Wall clock time and date at job start Tue Mar 31 2020 11:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46901 * 2 1 4 4 C 1.52996 * 109.47180 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47048 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00002 * 84.24030 * 5 4 3 7 7 H 1.08008 * 119.99632 * 325.64125 * 6 5 4 8 8 C 1.38803 * 120.00389 * 145.64798 * 6 5 4 9 9 N 1.31623 * 120.00208 * 336.82609 * 8 6 5 10 10 Si 1.86802 * 120.00222 * 156.82542 * 8 6 5 11 11 H 1.48495 * 109.47503 * 59.99962 * 10 8 6 12 12 H 1.48505 * 109.47120 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47035 * 299.99866 * 10 8 6 14 14 C 1.46494 * 119.99911 * 264.23009 * 5 4 3 15 15 C 1.50706 * 109.46654 * 90.00454 * 14 5 4 16 16 C 1.38857 * 120.30474 * 269.72255 * 15 14 5 17 17 C 1.38311 * 118.52457 * 179.71343 * 16 15 14 18 18 C 1.39441 * 119.06417 * 0.58163 * 17 16 15 19 19 C 1.48203 * 119.74137 * 179.70340 * 18 17 16 20 20 C 1.39437 * 122.79360 * 179.97438 * 19 18 17 21 21 C 1.32988 * 114.92319 * 179.97438 * 20 19 18 22 22 S 1.75814 * 109.96624 * 0.02562 * 21 20 19 23 23 C 1.34683 * 122.78808 * 359.68378 * 19 18 17 24 24 N 1.32714 * 120.52411 * 359.67998 * 18 17 16 25 25 C 1.31817 * 121.59498 * 0.02562 * 24 18 17 26 26 H 1.09002 * 109.46718 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47283 * 300.00257 * 1 2 3 28 28 H 1.09004 * 109.46590 * 60.00521 * 1 2 3 29 29 H 1.08992 * 109.47283 * 239.99743 * 2 1 3 30 30 H 1.09004 * 109.46590 * 119.99479 * 2 1 3 31 31 H 1.09000 * 109.47381 * 59.99142 * 3 2 1 32 32 H 1.09011 * 109.47110 * 299.99867 * 3 2 1 33 33 H 1.09007 * 109.46961 * 299.99450 * 4 3 2 34 34 H 1.08993 * 109.47636 * 59.99757 * 4 3 2 35 35 H 0.96998 * 120.00286 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47130 * 210.00238 * 14 5 4 37 37 H 1.08999 * 109.47198 * 330.00580 * 14 5 4 38 38 H 1.08004 * 120.73646 * 359.97438 * 16 15 14 39 39 H 1.08000 * 120.46990 * 180.26307 * 17 16 15 40 40 H 1.07999 * 122.53772 * 359.96199 * 20 19 18 41 41 H 1.08006 * 125.01966 * 179.97438 * 21 20 19 42 42 H 1.08008 * 125.23274 * 0.02562 * 23 19 18 43 43 H 1.08005 * 119.54928 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.1737 3.5098 1.1796 7 1 3.4645 3.3379 1.9758 8 6 5.2021 4.4260 1.3519 9 7 6.2982 4.3285 0.6298 10 14 5.0304 5.7973 2.6087 11 1 4.8430 5.2102 3.9597 12 1 6.2573 6.6340 2.5990 13 1 3.8548 6.6377 2.2668 14 6 4.4231 3.4712 -1.2625 15 6 3.2154 4.1643 -1.8389 16 6 2.3681 3.4890 -2.7074 17 6 1.2672 4.1586 -3.2099 18 6 1.0540 5.4857 -2.8388 19 6 -0.1173 6.2196 -3.3736 20 6 -0.3916 7.5466 -3.0448 21 6 -1.4825 8.0510 -3.6140 22 16 -2.2469 6.8357 -4.6288 23 6 -1.0022 5.6619 -4.2221 24 7 1.8913 6.0968 -2.0101 25 6 2.9443 5.4792 -1.5128 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 3.9329 0.9289 0.8910 34 1 3.9338 0.9286 -0.8890 35 1 7.0170 4.9686 0.7505 36 1 5.2102 4.2032 -1.0813 37 1 4.7810 2.7195 -1.9660 38 1 2.5620 2.4624 -2.9809 39 1 0.5851 3.6623 -3.8843 40 1 0.2344 8.1212 -2.3782 41 1 -1.8459 9.0583 -3.4730 42 1 -0.9557 4.6489 -4.5938 43 1 3.6039 6.0082 -0.8407 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139503294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:12 Heat of formation + Delta-G solvation = 61.057918 kcal Electronic energy + Delta-G solvation = -23818.614632 eV Core-core repulsion = 20568.981021 eV Total energy + Delta-G solvation = -3249.633611 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21830 -38.78280 -37.83307 -35.61619 -33.83581 -33.04728 -32.64150 -30.29738 -29.26343 -27.72635 -25.84842 -24.66898 -24.24026 -22.98514 -22.08584 -21.72029 -20.10051 -18.81745 -18.68903 -17.57825 -17.01147 -16.49508 -16.28636 -15.93563 -15.51708 -15.45118 -15.33529 -14.88188 -14.73609 -14.21400 -13.89216 -13.71246 -13.68286 -13.46308 -13.29618 -13.23905 -13.09456 -12.93478 -12.79787 -12.52279 -12.13331 -12.02110 -11.94780 -11.82946 -11.80286 -11.67205 -11.34473 -10.58664 -10.53010 -10.36057 -10.28330 -9.63361 -8.87623 -8.61186 -7.86362 -5.42687 -0.29919 0.39984 0.51486 0.72440 0.98624 1.41111 1.46191 1.51454 1.84101 2.47928 3.05126 3.22594 3.41862 3.75784 3.78393 4.11465 4.14017 4.16320 4.19074 4.25057 4.37419 4.43710 4.46754 4.56187 4.60861 4.65517 4.83525 4.89715 4.98123 4.99736 5.06958 5.09243 5.12012 5.20033 5.21900 5.37680 5.41371 5.42359 5.51537 5.56517 5.64971 5.68115 5.73876 5.92738 6.43773 7.11580 7.13871 7.83991 8.33800 9.09165 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.004246 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.237127 B = 6593.613925 C = 8183.370571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.146 3.854 5 N -0.588 5.588 6 C -0.260 4.260 7 H 0.047 0.953 8 C -0.022 4.022 9 N -0.907 5.907 10 Si 0.937 3.063 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.287 1.287 14 C 0.180 3.820 15 C -0.127 4.127 16 C -0.069 4.069 17 C -0.154 4.154 18 C 0.146 3.854 19 C -0.076 4.076 20 C -0.132 4.132 21 C -0.217 4.217 22 S 0.152 5.848 23 C -0.198 4.198 24 N -0.501 5.501 25 C 0.097 3.903 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.053 0.947 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.130 0.870 41 H 0.188 0.812 42 H 0.191 0.809 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.850 -1.546 -12.171 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.165 4.165 4 C 0.021 3.979 5 N -0.307 5.307 6 C -0.390 4.390 7 H 0.065 0.935 8 C -0.221 4.221 9 N -0.551 5.551 10 Si 0.766 3.234 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.213 1.213 14 C 0.053 3.947 15 C -0.132 4.132 16 C -0.096 4.096 17 C -0.174 4.174 18 C 0.006 3.994 19 C -0.089 4.089 20 C -0.162 4.162 21 C -0.352 4.352 22 S 0.416 5.584 23 C -0.335 4.335 24 N -0.211 5.211 25 C -0.061 4.061 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.148 0.852 41 H 0.205 0.795 42 H 0.208 0.792 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.109 -0.610 -12.809 21.381 hybrid contribution 1.961 0.324 1.971 2.799 sum -15.148 -0.286 -10.838 18.628 Atomic orbital electron populations 1.21729 0.95334 1.01944 1.01312 1.21449 0.96228 0.95676 1.02076 1.22058 0.97428 0.96741 1.00293 1.21028 0.92757 0.85057 0.99041 1.43910 1.75758 1.09447 1.01626 1.19039 1.06521 1.19478 0.93951 0.93516 1.25481 0.94009 1.02708 0.99860 1.70057 1.04600 1.36489 1.43919 0.85821 0.76731 0.80663 0.80230 1.20243 1.21352 1.21324 1.19854 0.92521 0.96581 0.85736 1.22023 1.00660 0.94792 0.95695 1.21585 0.93029 1.00388 0.94576 1.22213 0.98950 0.94298 1.01936 1.19691 0.93412 0.91741 0.94510 1.17685 0.95719 0.94598 1.00909 1.20205 0.98658 0.94951 1.02378 1.25769 1.00232 1.04987 1.04202 1.83911 1.26230 1.02016 1.46231 1.26084 0.98793 1.05186 1.03418 1.67552 1.04000 1.39421 1.10078 1.22283 0.93767 0.93051 0.96986 0.91348 0.93984 0.92750 0.90977 0.92524 0.95461 0.92646 0.95093 0.92830 0.93662 0.90491 0.93347 0.83120 0.81762 0.85199 0.79513 0.79151 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.12 -3.03 5.93 30.60 0.18 -2.85 16 3 C -0.13 -4.31 5.50 30.59 0.17 -4.14 16 4 C 0.15 5.80 5.72 86.38 0.49 6.30 16 5 N -0.59 -28.02 2.44 -706.34 -1.72 -29.74 16 6 C -0.26 -13.98 9.47 84.03 0.80 -13.19 16 7 H 0.05 2.60 7.93 -2.91 -0.02 2.58 16 8 C -0.02 -1.22 4.94 84.86 0.42 -0.80 16 9 N -0.91 -51.14 11.35 21.65 0.25 -50.90 16 10 Si 0.94 44.79 29.61 68.60 2.03 46.82 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 C 0.18 8.08 5.48 85.64 0.47 8.55 16 15 C -0.13 -5.09 5.46 -19.73 -0.11 -5.20 16 16 C -0.07 -2.22 8.05 22.44 0.18 -2.04 16 17 C -0.15 -4.43 9.51 22.58 0.21 -4.22 16 18 C 0.15 4.95 6.75 41.95 0.28 5.23 16 19 C -0.08 -2.14 5.79 -21.16 -0.12 -2.26 16 20 C -0.13 -3.62 9.72 21.39 0.21 -3.41 16 21 C -0.22 -4.42 11.18 66.65 0.75 -3.67 16 22 S 0.15 2.58 23.32 -56.49 -1.32 1.26 16 23 C -0.20 -4.10 10.50 67.00 0.70 -3.40 16 24 N -0.50 -20.37 9.79 -184.89 -1.81 -22.18 16 25 C 0.10 4.22 10.85 84.68 0.92 5.13 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.89 6.19 -2.38 -0.01 1.87 16 33 H 0.03 1.29 8.09 -2.38 -0.02 1.27 16 34 H 0.05 1.91 7.83 -2.39 -0.02 1.89 16 35 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 36 H 0.08 4.02 5.30 -2.39 -0.01 4.01 16 37 H 0.05 2.00 7.80 -2.39 -0.02 1.98 16 38 H 0.15 4.01 8.04 -2.91 -0.02 3.98 16 39 H 0.16 3.26 6.60 -2.91 -0.02 3.25 16 40 H 0.13 3.96 7.89 -2.91 -0.02 3.93 16 41 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.19 2.85 6.79 -2.91 -0.02 2.83 16 43 H 0.12 5.97 8.06 -2.91 -0.02 5.95 16 Total: -1.00 -63.31 368.37 4.68 -58.62 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.99 Total: 18.67 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 6.27 Total: -22.56 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.29 Total: -102.81 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.32 Total: 1.26 kcal Total: -63.31 4.68 -58.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139503294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.680 kcal (2) G-P(sol) polarization free energy of solvation -63.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds