Wall clock time and date at job start Tue Mar 31 2020 11:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 C 1.53000 * 109.47077 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46846 * 180.02562 * 4 3 2 6 6 C 1.36934 * 120.00176 * 275.65007 * 5 4 3 7 7 H 1.08000 * 119.99328 * 34.01104 * 6 5 4 8 8 C 1.38813 * 120.00423 * 214.00469 * 6 5 4 9 9 N 1.31619 * 119.99672 * 22.92381 * 8 6 5 10 10 Si 1.86793 * 120.00027 * 202.92347 * 8 6 5 11 11 H 1.48504 * 109.47240 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47175 * 120.00140 * 10 8 6 13 13 H 1.48503 * 109.47370 * 240.00169 * 10 8 6 14 14 C 1.46503 * 119.99809 * 95.66114 * 5 4 3 15 15 C 1.50708 * 109.46765 * 269.99478 * 14 5 4 16 16 C 1.38372 * 119.92846 * 270.02330 * 15 14 5 17 17 C 1.38326 * 120.28658 * 180.02562 * 16 15 14 18 18 C 1.37986 * 120.14328 * 359.95784 * 17 16 15 19 19 C 1.39530 * 119.85528 * 0.02562 * 18 17 16 20 20 C 1.47865 * 120.14029 * 180.02562 * 19 18 17 21 21 N 1.30231 * 125.47040 * 179.68881 * 20 19 18 22 22 C 1.31303 * 117.04132 * 179.81546 * 21 20 19 23 23 C 1.33727 * 115.84724 * 0.48710 * 22 21 20 24 24 S 1.76171 * 125.47654 * 0.02562 * 20 19 18 25 25 C 1.37941 * 119.92451 * 90.00576 * 15 14 5 26 26 H 1.09000 * 109.47329 * 59.99949 * 1 2 3 27 27 H 1.08997 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47303 * 299.99706 * 1 2 3 29 29 H 1.09005 * 109.47087 * 240.00084 * 2 1 3 30 30 H 1.08994 * 109.46760 * 120.00459 * 2 1 3 31 31 H 1.08998 * 109.46828 * 60.00413 * 3 2 1 32 32 H 1.09000 * 109.47083 * 300.00201 * 3 2 1 33 33 H 1.09005 * 109.47087 * 60.00084 * 4 3 2 34 34 H 1.09003 * 109.46833 * 300.00149 * 4 3 2 35 35 H 0.97001 * 119.99999 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47140 * 149.99625 * 14 5 4 37 37 H 1.08995 * 109.47324 * 29.99277 * 14 5 4 38 38 H 1.07997 * 119.85590 * 0.02562 * 16 15 14 39 39 H 1.07998 * 119.92882 * 179.97438 * 17 16 15 40 40 H 1.07995 * 120.07227 * 180.29649 * 18 17 16 41 41 H 1.08001 * 122.07987 * 180.23775 * 22 21 20 42 42 H 1.08004 * 125.89261 * 179.77636 * 23 22 21 43 43 H 1.07997 * 120.07846 * 359.96765 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.1769 3.5085 -1.1786 7 1 3.4731 3.3318 -1.9785 8 6 5.2015 4.4299 -1.3464 9 7 6.2919 4.3421 -0.6145 10 14 5.0328 5.7943 -2.6110 11 1 3.7215 5.6737 -3.2974 12 1 5.1158 7.1121 -1.9314 13 1 6.1267 5.6823 -3.6091 14 6 4.4198 3.4722 1.2642 15 6 3.2106 4.1659 1.8369 16 6 2.9472 5.4825 1.5026 17 6 1.8398 6.1266 2.0243 18 6 0.9897 5.4585 2.8816 19 6 1.2495 4.1306 3.2225 20 6 0.3424 3.4085 4.1402 21 7 0.4818 2.1713 4.5221 22 6 -0.4224 1.6957 5.3470 23 6 -1.3970 2.5426 5.6949 24 16 -1.1051 4.0810 4.8860 25 6 2.3688 3.4867 2.6928 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9329 0.9287 0.8909 35 1 7.0080 4.9857 -0.7320 36 1 5.2074 4.2041 1.0844 37 1 4.7758 2.7212 1.9694 38 1 3.6091 6.0096 0.8314 39 1 1.6399 7.1544 1.7598 40 1 0.1227 5.9609 3.2845 41 1 -0.3836 0.6822 5.7181 42 1 -2.2209 2.3220 6.3575 43 1 2.5750 2.4589 2.9523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140336665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:03 Heat of formation + Delta-G solvation = 63.510973 kcal Electronic energy + Delta-G solvation = -24122.303890 eV Core-core repulsion = 20872.776651 eV Total energy + Delta-G solvation = -3249.527239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75355 -39.83046 -37.86099 -35.62609 -33.60172 -33.08340 -32.17521 -30.15589 -29.42881 -27.46339 -26.30508 -25.44852 -23.47884 -22.98362 -21.91611 -21.72624 -20.38217 -19.10457 -18.49129 -17.41067 -16.86822 -16.58001 -16.30111 -15.99213 -15.62459 -15.49416 -15.28929 -15.20400 -14.82940 -14.37659 -14.15317 -13.95340 -13.69870 -13.57366 -13.25436 -13.03662 -12.80371 -12.71370 -12.52136 -12.36728 -12.15561 -12.08147 -11.88711 -11.85805 -11.74685 -11.57181 -11.29607 -10.74794 -10.66335 -10.49511 -10.25059 -9.60099 -9.04783 -8.58821 -7.81352 -5.39018 -0.69857 0.31743 0.55098 0.69329 0.76283 1.44146 1.49036 1.58315 1.97781 2.51899 2.93807 3.09376 3.25937 3.79599 3.96576 4.07043 4.14051 4.15546 4.25235 4.35575 4.39971 4.40809 4.51744 4.54507 4.55719 4.67163 4.81857 4.87776 4.98791 5.03196 5.05175 5.07899 5.15840 5.17662 5.22181 5.37816 5.49551 5.49987 5.54565 5.62433 5.65765 5.74951 5.96938 6.08821 6.47940 6.79157 7.16608 7.86037 8.38936 9.15079 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.004531 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.896234 B = 6178.559979 C = 7415.290087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.123 4.123 4 C 0.148 3.852 5 N -0.589 5.589 6 C -0.255 4.255 7 H 0.050 0.950 8 C -0.029 4.029 9 N -0.913 5.913 10 Si 0.945 3.055 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.292 1.292 14 C 0.175 3.825 15 C -0.085 4.085 16 C -0.100 4.100 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.047 4.047 20 C 0.101 3.899 21 N -0.495 5.495 22 C 0.020 3.980 23 C -0.240 4.240 24 S 0.108 5.892 25 C -0.072 4.072 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.196 0.804 42 H 0.214 0.786 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.162 -1.442 11.889 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.162 4.162 4 C 0.022 3.978 5 N -0.308 5.308 6 C -0.385 4.385 7 H 0.068 0.932 8 C -0.226 4.226 9 N -0.558 5.558 10 Si 0.773 3.227 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.220 1.220 14 C 0.050 3.950 15 C -0.088 4.088 16 C -0.120 4.120 17 C -0.134 4.134 18 C -0.128 4.128 19 C -0.051 4.051 20 C -0.172 4.172 21 N -0.210 5.210 22 C -0.130 4.130 23 C -0.378 4.378 24 S 0.363 5.637 25 C -0.094 4.094 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.122 0.878 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.213 0.787 42 H 0.230 0.770 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.132 -0.757 11.704 19.945 hybrid contribution 0.477 -0.219 -0.526 0.744 sum -15.655 -0.977 11.177 19.260 Atomic orbital electron populations 1.21674 0.95319 1.01843 1.00999 1.21434 0.96271 0.95972 1.01735 1.22018 0.97371 0.96556 1.00301 1.20982 0.92845 0.85473 0.98479 1.43917 1.75791 1.09272 1.01862 1.19141 1.06895 1.18946 0.93549 0.93214 1.25579 0.93877 1.03041 1.00084 1.70093 1.05242 1.36509 1.43933 0.85568 0.77486 0.80342 0.79278 1.19745 1.20828 1.21951 1.19929 0.93267 0.96359 0.85490 1.20938 0.98897 0.94334 0.94616 1.21249 0.97787 0.94682 0.98273 1.21230 0.93991 1.00990 0.97171 1.21190 1.00208 0.92541 0.98834 1.17943 0.94826 0.94012 0.98346 1.25919 0.97887 0.92398 1.01038 1.66549 1.29096 1.11218 1.14118 1.22090 0.90855 1.03126 0.96959 1.27473 1.06658 0.95113 1.08580 1.84689 1.22088 1.15737 1.41192 1.20940 0.93265 0.99110 0.96096 0.93293 0.91310 0.93913 0.92001 0.92018 0.93209 0.94671 0.94866 0.94083 0.93752 0.89986 0.95112 0.87777 0.83141 0.83720 0.78741 0.76955 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.12 -3.53 5.93 30.59 0.18 -3.34 16 3 C -0.12 -4.69 5.51 30.59 0.17 -4.52 16 4 C 0.15 6.41 5.72 86.38 0.49 6.90 16 5 N -0.59 -29.40 2.44 -706.32 -1.73 -31.13 16 6 C -0.26 -13.85 9.48 84.03 0.80 -13.05 16 7 H 0.05 2.76 7.93 -2.91 -0.02 2.74 16 8 C -0.03 -1.54 4.95 84.86 0.42 -1.12 16 9 N -0.91 -51.98 11.31 21.65 0.24 -51.73 16 10 Si 0.95 43.70 29.61 68.60 2.03 45.74 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 14 C 0.18 8.39 5.45 85.64 0.47 8.86 16 15 C -0.08 -3.54 5.44 -19.90 -0.11 -3.65 16 16 C -0.10 -3.91 9.69 22.32 0.22 -3.69 16 17 C -0.12 -3.58 10.03 22.23 0.22 -3.36 16 18 C -0.11 -3.08 9.61 22.52 0.22 -2.86 16 19 C -0.05 -1.55 5.87 -20.10 -0.12 -1.67 16 20 C 0.10 2.94 7.35 87.48 0.64 3.58 16 21 N -0.50 -14.63 10.14 -189.85 -1.93 -16.56 16 22 C 0.02 0.44 11.25 83.75 0.94 1.38 16 23 C -0.24 -4.05 11.35 66.79 0.76 -3.29 16 24 S 0.11 2.21 22.40 -56.49 -1.27 0.94 16 25 C -0.07 -2.71 7.50 22.52 0.17 -2.54 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.99 6.12 -2.39 -0.01 1.98 16 32 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 1.48 8.09 -2.38 -0.02 1.46 16 34 H 0.04 1.70 7.83 -2.39 -0.02 1.68 16 35 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 36 H 0.08 4.42 5.26 -2.39 -0.01 4.41 16 37 H 0.03 1.43 7.80 -2.39 -0.02 1.41 16 38 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 40 H 0.15 3.20 7.30 -2.91 -0.02 3.17 16 41 H 0.20 3.04 8.06 -2.91 -0.02 3.01 16 42 H 0.21 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.11 4.48 7.78 -2.91 -0.02 4.46 16 Total: -1.00 -63.00 369.77 4.53 -58.47 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.99 Total: 19.67 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 6.18 Total: -25.40 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -3.41 Total: -99.42 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.27 Total: 0.94 kcal Total: -63.00 4.53 -58.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140336665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.984 kcal (2) G-P(sol) polarization free energy of solvation -63.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds