * 16 2 1 36 36 H 1.08997 * 109.88581 * 262.77301 * 17 16 2 37 37 H 1.09006 * 109.88139 * 141.60947 * 17 16 2 38 38 H 0.97007 * 119.99591 * 180.02562 * 22 21 19 39 39 H 1.08997 * 110.36465 * 217.03222 * 27 18 17 40 40 H 1.09000 * 110.45591 * 94.76234 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7879 2.1910 1.0347 5 8 1.1157 1.7970 1.9675 6 6 2.3155 3.5724 1.0350 7 6 3.0841 4.0504 -0.0260 8 6 3.5655 5.3497 0.0144 9 7 3.3062 6.1506 1.0258 10 6 2.5791 5.7586 2.0580 11 7 2.1562 6.3515 3.2209 12 1 2.3497 7.2606 3.4983 13 7 1.4582 5.4936 3.8807 14 7 1.3734 4.3694 3.2603 15 6 2.0523 4.4519 2.1033 16 6 2.0871 -0.8077 -1.2020 17 6 3.4684 -1.2731 -0.6953 18 7 3.4276 -1.2420 0.7741 19 6 4.4644 -1.5649 1.6083 20 1 4.3332 -1.5101 2.6789 21 6 5.6840 -1.9626 1.0780 22 7 5.8440 -2.0287 -0.2268 23 14 7.0981 -2.4038 2.2159 24 1 7.0447 -3.8537 2.5325 25 1 8.3870 -2.0900 1.5485 26 1 6.9867 -1.6186 3.4714 27 6 2.0853 -0.8062 1.2005 28 1 -0.3633 0.5030 -0.8962 29 1 -0.3633 -1.0275 0.0126 30 1 -0.3633 0.5246 0.8836 31 1 2.5886 1.6833 -0.7446 32 1 3.3057 3.4130 -0.8691 33 1 4.1643 5.7152 -0.8066 34 1 1.4481 -1.6633 -1.4208 35 1 2.1930 -0.1698 -2.0794 36 1 4.2433 -0.5984 -1.0590 37 1 3.6666 -2.2884 -1.0392 38 1 6.6962 -2.3070 -0.5975 39 1 2.1554 -0.1715 2.0839 40 1 1.4512 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046474587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:58 Heat of formation + Delta-G solvation = 132.251934 kcal Electronic energy + Delta-G solvation = -26641.242781 eV Core-core repulsion = 22880.695910 eV Total energy + Delta-G solvation = -3760.546871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.55976 -40.16325 -38.98056 -37.25539 -34.32451 -34.04507 -32.62546 -31.40871 -30.97075 -29.88568 -28.68478 -25.83646 -25.60507 -24.05937 -23.83679 -23.20189 -21.41572 -20.26396 -19.41040 -18.82103 -18.53250 -17.54822 -16.81386 -16.76508 -15.74132 -15.41425 -15.04578 -14.71864 -14.62250 -14.15984 -13.74686 -13.44846 -13.26147 -13.08796 -12.78832 -12.47347 -12.12511 -11.95528 -11.86599 -11.80215 -11.66539 -11.56642 -10.89092 -10.88205 -10.49088 -10.38317 -10.12310 -10.05420 -9.97372 -9.64931 -9.48933 -9.32409 -9.25025 -8.67356 -8.55074 -6.79165 -5.70301 -3.01501 -0.11050 0.66489 1.94326 2.05157 2.85212 3.13583 3.41318 3.46859 3.48878 3.58154 3.63744 4.04690 4.24747 4.37786 4.52049 4.56860 4.94988 5.04574 5.27077 5.31736 5.38004 5.46782 5.54729 5.61138 5.71373 5.94930 5.99442 6.10754 6.14588 6.33698 6.37948 6.38133 6.52326 6.66624 6.84392 7.09261 7.24834 7.54761 7.55580 7.75853 7.82182 8.00462 8.26870 8.44201 9.24942 9.84628 10.50326 11.41799 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.004324 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.539611 B = 6473.886121 C = 7258.688064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 N -0.691 5.691 4 C 0.552 3.448 5 O -0.498 6.498 6 C 0.001 3.999 7 C -0.142 4.142 8 C 0.163 3.837 9 N -0.464 5.464 10 C 0.213 3.787 11 N -0.408 5.408 12 H 0.456 0.544 13 N -0.003 5.003 14 N -0.204 5.204 15 C 0.003 3.997 16 C -0.146 4.146 17 C 0.177 3.823 18 N -0.603 5.603 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.925 5.925 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.130 3.870 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.397 0.603 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.251 0.749 39 H 0.057 0.943 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 16.237 -4.376 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.071 3.929 3 N -0.343 5.343 4 C 0.337 3.663 5 O -0.373 6.373 6 C -0.015 4.015 7 C -0.166 4.166 8 C -0.009 4.009 9 N -0.178 5.178 10 C -0.030 4.030 11 N -0.138 5.138 12 H 0.304 0.696 13 N 0.014 4.986 14 N -0.081 5.081 15 C -0.126 4.126 16 C -0.184 4.184 17 C 0.052 3.948 18 N -0.329 5.329 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.003 3.997 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.232 0.768 32 H 0.177 0.823 33 H 0.199 0.801 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.101 16.369 -2.336 18.413 hybrid contribution 1.698 -0.067 -0.565 1.791 sum -6.403 16.302 -2.901 17.753 Atomic orbital electron populations 1.21999 0.94147 1.02363 1.02368 1.21541 0.92649 0.80147 0.98581 1.45690 1.53862 1.12851 1.21888 1.17741 0.81411 0.83901 0.83295 1.90826 1.37310 1.75271 1.33853 1.19846 0.95992 0.94150 0.91547 1.22449 0.97449 0.97760 0.98954 1.22834 0.94824 0.89131 0.94080 1.66314 1.13670 1.37989 0.99818 1.19869 1.00605 0.91134 0.91429 1.44673 1.39692 1.15897 1.13580 0.69605 1.78255 1.07708 0.94630 1.17973 1.75582 1.17073 1.11503 1.03893 1.20121 1.02025 0.94074 0.96387 1.23238 1.00556 0.98921 0.95728 1.21161 0.89907 0.99974 0.83732 1.44447 1.07794 1.78871 1.01791 1.19073 0.89314 1.37384 0.89032 0.90605 1.24736 0.97682 1.02076 0.95997 1.69944 1.24099 1.54174 1.09124 0.86152 0.81960 0.78284 0.79631 1.21614 1.21742 1.20805 1.21907 0.87556 0.94992 0.95259 0.93044 0.91634 0.90928 0.76818 0.82326 0.80065 0.90702 0.91695 0.93620 0.93795 0.93913 0.92490 0.95498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.62 37.16 0.32 -1.90 16 2 C 0.16 2.68 0.82 -129.67 -0.11 2.57 16 3 N -0.69 -10.70 5.13 -46.54 -0.24 -10.93 16 4 C 0.55 9.39 7.18 -12.31 -0.09 9.30 16 5 O -0.50 -10.18 13.04 5.33 0.07 -10.11 16 6 C 0.00 0.02 5.92 -104.51 -0.62 -0.60 16 7 C -0.14 -1.42 9.61 -38.99 -0.37 -1.80 16 8 C 0.16 1.42 11.14 -17.51 -0.20 1.22 16 9 N -0.46 -5.11 10.35 -12.38 -0.13 -5.24 16 10 C 0.21 2.71 8.56 -156.21 -1.34 1.37 16 11 N -0.41 -4.36 7.06 31.11 0.22 -4.14 16 12 H 0.46 2.81 8.96 -190.25 -1.71 1.10 16 13 N 0.00 -0.04 13.29 60.35 0.80 0.76 16 14 N -0.20 -3.49 11.92 32.23 0.38 -3.10 16 15 C 0.00 0.05 6.97 -84.72 -0.59 -0.54 16 16 C -0.15 -2.44 5.99 -24.90 -0.15 -2.59 16 17 C 0.18 4.03 5.36 -3.07 -0.02 4.01 16 18 N -0.60 -15.23 3.39 -170.08 -0.58 -15.80 16 19 C -0.22 -6.19 10.28 -15.06 -0.15 -6.35 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.51 10.31 55.49 0.57 -25.94 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 27 C 0.13 2.82 6.11 -2.53 -0.02 2.81 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.07 1.20 6.45 -51.93 -0.33 0.86 16 31 H 0.40 5.01 6.64 -40.82 -0.27 4.74 16 32 H 0.16 1.12 6.53 -52.49 -0.34 0.78 16 33 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 35 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.05 1.12 7.38 -51.93 -0.38 0.74 16 37 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 39 H 0.06 1.36 6.31 -51.93 -0.33 1.04 16 40 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -35.91 331.79 -8.16 -44.07 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.82 Total: 0.95 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -3.42 Total: 7.15 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: 1.03 Total: -64.40 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.91 -8.16 -44.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046474587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.323 kcal (2) G-P(sol) polarization free energy of solvation -35.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds