Wall clock time and date at job start Tue Mar 31 2020 11:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46861 * 2 1 4 4 H 1.09001 * 109.47468 * 55.00186 * 3 2 1 5 5 C 1.50707 * 109.46977 * 174.99976 * 3 2 1 6 6 H 1.07995 * 119.99985 * 120.00729 * 5 3 2 7 7 C 1.37878 * 120.00073 * 299.99852 * 5 3 2 8 8 N 1.31508 * 119.99918 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99935 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47347 * 89.99588 * 9 7 5 11 11 H 1.48501 * 109.47415 * 209.99585 * 9 7 5 12 12 H 1.48501 * 109.47105 * 329.99677 * 9 7 5 13 13 N 1.46499 * 109.47477 * 294.99937 * 3 2 1 14 14 C 1.34781 * 119.99773 * 85.00161 * 13 3 2 15 15 O 1.21543 * 119.99861 * 359.97438 * 14 13 3 16 16 C 1.47908 * 119.99630 * 180.02562 * 14 13 3 17 17 C 1.38906 * 121.11016 * 354.14142 * 16 14 13 18 18 C 1.39239 * 119.58985 * 180.02562 * 17 16 14 19 19 C 1.50699 * 119.06205 * 180.02562 * 18 17 16 20 20 N 1.31017 * 121.87921 * 0.02562 * 18 17 16 21 21 C 1.33547 * 121.82425 * 359.97438 * 20 18 17 22 22 C 1.40649 * 120.94715 * 179.97438 * 21 20 18 23 23 C 1.36285 * 119.73172 * 180.02562 * 22 21 20 24 24 F 1.35102 * 119.49791 * 179.97438 * 23 22 21 25 25 C 1.39595 * 120.99648 * 0.02562 * 23 22 21 26 26 C 1.36187 * 120.81032 * 0.02562 * 25 23 22 27 27 C 1.40144 * 119.67818 * 359.97438 * 26 25 23 28 28 H 1.08999 * 109.46878 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47494 * 300.00086 * 1 2 3 30 30 H 1.09006 * 109.47202 * 60.00221 * 1 2 3 31 31 H 1.09005 * 109.47348 * 240.00535 * 2 1 3 32 32 H 1.08993 * 109.47453 * 119.99888 * 2 1 3 33 33 H 0.97006 * 119.99702 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00130 * 264.99638 * 13 3 2 35 35 H 1.08005 * 120.20708 * 359.97438 * 17 16 14 36 36 H 1.09001 * 109.47272 * 269.97946 * 19 18 17 37 37 H 1.09004 * 109.47080 * 29.97787 * 19 18 17 38 38 H 1.08999 * 109.47342 * 149.97693 * 19 18 17 39 39 H 1.08004 * 120.13314 * 0.29704 * 22 21 20 40 40 H 1.07994 * 119.59153 * 180.02562 * 25 23 22 41 41 H 1.08000 * 120.16346 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8806 1.3363 9 14 3.0964 0.1089 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2348 3.8752 12 1 1.7877 0.8074 2.6387 13 7 1.6524 2.0976 -1.2518 14 6 0.4350 2.6645 -1.3669 15 8 -0.3414 2.6318 -0.4323 16 6 0.0436 3.3253 -2.6309 17 6 0.9517 3.4815 -3.6703 18 6 0.5494 4.1090 -4.8464 19 6 1.5442 4.2717 -5.9666 20 7 -0.6694 4.5621 -5.0069 21 6 -1.5951 4.4470 -4.0512 22 6 -2.8980 4.9406 -4.2431 23 6 -3.8231 4.8103 -3.2508 24 9 -5.0731 5.2866 -3.4399 25 6 -3.4982 4.1932 -2.0415 26 6 -2.2459 3.7050 -1.8219 27 6 -1.2703 3.8223 -2.8211 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 5.8770 0.4821 2.1130 34 1 2.2719 2.1233 -1.9977 35 1 1.9639 3.1193 -3.5665 36 1 2.0705 5.2191 -5.8505 37 1 2.2617 3.4516 -5.9373 38 1 1.0201 4.2619 -6.9223 39 1 -3.1656 5.4170 -5.1747 40 1 -4.2491 4.1018 -1.2708 41 1 -2.0061 3.2291 -0.8826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116616344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:04 Heat of formation + Delta-G solvation = -41.338986 kcal Electronic energy + Delta-G solvation = -26033.115641 eV Core-core repulsion = 22212.828591 eV Total energy + Delta-G solvation = -3820.287051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.07115 -42.28776 -40.57872 -38.30313 -37.22859 -34.82271 -34.34995 -33.21150 -32.91344 -31.02604 -29.47979 -28.70545 -25.86164 -24.73263 -24.07206 -23.90606 -22.21576 -21.48223 -19.75681 -19.29175 -18.54037 -18.21200 -17.50737 -17.12551 -16.89646 -16.80530 -16.44428 -16.16844 -15.83049 -15.58157 -15.20473 -15.01527 -14.78584 -14.54861 -14.12240 -14.07908 -13.84642 -13.70939 -13.61777 -13.20812 -12.98306 -12.86214 -12.77878 -12.55551 -12.41895 -12.20298 -11.86364 -11.59640 -11.43393 -11.26550 -11.22461 -10.86183 -10.37649 -9.92310 -9.72162 -9.42888 -8.37377 -6.43356 -1.09301 -0.45179 0.46582 1.28814 1.37569 1.45814 1.56404 1.98390 2.12800 2.26756 2.78211 2.88433 2.99037 3.29316 3.40964 3.52716 3.54329 3.73148 3.95473 4.05264 4.23176 4.29942 4.32182 4.34696 4.46506 4.57987 4.64398 4.82098 4.84224 4.88228 4.95596 4.97298 5.04390 5.10261 5.13526 5.19622 5.23740 5.38625 5.44753 5.52092 5.58136 5.69941 6.11149 6.57444 6.70219 6.72318 7.14332 7.29817 8.77384 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.003824 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.390108 B = 7321.204233 C = 8586.585427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.250 3.750 4 H 0.030 0.970 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.933 3.067 10 H -0.261 1.261 11 H -0.296 1.296 12 H -0.257 1.257 13 N -0.684 5.684 14 C 0.550 3.450 15 O -0.555 6.555 16 C -0.070 4.070 17 C -0.128 4.128 18 C 0.164 3.836 19 C -0.106 4.106 20 N -0.478 5.478 21 C 0.141 3.859 22 C -0.142 4.142 23 C 0.124 3.876 24 F -0.134 7.134 25 C -0.150 4.150 26 C -0.076 4.076 27 C -0.099 4.099 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.270 0.730 34 H 0.408 0.592 35 H 0.169 0.831 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.297 5.154 -13.132 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C 0.146 3.854 4 H 0.048 0.952 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.760 3.240 10 H -0.186 1.186 11 H -0.224 1.224 12 H -0.181 1.181 13 N -0.332 5.332 14 C 0.337 3.663 15 O -0.436 6.436 16 C -0.081 4.081 17 C -0.148 4.148 18 C 0.012 3.988 19 C -0.163 4.163 20 N -0.188 5.188 21 C 0.019 3.981 22 C -0.162 4.162 23 C 0.103 3.897 24 F -0.112 7.112 25 C -0.169 4.169 26 C -0.094 4.094 27 C -0.102 4.102 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.187 0.813 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.180 0.820 40 H 0.179 0.821 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.034 5.501 -13.106 19.975 hybrid contribution 0.316 -0.651 1.398 1.574 sum -13.718 4.849 -11.708 18.676 Atomic orbital electron populations 1.21786 0.95166 1.00710 1.01689 1.22222 0.95886 0.98303 1.01276 1.18892 0.93500 0.89732 0.83289 0.95185 1.21251 0.90132 1.38745 1.07108 0.92150 1.25502 0.95656 0.95842 0.99773 1.69965 1.10276 1.45973 1.30831 0.86091 0.79505 0.80005 0.78378 1.18640 1.22381 1.18089 1.45925 1.14916 1.54867 1.17532 1.18248 0.82310 0.78700 0.87016 1.90547 1.51246 1.60861 1.40968 1.20407 0.94300 0.98805 0.94590 1.22666 1.01321 0.98317 0.92536 1.22056 0.91659 0.90213 0.94893 1.20972 0.95938 1.04999 0.94400 1.67686 1.02011 1.18388 1.30730 1.18552 0.93933 0.96491 0.89131 1.20717 0.90715 1.03847 1.00901 1.17405 0.79878 0.97421 0.95006 1.91526 1.38233 1.85924 1.95554 1.21257 0.98465 1.00115 0.97018 1.21950 0.91374 0.95924 1.00165 1.18854 0.94151 1.01047 0.96172 0.92372 0.93878 0.92894 0.91190 0.93613 0.92092 0.75569 0.81320 0.88400 0.87894 0.89483 0.82008 0.82078 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.51 71.98 0.61 -4.24 16 2 C -0.14 -5.55 5.11 30.59 0.16 -5.39 16 3 C 0.25 10.91 1.83 44.25 0.08 11.00 16 4 H 0.03 1.47 6.64 -2.39 -0.02 1.45 16 5 C -0.53 -27.36 9.31 25.60 0.24 -27.12 16 6 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.75 5.45 84.66 0.46 2.21 16 8 N -0.93 -53.89 13.96 21.45 0.30 -53.59 16 9 Si 0.93 42.73 24.41 68.60 1.67 44.41 16 10 H -0.26 -11.26 6.83 99.48 0.68 -10.58 16 11 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.26 -11.52 6.53 99.48 0.65 -10.87 16 13 N -0.68 -24.34 4.98 -448.90 -2.23 -26.57 16 14 C 0.55 18.91 6.32 86.80 0.55 19.46 16 15 O -0.56 -21.46 10.65 -3.85 -0.04 -21.50 16 16 C -0.07 -2.03 5.94 -19.69 -0.12 -2.14 16 17 C -0.13 -2.91 9.20 22.67 0.21 -2.70 16 18 C 0.16 3.47 6.78 42.92 0.29 3.76 16 19 C -0.11 -1.36 10.14 71.24 0.72 -0.64 16 20 N -0.48 -11.96 10.19 -176.88 -1.80 -13.76 16 21 C 0.14 3.76 6.61 40.33 0.27 4.03 16 22 C -0.14 -3.32 9.94 22.40 0.22 -3.10 16 23 C 0.12 2.82 7.23 22.14 0.16 2.98 16 24 F -0.13 -2.92 17.24 44.97 0.78 -2.15 16 25 C -0.15 -3.47 9.94 22.12 0.22 -3.25 16 26 C -0.08 -2.12 9.24 22.25 0.21 -1.91 16 27 C -0.10 -2.87 5.77 -21.08 -0.12 -2.99 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.62 7.84 -2.39 -0.02 1.60 16 30 H 0.05 1.85 5.64 -2.38 -0.01 1.84 16 31 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 32 H 0.05 1.94 3.21 -2.39 -0.01 1.93 16 33 H 0.27 14.73 8.31 -92.70 -0.77 13.95 16 34 H 0.41 12.41 6.71 -92.71 -0.62 11.79 16 35 H 0.17 2.99 6.55 -2.91 -0.02 2.97 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 0.92 8.07 -2.38 -0.02 0.90 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.17 5.17 4.98 -2.91 -0.01 5.16 16 Total: -1.00 -63.45 333.83 3.21 -60.24 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.39 Total: 22.99 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.16 Total: -10.05 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -3.74 Total: -93.93 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.04 Total: -21.50 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.67 Total: 44.41 kcal Total: -63.45 3.21 -60.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116616344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.897 kcal (2) G-P(sol) polarization free energy of solvation -63.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds