Wall clock time and date at job start Tue Mar 31 2020 12:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.00005 * 2 1 4 4 C 1.54327 * 109.88385 * 238.90507 * 2 1 3 5 5 H 1.09011 * 110.71819 * 336.93243 * 4 2 1 6 6 N 1.46500 * 110.72332 * 100.02244 * 4 2 1 7 7 C 1.34773 * 120.00431 * 205.00616 * 6 4 2 8 8 O 1.21573 * 119.99906 * 359.97438 * 7 6 4 9 9 C 1.47718 * 120.00219 * 179.72299 * 7 6 4 10 10 C 1.40124 * 120.34846 * 0.02562 * 9 7 6 11 11 N 1.31262 * 121.14517 * 179.68329 * 10 9 7 12 12 C 1.32719 * 121.80073 * 0.60785 * 11 10 9 13 13 N 1.37122 * 133.40426 * 179.64904 * 12 11 10 14 14 H 0.97001 * 126.58935 * 0.02562 * 13 12 11 15 15 N 1.40194 * 106.81611 * 180.02562 * 13 12 11 16 16 N 1.28663 * 109.50970 * 0.02562 * 15 13 12 17 17 C 1.35326 * 110.00430 * 359.97438 * 16 15 13 18 18 C 1.39432 * 120.35604 * 180.26962 * 9 7 6 19 19 C 1.55151 * 102.94569 * 218.39155 * 4 2 1 20 20 C 1.54906 * 101.58275 * 35.49993 * 19 4 2 21 21 N 1.47019 * 109.88647 * 121.09770 * 2 1 3 22 22 C 1.36935 * 125.64823 * 298.32281 * 21 2 1 23 23 H 1.07998 * 119.99926 * 359.97438 * 22 21 2 24 24 C 1.38812 * 120.00120 * 179.97438 * 22 21 2 25 25 N 1.31611 * 120.00158 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99918 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46929 * 60.00335 * 26 24 22 28 28 H 1.48498 * 109.47155 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47470 * 300.00202 * 26 24 22 30 30 H 1.09002 * 109.46953 * 181.09975 * 1 2 3 31 31 H 1.09000 * 109.47031 * 301.09581 * 1 2 3 32 32 H 1.08997 * 109.47268 * 61.09574 * 1 2 3 33 33 H 0.97000 * 119.99456 * 25.00179 * 6 4 2 34 34 H 1.07990 * 119.42709 * 359.97438 * 10 9 7 35 35 H 1.08003 * 120.94809 * 359.97438 * 18 9 7 36 36 H 1.09000 * 111.00567 * 153.57678 * 19 4 2 37 37 H 1.09000 * 111.00141 * 277.42407 * 19 4 2 38 38 H 1.09004 * 110.36727 * 204.15814 * 20 19 4 39 39 H 1.08995 * 110.37119 * 81.83034 * 20 19 4 40 40 H 0.96998 * 120.00196 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3039 -1.4437 -1.6202 6 7 2.4554 0.1960 -2.2876 7 6 2.4580 -0.1883 -3.5794 8 8 2.1284 -1.3199 -3.8775 9 6 2.8561 0.7670 -4.6334 10 6 3.2328 2.0744 -4.2984 11 7 3.5951 2.9342 -5.2217 12 6 3.6107 2.6127 -6.5093 13 7 3.9323 3.3037 -7.6492 14 1 4.2285 4.2259 -7.7021 15 7 3.7509 2.4212 -8.7233 16 7 3.3502 1.2817 -8.2801 17 6 3.2408 1.3217 -6.9319 18 6 2.8561 0.3789 -5.9726 19 6 3.2876 -1.5143 -0.6925 20 6 2.8145 -1.8795 0.7367 21 7 2.0301 -0.7141 1.1838 22 6 1.8051 -0.3557 2.4862 23 1 1.2150 0.5205 2.7109 24 6 2.3355 -1.1185 3.5175 25 7 3.0542 -2.1865 3.2437 26 14 2.0291 -0.6291 5.2941 27 1 0.5685 -0.6288 5.5626 28 1 2.6977 -1.5999 6.1973 29 1 2.5769 0.7300 5.5348 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8996 33 1 2.7187 1.0988 -2.0496 34 1 3.2294 2.3786 -3.2623 35 1 2.5672 -0.6210 -6.2612 36 1 3.4851 -2.4110 -1.2798 37 1 4.1654 -0.8689 -0.6605 38 1 3.6717 -2.0338 1.3921 39 1 2.1886 -2.7715 0.7128 40 1 3.4251 -2.7193 3.9644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088625327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:32 Heat of formation + Delta-G solvation = 122.455148 kcal Electronic energy + Delta-G solvation = -25510.069461 eV Core-core repulsion = 21749.097770 eV Total energy + Delta-G solvation = -3760.971691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.81296 -40.24834 -38.70130 -37.54141 -34.44651 -34.25104 -32.30706 -32.09509 -31.00325 -30.39520 -28.64023 -25.75412 -25.06752 -24.10674 -23.91803 -23.12514 -21.17653 -20.33422 -19.91733 -19.14011 -18.64246 -17.27410 -16.87464 -16.73344 -16.55952 -15.78708 -14.90334 -14.76819 -14.44218 -14.15152 -13.91879 -13.65528 -13.52362 -13.37227 -12.99008 -12.84826 -12.41209 -12.18156 -12.11129 -11.90461 -11.61897 -11.19686 -10.90437 -10.88511 -10.65838 -10.59154 -10.32725 -10.15945 -9.83974 -9.80484 -9.79112 -9.61154 -9.51434 -8.79003 -8.68056 -6.92485 -5.69596 -3.12713 -0.25450 0.20212 1.53552 1.60807 2.53621 2.92499 3.34181 3.37304 3.41198 3.42991 3.43616 3.77749 3.81655 4.17269 4.25342 4.44532 4.61365 4.85302 5.18771 5.26403 5.36985 5.39617 5.47472 5.55741 5.65770 5.75630 6.05909 6.15350 6.18454 6.23545 6.27934 6.44917 6.52642 6.65047 6.80284 6.99055 7.02290 7.29419 7.44714 7.52190 7.57878 7.80849 8.13561 8.30855 9.16258 9.77205 10.40332 11.33689 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.032888 B = 0.002546 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.170888 B =10993.729298 C =11276.753548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.134 3.866 5 H 0.098 0.902 6 N -0.706 5.706 7 C 0.567 3.433 8 O -0.531 6.531 9 C -0.201 4.201 10 C 0.215 3.785 11 N -0.488 5.488 12 C 0.293 3.707 13 N -0.484 5.484 14 H 0.454 0.546 15 N 0.017 4.983 16 N -0.190 5.190 17 C -0.075 4.075 18 C 0.083 3.917 19 C -0.153 4.153 20 C 0.152 3.848 21 N -0.595 5.595 22 C -0.222 4.222 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.397 0.603 34 H 0.181 0.819 35 H 0.168 0.832 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.015 0.985 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 10.243 -17.917 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.116 0.884 6 N -0.357 5.357 7 C 0.352 3.648 8 O -0.408 6.408 9 C -0.210 4.210 10 C 0.042 3.958 11 N -0.202 5.202 12 C 0.048 3.952 13 N -0.209 5.209 14 H 0.302 0.698 15 N 0.034 4.966 16 N -0.072 5.072 17 C -0.200 4.200 18 C 0.052 3.948 19 C -0.193 4.193 20 C 0.027 3.973 21 N -0.320 5.320 22 C -0.350 4.350 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.744 3.256 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.232 0.768 34 H 0.198 0.802 35 H 0.185 0.815 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.571 9.977 -19.272 21.758 hybrid contribution -0.152 0.731 1.782 1.932 sum 1.419 10.708 -17.490 20.556 Atomic orbital electron populations 1.22249 0.97798 1.01542 0.99972 1.20998 0.92670 0.94788 0.86860 0.94588 1.22267 0.97934 0.90685 0.86121 0.88397 1.45974 1.67556 1.16376 1.05767 1.17634 0.78190 0.86742 0.82238 1.90818 1.48020 1.19769 1.82161 1.20874 1.08960 0.96594 0.94601 1.23148 0.86995 0.87304 0.98390 1.66707 1.19283 1.36733 0.97477 1.19607 0.96515 0.90286 0.88787 1.47544 1.55291 1.15436 1.02616 0.69758 1.81747 1.13410 0.93703 1.07699 1.74901 1.10311 1.13548 1.08424 1.20403 1.12093 0.95724 0.91764 1.21107 0.85927 0.98875 0.88856 1.23415 0.96635 0.99405 0.99850 1.21962 0.97431 0.88424 0.89461 1.44475 1.59258 1.28236 1.00033 1.18963 1.27385 1.08198 0.80480 0.90486 1.24783 1.00306 0.97330 0.98055 1.69771 1.39008 1.17745 1.30362 0.86167 0.77668 0.77430 0.84286 1.21218 1.21594 1.21170 0.92854 0.92672 0.94288 0.76762 0.80223 0.81481 0.91837 0.91839 0.87279 0.96670 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.13 37.16 0.34 -2.35 16 2 C 0.16 2.85 3.48 -66.95 -0.23 2.61 16 3 H 0.04 0.63 7.72 -51.93 -0.40 0.23 16 4 C 0.13 2.19 2.85 -66.10 -0.19 2.00 16 5 H 0.10 1.73 7.25 -51.92 -0.38 1.35 16 6 N -0.71 -8.73 5.13 -53.01 -0.27 -9.00 16 7 C 0.57 7.22 7.77 -12.39 -0.10 7.13 16 8 O -0.53 -8.68 16.04 5.30 0.09 -8.60 16 9 C -0.20 -2.01 5.88 -104.87 -0.62 -2.63 16 10 C 0.22 1.79 10.69 -17.09 -0.18 1.60 16 11 N -0.49 -4.58 10.37 -12.03 -0.12 -4.70 16 12 C 0.29 2.87 8.49 -155.92 -1.32 1.55 16 13 N -0.48 -3.83 7.53 31.15 0.23 -3.59 16 14 H 0.45 1.97 8.96 -182.53 -1.64 0.33 16 15 N 0.02 0.17 13.82 60.35 0.83 1.01 16 16 N -0.19 -2.16 12.40 32.16 0.40 -1.76 16 17 C -0.07 -0.80 7.27 -84.74 -0.62 -1.41 16 18 C 0.08 0.85 9.75 -38.52 -0.38 0.47 16 19 C -0.15 -2.79 6.77 -24.59 -0.17 -2.96 16 20 C 0.15 3.51 5.89 -2.53 -0.01 3.49 16 21 N -0.59 -13.99 3.13 -162.57 -0.51 -14.50 16 22 C -0.22 -5.79 9.89 -15.06 -0.15 -5.94 16 23 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 25 N -0.92 -25.85 10.09 55.49 0.56 -25.29 16 26 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.40 3.73 6.40 -40.82 -0.26 3.47 16 34 H 0.18 0.96 6.39 -52.49 -0.34 0.62 16 35 H 0.17 1.61 7.71 -52.48 -0.40 1.21 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.11 2.85 5.88 -51.93 -0.31 2.54 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 337.93 15.07 5.09 5.09 Total: -1.00 -31.88 337.93 -8.24 -40.12 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.80 Total: 1.73 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.72 Total: 3.24 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 1.12 Total: -57.83 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.88 -8.24 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088625327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.577 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds