Wall clock time and date at job start Tue Mar 31 2020 11:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46861 * 2 1 4 4 H 1.09001 * 109.47468 * 55.00186 * 3 2 1 5 5 C 1.50707 * 109.46977 * 174.99976 * 3 2 1 6 6 H 1.07995 * 119.99985 * 120.00729 * 5 3 2 7 7 C 1.37878 * 120.00073 * 299.99852 * 5 3 2 8 8 N 1.31508 * 119.99918 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99935 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47347 * 89.99588 * 9 7 5 11 11 H 1.48501 * 109.47415 * 209.99585 * 9 7 5 12 12 H 1.48501 * 109.47105 * 329.99677 * 9 7 5 13 13 N 1.46499 * 109.47477 * 294.99937 * 3 2 1 14 14 C 1.34781 * 119.99773 * 85.00161 * 13 3 2 15 15 O 1.21543 * 119.99861 * 359.97438 * 14 13 3 16 16 C 1.47908 * 119.99630 * 180.02562 * 14 13 3 17 17 C 1.38906 * 121.11016 * 354.14142 * 16 14 13 18 18 C 1.39239 * 119.58985 * 180.02562 * 17 16 14 19 19 C 1.50699 * 119.06205 * 180.02562 * 18 17 16 20 20 N 1.31017 * 121.87921 * 0.02562 * 18 17 16 21 21 C 1.33547 * 121.82425 * 359.97438 * 20 18 17 22 22 C 1.40649 * 120.94715 * 179.97438 * 21 20 18 23 23 C 1.36285 * 119.73172 * 180.02562 * 22 21 20 24 24 F 1.35102 * 119.49791 * 179.97438 * 23 22 21 25 25 C 1.39595 * 120.99648 * 0.02562 * 23 22 21 26 26 C 1.36187 * 120.81032 * 0.02562 * 25 23 22 27 27 C 1.40144 * 119.67818 * 359.97438 * 26 25 23 28 28 H 1.08999 * 109.46878 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47494 * 300.00086 * 1 2 3 30 30 H 1.09006 * 109.47202 * 60.00221 * 1 2 3 31 31 H 1.09005 * 109.47348 * 240.00535 * 2 1 3 32 32 H 1.08993 * 109.47453 * 119.99888 * 2 1 3 33 33 H 0.97006 * 119.99702 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00130 * 264.99638 * 13 3 2 35 35 H 1.08005 * 120.20708 * 359.97438 * 17 16 14 36 36 H 1.09001 * 109.47272 * 269.97946 * 19 18 17 37 37 H 1.09004 * 109.47080 * 29.97787 * 19 18 17 38 38 H 1.08999 * 109.47342 * 149.97693 * 19 18 17 39 39 H 1.08004 * 120.13314 * 0.29704 * 22 21 20 40 40 H 1.07994 * 119.59153 * 180.02562 * 25 23 22 41 41 H 1.08000 * 120.16346 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8806 1.3363 9 14 3.0964 0.1089 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2348 3.8752 12 1 1.7877 0.8074 2.6387 13 7 1.6524 2.0976 -1.2518 14 6 0.4350 2.6645 -1.3669 15 8 -0.3414 2.6318 -0.4323 16 6 0.0436 3.3253 -2.6309 17 6 0.9517 3.4815 -3.6703 18 6 0.5494 4.1090 -4.8464 19 6 1.5442 4.2717 -5.9666 20 7 -0.6694 4.5621 -5.0069 21 6 -1.5951 4.4470 -4.0512 22 6 -2.8980 4.9406 -4.2431 23 6 -3.8231 4.8103 -3.2508 24 9 -5.0731 5.2866 -3.4399 25 6 -3.4982 4.1932 -2.0415 26 6 -2.2459 3.7050 -1.8219 27 6 -1.2703 3.8223 -2.8211 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 5.8770 0.4821 2.1130 34 1 2.2719 2.1233 -1.9977 35 1 1.9639 3.1193 -3.5665 36 1 2.0705 5.2191 -5.8505 37 1 2.2617 3.4516 -5.9373 38 1 1.0201 4.2619 -6.9223 39 1 -3.1656 5.4170 -5.1747 40 1 -4.2491 4.1018 -1.2708 41 1 -2.0061 3.2291 -0.8826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116616344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:05 Heat of formation + Delta-G solvation = -23.506041 kcal Electronic energy + Delta-G solvation = -26032.342347 eV Core-core repulsion = 22212.828591 eV Total energy + Delta-G solvation = -3819.513756 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.12299 -41.21256 -39.21536 -37.32750 -35.61532 -33.63012 -32.52458 -32.09741 -31.63067 -29.95528 -28.03002 -27.54944 -24.64988 -23.38441 -22.97824 -22.56917 -20.77295 -19.99776 -18.70398 -17.88033 -17.49283 -16.69959 -16.12254 -15.89304 -15.86632 -15.52457 -15.13922 -14.90865 -14.61854 -14.41181 -13.94678 -13.75380 -13.45439 -13.16151 -13.08774 -12.98511 -12.54357 -12.50569 -12.09955 -11.92620 -11.91292 -11.60959 -11.30385 -11.20639 -11.03969 -10.75166 -10.49252 -10.18333 -10.03341 -9.60662 -9.36693 -9.13360 -8.87704 -8.75945 -8.49127 -8.25681 -6.30830 -4.34767 -0.05105 0.53511 1.53248 2.55080 3.15874 3.24379 3.28935 3.31696 3.48663 3.71863 3.93842 4.22220 4.22352 4.43990 4.53799 4.65052 4.71861 4.88383 5.01574 5.02563 5.26222 5.30385 5.40481 5.52754 5.57453 5.73328 5.79519 5.83663 5.87499 5.91092 6.02587 6.10474 6.17814 6.37678 6.53239 6.58033 6.63982 6.71465 6.81077 7.06683 7.14497 7.35179 7.69112 7.93844 8.31946 8.55667 8.69367 9.28546 10.80940 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.003824 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.390108 B = 7321.204233 C = 8586.585427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.242 3.758 4 H 0.054 0.946 5 C -0.540 4.540 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.683 5.683 14 C 0.547 3.453 15 O -0.534 6.534 16 C -0.048 4.048 17 C -0.143 4.143 18 C 0.166 3.834 19 C -0.108 4.108 20 N -0.470 5.470 21 C 0.156 3.844 22 C -0.146 4.146 23 C 0.125 3.875 24 F -0.137 7.137 25 C -0.162 4.162 26 C -0.057 4.057 27 C -0.087 4.087 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.269 0.731 34 H 0.396 0.604 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.086 5.192 -11.661 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.071 0.929 5 C -0.578 4.578 6 H 0.099 0.901 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.330 5.330 14 C 0.332 3.668 15 O -0.414 6.414 16 C -0.059 4.059 17 C -0.164 4.164 18 C 0.014 3.986 19 C -0.165 4.165 20 N -0.181 5.181 21 C 0.034 3.966 22 C -0.166 4.166 23 C 0.104 3.896 24 F -0.116 7.116 25 C -0.181 4.181 26 C -0.075 4.075 27 C -0.090 4.090 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.231 0.769 35 H 0.166 0.834 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.799 5.532 -11.605 18.141 hybrid contribution -0.056 -0.763 1.057 1.305 sum -12.855 4.769 -10.548 17.299 Atomic orbital electron populations 1.21895 0.96901 0.99334 1.02170 1.22299 0.94398 0.99694 1.01413 1.19275 0.95984 0.88627 0.82222 0.92857 1.20994 0.88321 1.40343 1.08109 0.90086 1.24816 0.94880 0.95019 0.97623 1.69856 1.08696 1.44096 1.29842 0.86913 0.80949 0.79996 0.80963 1.20148 1.22046 1.18418 1.46167 1.14067 1.54395 1.18369 1.17950 0.83126 0.79417 0.86310 1.90546 1.50737 1.60293 1.39861 1.20643 0.93327 0.96915 0.95003 1.22355 1.00927 0.99861 0.93229 1.21450 0.91552 0.91373 0.94207 1.20833 0.96458 1.03496 0.95746 1.67605 1.01419 1.18144 1.30891 1.18370 0.93121 0.95942 0.89190 1.20531 0.91249 1.04523 1.00271 1.17429 0.79760 0.97351 0.95048 1.91514 1.38503 1.85985 1.95585 1.21081 0.98787 1.01654 0.96578 1.22104 0.90464 0.94392 1.00537 1.18725 0.94041 1.00647 0.95592 0.94741 0.92680 0.93093 0.92130 0.92485 0.92138 0.76869 0.83439 0.89727 0.89940 0.90100 0.83581 0.84168 0.80073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.51 37.16 0.32 -2.39 16 2 C -0.14 -2.88 5.11 -26.73 -0.14 -3.02 16 3 C 0.24 5.30 1.83 -69.08 -0.13 5.17 16 4 H 0.05 1.29 6.64 -51.93 -0.34 0.95 16 5 C -0.54 -13.70 9.31 -34.44 -0.32 -14.02 16 6 H 0.08 2.16 7.98 -52.49 -0.42 1.74 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.28 13.96 55.43 0.77 -24.51 16 9 Si 0.88 20.71 24.41 -169.99 -4.15 16.56 16 10 H -0.27 -6.26 6.83 56.52 0.39 -5.88 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -5.99 6.53 56.52 0.37 -5.62 16 13 N -0.68 -12.32 4.98 -55.85 -0.28 -12.60 16 14 C 0.55 9.48 6.32 -12.30 -0.08 9.40 16 15 O -0.53 -10.27 10.65 5.33 0.06 -10.21 16 16 C -0.05 -0.71 5.94 -104.35 -0.62 -1.33 16 17 C -0.14 -1.76 9.20 -38.96 -0.36 -2.11 16 18 C 0.17 1.95 6.78 -82.57 -0.56 1.39 16 19 C -0.11 -0.86 10.14 36.01 0.37 -0.50 16 20 N -0.47 -6.33 10.19 -7.26 -0.07 -6.40 16 21 C 0.16 2.19 6.61 -84.88 -0.56 1.62 16 22 C -0.15 -1.82 9.94 -39.38 -0.39 -2.21 16 23 C 0.13 1.53 7.23 -39.78 -0.29 1.24 16 24 F -0.14 -1.63 17.24 2.25 0.04 -1.59 16 25 C -0.16 -1.97 9.94 -39.81 -0.40 -2.36 16 26 C -0.06 -0.80 9.24 -39.60 -0.37 -1.17 16 27 C -0.09 -1.29 5.77 -106.50 -0.61 -1.90 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.07 7.84 -51.93 -0.41 0.66 16 30 H 0.05 0.92 5.64 -51.93 -0.29 0.63 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.25 3.21 -51.93 -0.17 1.08 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.40 6.21 6.71 -40.82 -0.27 5.94 16 35 H 0.15 1.48 6.55 -52.48 -0.34 1.14 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.18 2.77 4.98 -52.49 -0.26 2.51 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -29.38 333.83 -7.48 -36.86 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.65 Total: 6.98 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -4.23 Total: -10.13 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.42 Total: -43.50 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.06 Total: -10.21 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.15 Total: 16.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.38 -7.48 -36.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116616344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.357 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds