Wall clock time and date at job start Tue Mar 31 2020 11:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 H 1.08995 * 109.47063 * 55.00142 * 3 2 1 5 5 F 1.39896 * 109.47269 * 294.99815 * 3 2 1 6 6 C 1.53002 * 109.46964 * 174.99878 * 3 2 1 7 7 N 1.46899 * 109.47120 * 179.97438 * 6 3 2 8 8 C 1.48556 * 111.00355 * 190.00357 * 7 6 3 9 9 C 1.54374 * 104.59607 * 200.96281 * 8 7 6 10 10 H 1.09003 * 117.60310 * 242.74409 * 9 8 7 11 11 C 1.54122 * 105.06684 * 23.81385 * 9 8 7 12 12 H 1.08999 * 121.75953 * 222.15018 * 11 9 8 13 13 C 1.48559 * 110.99958 * 74.58259 * 7 6 3 14 14 C 1.53003 * 118.13162 * 87.22929 * 9 8 7 15 15 H 1.09005 * 117.44328 * 15.92930 * 14 9 8 16 16 N 1.46504 * 117.44507 * 160.68435 * 14 9 8 17 17 C 1.34771 * 119.99670 * 205.15692 * 16 14 9 18 18 O 1.21284 * 120.00353 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99952 * 179.97438 * 17 16 14 20 20 S 1.80990 * 109.47384 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00278 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99888 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00452 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00292 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99660 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 269.99524 * 25 23 21 27 27 H 1.48503 * 109.47261 * 149.99704 * 25 23 21 28 28 H 1.48500 * 109.47454 * 29.99697 * 25 23 21 29 29 H 1.08996 * 109.47378 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47090 * 300.00038 * 1 2 3 31 31 H 1.08997 * 109.47257 * 60.00026 * 1 2 3 32 32 H 1.08997 * 109.47090 * 239.99962 * 2 1 3 33 33 H 1.09003 * 109.47148 * 120.00418 * 2 1 3 34 34 H 1.09004 * 109.47241 * 60.00403 * 6 3 2 35 35 H 1.09001 * 109.47306 * 300.00265 * 6 3 2 36 36 H 1.09000 * 110.41515 * 82.17520 * 8 7 6 37 37 H 1.09010 * 110.51048 * 319.79210 * 8 7 6 38 38 H 1.08999 * 110.41017 * 277.82162 * 13 7 6 39 39 H 1.09002 * 110.41112 * 40.14134 * 13 7 6 40 40 H 0.96994 * 119.99668 * 25.16072 * 16 14 9 41 41 H 1.09001 * 109.47050 * 59.99941 * 19 17 16 42 42 H 1.08999 * 109.47014 * 300.00996 * 19 17 16 43 43 H 0.96997 * 119.99773 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6700 2.0679 -1.1954 6 6 3.5649 1.4442 0.1258 7 7 4.0546 2.8292 0.1251 8 6 5.5347 2.8705 0.0042 9 6 5.9308 4.2599 0.5479 10 1 6.4126 4.9535 -0.1413 11 6 4.7744 4.6696 1.4809 12 1 4.3747 5.6837 1.4879 13 6 3.7759 3.4930 1.4246 14 6 6.1688 4.4049 2.0524 15 1 6.3101 3.4907 2.6290 16 7 6.9441 5.5626 2.5049 17 6 7.6136 5.5102 3.6734 18 8 7.5747 4.5044 4.3501 19 6 8.4116 6.7009 4.1387 20 16 9.1889 6.3223 5.7288 21 6 10.0308 7.8411 6.0272 22 1 9.9601 8.6473 5.3120 23 6 10.7848 8.0015 7.1814 24 7 11.4134 9.1364 7.4046 25 14 10.9077 6.6069 8.4181 26 1 9.8129 6.7304 9.4139 27 1 12.2185 6.6752 9.1126 28 1 10.7892 5.3064 7.7110 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9995 0.9052 -0.7161 35 1 3.8532 0.9569 1.0571 36 1 5.8338 2.7711 -1.0392 37 1 5.9892 2.0831 0.6057 38 1 2.7508 3.8624 1.4506 39 1 3.9514 2.8025 2.2496 40 1 6.9755 6.3668 1.9636 41 1 7.7500 7.5597 4.2526 42 1 9.1826 6.9313 3.4034 43 1 11.9406 9.2483 8.2110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113897457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:43 Heat of formation + Delta-G solvation = -81.584992 kcal Electronic energy + Delta-G solvation = -23208.850459 eV Core-core repulsion = 19522.262162 eV Total energy + Delta-G solvation = -3686.588297 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.46504 -41.44082 -40.14847 -36.82245 -35.14495 -34.67614 -33.65750 -30.92235 -29.63221 -29.24968 -27.86217 -25.53581 -23.08573 -22.24431 -21.99978 -21.74696 -21.10799 -19.87591 -18.11349 -17.93786 -17.55837 -17.11425 -16.86429 -16.53036 -16.48589 -15.97043 -15.51865 -15.34487 -15.01431 -14.88180 -14.69597 -14.47484 -14.02251 -13.92347 -13.71318 -13.45507 -13.36514 -13.33597 -13.03679 -13.01731 -12.67327 -12.58148 -12.50373 -12.00064 -11.92355 -11.87618 -11.55884 -11.45964 -11.17505 -11.14664 -11.04074 -10.55220 -9.85927 -9.53113 -9.00511 -8.51911 -6.23081 0.95768 1.31281 1.42034 1.44918 1.52892 2.02475 2.24596 2.62254 2.67804 2.81824 2.86380 3.46037 3.52151 3.68899 3.74994 3.76752 3.78012 3.97404 4.05201 4.09164 4.21642 4.23014 4.29209 4.42152 4.44903 4.46103 4.56912 4.68704 4.74734 4.77852 4.84798 4.86207 5.03985 5.06022 5.09676 5.25400 5.34637 5.40949 5.67692 5.70256 5.90991 6.11202 6.37318 6.93157 7.10607 8.60384 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.001988 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.175238 B =14081.105716 C =14491.962473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 C 0.097 3.903 4 H 0.083 0.917 5 F -0.222 7.222 6 C 0.015 3.985 7 N -0.516 5.516 8 C 0.064 3.936 9 C -0.155 4.155 10 H 0.136 0.864 11 C -0.165 4.165 12 H 0.129 0.871 13 C 0.060 3.940 14 C 0.099 3.901 15 H 0.113 0.887 16 N -0.683 5.683 17 C 0.542 3.458 18 O -0.559 6.559 19 C -0.111 4.111 20 S -0.174 6.174 21 C -0.530 4.530 22 H 0.063 0.937 23 C 0.046 3.954 24 N -0.916 5.916 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.236 1.236 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.420 0.580 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.948 -16.789 -18.581 32.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.061 3.939 4 H 0.101 0.899 5 F -0.203 7.203 6 C -0.114 4.114 7 N -0.240 5.240 8 C -0.064 4.064 9 C -0.175 4.175 10 H 0.154 0.846 11 C -0.185 4.185 12 H 0.147 0.853 13 C -0.068 4.068 14 C -0.008 4.008 15 H 0.131 0.869 16 N -0.334 5.334 17 C 0.328 3.672 18 O -0.437 6.437 19 C -0.262 4.262 20 S 0.053 5.947 21 C -0.678 4.678 22 H 0.081 0.919 23 C -0.160 4.160 24 N -0.554 5.554 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.184 1.184 28 H -0.160 1.160 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.257 0.743 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.167 -18.055 -17.846 32.421 hybrid contribution 0.838 1.330 0.268 1.595 sum -19.329 -16.725 -17.578 31.021 Atomic orbital electron populations 1.21762 0.94704 1.02747 1.02035 1.22119 0.97416 0.94520 1.04580 1.21703 0.94265 0.94085 0.83863 0.89874 1.92785 1.92868 1.84748 1.49946 1.22962 0.95121 0.89936 1.03371 1.65565 1.11533 1.15659 1.31265 1.22643 0.87272 0.94278 1.02200 1.23898 1.02345 0.99689 0.91583 0.84598 1.23969 0.89234 1.00987 1.04314 0.85312 1.22712 0.99429 0.94301 0.90308 1.21655 0.93393 0.90759 0.94999 0.86922 1.44995 1.49441 1.17563 1.21404 1.19959 0.78487 0.87963 0.80754 1.90687 1.63269 1.33915 1.55821 1.23258 1.02591 0.99983 1.00361 1.84708 1.62610 1.22392 1.24997 1.22463 1.35160 0.99700 1.10441 0.91883 1.25565 0.93459 0.98030 0.98935 1.70016 1.31450 1.25921 1.28021 0.85869 0.79135 0.81185 0.80192 1.18684 1.18360 1.16033 0.91170 0.92217 0.93216 0.90528 0.88681 0.88990 0.91392 0.88164 0.93076 0.88813 0.93080 0.74285 0.86598 0.86536 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.83 71.98 0.71 -0.70 16 2 C -0.15 -1.29 5.70 30.59 0.17 -1.12 16 3 C 0.10 1.21 3.38 30.59 0.10 1.31 16 4 H 0.08 0.96 7.47 -2.39 -0.02 0.94 16 5 F -0.22 -4.24 16.68 44.97 0.75 -3.49 16 6 C 0.01 0.18 4.59 86.30 0.40 0.57 16 7 N -0.52 -7.87 5.26 -881.41 -4.64 -12.50 16 8 C 0.06 0.91 6.26 86.45 0.54 1.45 16 9 C -0.16 -2.39 7.04 -9.95 -0.07 -2.46 16 10 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 11 C -0.16 -2.71 7.04 -9.93 -0.07 -2.78 16 12 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 13 C 0.06 0.92 5.72 86.47 0.49 1.41 16 14 C 0.10 2.05 5.98 44.99 0.27 2.32 16 15 H 0.11 2.86 7.40 -2.38 -0.02 2.84 16 16 N -0.68 -15.56 5.56 -442.51 -2.46 -18.02 16 17 C 0.54 18.00 7.85 87.66 0.69 18.68 16 18 O -0.56 -23.27 15.43 -3.04 -0.05 -23.31 16 19 C -0.11 -4.04 6.16 71.24 0.44 -3.60 16 20 S -0.17 -8.63 18.55 -56.49 -1.05 -9.67 16 21 C -0.53 -30.54 10.04 67.95 0.68 -29.85 16 22 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 23 C 0.05 2.66 5.50 84.86 0.47 3.12 16 24 N -0.92 -55.42 13.97 21.65 0.30 -55.12 16 25 Si 0.91 44.59 27.74 68.60 1.90 46.49 16 26 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 27 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.24 -11.49 6.74 99.48 0.67 -10.82 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.56 7.94 -2.39 -0.02 0.55 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 1.03 8.08 -2.38 -0.02 1.01 16 35 H 0.07 0.68 7.77 -2.39 -0.02 0.66 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 0.74 8.00 -2.38 -0.02 0.72 16 38 H 0.09 1.33 7.85 -2.39 -0.02 1.31 16 39 H 0.05 0.79 7.75 -2.39 -0.02 0.77 16 40 H 0.42 6.82 8.83 -92.71 -0.82 6.00 16 41 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 42 H 0.12 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -72.73 369.93 -0.27 -73.00 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.15 Total: 14.28 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.82 Total: -11.65 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -6.80 Total: -85.64 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.75 Total: -3.49 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.05 Total: -9.67 kcal Total: -72.73 -0.27 -73.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113897457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.590 kcal (2) G-P(sol) polarization free energy of solvation -72.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds