Wall clock time and date at job start Tue Mar 31 2020 11:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46901 * 2 1 4 4 C 1.52996 * 109.47180 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47048 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00002 * 84.24030 * 5 4 3 7 7 H 1.08008 * 119.99632 * 325.64125 * 6 5 4 8 8 C 1.38803 * 120.00389 * 145.64798 * 6 5 4 9 9 N 1.31623 * 120.00208 * 336.82609 * 8 6 5 10 10 Si 1.86802 * 120.00222 * 156.82542 * 8 6 5 11 11 H 1.48495 * 109.47503 * 59.99962 * 10 8 6 12 12 H 1.48505 * 109.47120 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47035 * 299.99866 * 10 8 6 14 14 C 1.46494 * 119.99911 * 264.23009 * 5 4 3 15 15 C 1.50706 * 109.46654 * 90.00454 * 14 5 4 16 16 C 1.38857 * 120.30474 * 269.72255 * 15 14 5 17 17 C 1.38311 * 118.52457 * 179.71343 * 16 15 14 18 18 C 1.39441 * 119.06417 * 0.58163 * 17 16 15 19 19 C 1.48203 * 119.74137 * 179.70340 * 18 17 16 20 20 C 1.39437 * 122.79360 * 179.97438 * 19 18 17 21 21 C 1.32988 * 114.92319 * 179.97438 * 20 19 18 22 22 S 1.75814 * 109.96624 * 0.02562 * 21 20 19 23 23 C 1.34683 * 122.78808 * 359.68378 * 19 18 17 24 24 N 1.32714 * 120.52411 * 359.67998 * 18 17 16 25 25 C 1.31817 * 121.59498 * 0.02562 * 24 18 17 26 26 H 1.09002 * 109.46718 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47283 * 300.00257 * 1 2 3 28 28 H 1.09004 * 109.46590 * 60.00521 * 1 2 3 29 29 H 1.08992 * 109.47283 * 239.99743 * 2 1 3 30 30 H 1.09004 * 109.46590 * 119.99479 * 2 1 3 31 31 H 1.09000 * 109.47381 * 59.99142 * 3 2 1 32 32 H 1.09011 * 109.47110 * 299.99867 * 3 2 1 33 33 H 1.09007 * 109.46961 * 299.99450 * 4 3 2 34 34 H 1.08993 * 109.47636 * 59.99757 * 4 3 2 35 35 H 0.96998 * 120.00286 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47130 * 210.00238 * 14 5 4 37 37 H 1.08999 * 109.47198 * 330.00580 * 14 5 4 38 38 H 1.08004 * 120.73646 * 359.97438 * 16 15 14 39 39 H 1.08000 * 120.46990 * 180.26307 * 17 16 15 40 40 H 1.07999 * 122.53772 * 359.96199 * 20 19 18 41 41 H 1.08006 * 125.01966 * 179.97438 * 21 20 19 42 42 H 1.08008 * 125.23274 * 0.02562 * 23 19 18 43 43 H 1.08005 * 119.54928 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.1737 3.5098 1.1796 7 1 3.4645 3.3379 1.9758 8 6 5.2021 4.4260 1.3519 9 7 6.2982 4.3285 0.6298 10 14 5.0304 5.7973 2.6087 11 1 4.8430 5.2102 3.9597 12 1 6.2573 6.6340 2.5990 13 1 3.8548 6.6377 2.2668 14 6 4.4231 3.4712 -1.2625 15 6 3.2154 4.1643 -1.8389 16 6 2.3681 3.4890 -2.7074 17 6 1.2672 4.1586 -3.2099 18 6 1.0540 5.4857 -2.8388 19 6 -0.1173 6.2196 -3.3736 20 6 -0.3916 7.5466 -3.0448 21 6 -1.4825 8.0510 -3.6140 22 16 -2.2469 6.8357 -4.6288 23 6 -1.0022 5.6619 -4.2221 24 7 1.8913 6.0968 -2.0101 25 6 2.9443 5.4792 -1.5128 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 3.9329 0.9289 0.8910 34 1 3.9338 0.9286 -0.8890 35 1 7.0170 4.9686 0.7505 36 1 5.2102 4.2032 -1.0813 37 1 4.7810 2.7195 -1.9660 38 1 2.5620 2.4624 -2.9809 39 1 0.5851 3.6623 -3.8843 40 1 0.2344 8.1212 -2.3782 41 1 -1.8459 9.0583 -3.4730 42 1 -0.9557 4.6489 -4.5938 43 1 3.6039 6.0082 -0.8407 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139503294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:12 Heat of formation + Delta-G solvation = 72.964735 kcal Electronic energy + Delta-G solvation = -23818.098314 eV Core-core repulsion = 20568.981021 eV Total energy + Delta-G solvation = -3249.117293 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.85099 -37.59742 -36.31281 -34.20793 -32.22184 -31.62391 -31.10726 -29.13202 -27.86062 -26.11997 -24.33079 -23.44549 -22.83606 -21.65558 -20.67256 -20.19873 -18.99400 -17.81299 -16.86418 -16.28118 -15.44635 -14.99531 -14.92957 -14.41905 -14.28331 -13.95740 -13.64770 -13.54853 -13.44225 -13.05052 -12.65906 -12.52602 -12.34947 -12.23531 -12.18848 -11.93036 -11.64235 -11.24834 -11.02968 -10.89215 -10.80617 -10.60652 -10.54856 -10.48080 -10.10696 -10.05925 -9.90454 -9.17431 -9.15217 -8.92716 -8.68410 -8.53991 -7.69441 -6.72578 -5.90582 -3.42820 0.77700 1.62348 1.67177 1.85305 1.92879 2.98937 3.33344 3.39981 3.44257 4.38458 4.50630 4.68830 4.84735 5.17016 5.18885 5.27584 5.29026 5.34231 5.46748 5.53775 5.59711 5.66299 5.67725 5.77829 5.91838 5.97272 6.10773 6.11163 6.25119 6.28564 6.31346 6.32896 6.34029 6.48719 6.54993 6.59550 6.64298 6.72339 6.92445 7.03213 7.11506 7.30651 7.53606 7.73669 8.38421 8.53805 9.06386 9.69601 10.25493 11.09406 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.004246 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.237127 B = 6593.613925 C = 8183.370571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.148 3.852 5 N -0.573 5.573 6 C -0.255 4.255 7 H 0.061 0.939 8 C 0.013 3.987 9 N -0.882 5.882 10 Si 0.890 3.110 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.279 1.279 14 C 0.172 3.828 15 C -0.111 4.111 16 C -0.080 4.080 17 C -0.162 4.162 18 C 0.146 3.854 19 C -0.038 4.038 20 C -0.102 4.102 21 C -0.220 4.220 22 S 0.086 5.914 23 C -0.206 4.206 24 N -0.478 5.478 25 C 0.118 3.882 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.258 0.742 36 H 0.111 0.889 37 H 0.037 0.963 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.150 0.850 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.552 -0.279 -9.687 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.022 3.978 5 N -0.291 5.291 6 C -0.385 4.385 7 H 0.079 0.921 8 C -0.187 4.187 9 N -0.524 5.524 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.205 1.205 14 C 0.045 3.955 15 C -0.117 4.117 16 C -0.106 4.106 17 C -0.182 4.182 18 C 0.007 3.993 19 C -0.052 4.052 20 C -0.132 4.132 21 C -0.355 4.355 22 S 0.349 5.651 23 C -0.343 4.343 24 N -0.186 5.186 25 C -0.041 4.041 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.128 0.872 37 H 0.055 0.945 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.168 0.832 41 H 0.181 0.819 42 H 0.183 0.817 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.796 0.660 -10.323 17.243 hybrid contribution 1.153 -0.116 1.374 1.797 sum -12.644 0.544 -8.948 15.500 Atomic orbital electron populations 1.21759 0.96760 1.00565 1.01537 1.21493 0.95031 0.98277 1.01194 1.22260 0.99448 0.94540 1.01782 1.20919 0.91230 0.86689 0.98956 1.43750 1.75296 1.08118 1.01961 1.18997 1.07251 1.19103 0.93112 0.92090 1.25050 0.94076 1.01293 0.98328 1.69970 1.04106 1.35900 1.42442 0.86556 0.77340 0.82572 0.81613 1.20633 1.21401 1.20519 1.20093 0.92321 0.97113 0.85933 1.22338 1.00673 0.94969 0.93713 1.21354 0.93676 0.99505 0.96100 1.21820 0.99049 0.95095 1.02284 1.19095 0.93539 0.90690 0.95954 1.17668 0.95149 0.93924 0.98414 1.20257 0.97268 0.94718 1.00929 1.25430 1.01309 1.03512 1.05255 1.84053 1.28551 1.04097 1.48409 1.25680 0.99457 1.03713 1.05484 1.67592 1.03633 1.38667 1.08743 1.22607 0.93036 0.92372 0.96113 0.93534 0.93064 0.93176 0.92740 0.92506 0.92571 0.92634 0.93569 0.94669 0.93217 0.87203 0.94474 0.85711 0.86058 0.83228 0.81876 0.81659 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.88 16 3 C -0.14 -2.46 5.50 -26.73 -0.15 -2.61 16 4 C 0.15 2.93 5.72 -4.04 -0.02 2.91 16 5 N -0.57 -13.25 2.44 -174.61 -0.43 -13.68 16 6 C -0.26 -6.58 9.47 -15.06 -0.14 -6.72 16 7 H 0.06 1.61 7.93 -52.48 -0.42 1.19 16 8 C 0.01 0.34 4.94 -17.43 -0.09 0.25 16 9 N -0.88 -23.76 11.35 55.49 0.63 -23.13 16 10 Si 0.89 20.80 29.61 -169.99 -5.03 15.76 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.17 3.75 5.48 -5.19 -0.03 3.72 16 15 C -0.11 -2.19 5.46 -104.42 -0.57 -2.76 16 16 C -0.08 -1.35 8.05 -39.33 -0.32 -1.67 16 17 C -0.16 -2.55 9.51 -39.11 -0.37 -2.93 16 18 C 0.15 2.54 6.75 -82.94 -0.56 1.98 16 19 C -0.04 -0.58 5.79 -106.61 -0.62 -1.19 16 20 C -0.10 -1.43 9.72 -40.95 -0.40 -1.83 16 21 C -0.22 -2.52 11.18 28.91 0.32 -2.20 16 22 S 0.09 0.91 23.32 -107.50 -2.51 -1.60 16 23 C -0.21 -2.55 10.50 29.47 0.31 -2.24 16 24 N -0.48 -9.36 9.79 -9.79 -0.10 -9.46 16 25 C 0.12 2.42 10.85 -17.58 -0.19 2.23 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.99 6.19 -51.92 -0.32 0.67 16 33 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 34 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.11 2.71 5.30 -51.93 -0.28 2.43 16 37 H 0.04 0.76 7.80 -51.93 -0.41 0.35 16 38 H 0.12 1.88 8.04 -52.48 -0.42 1.45 16 39 H 0.12 1.53 6.60 -52.49 -0.35 1.18 16 40 H 0.15 2.17 7.89 -52.49 -0.41 1.76 16 41 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 42 H 0.17 1.70 6.79 -52.48 -0.36 1.34 16 43 H 0.15 3.33 8.06 -52.48 -0.42 2.91 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -27.52 368.37 -10.79 -38.31 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.30 Total: 4.69 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.61 Total: -16.46 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.11 Total: -46.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.52 -10.79 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139503294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.279 kcal (2) G-P(sol) polarization free energy of solvation -27.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds