Wall clock time and date at job start Tue Mar 31 2020 11:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 N 1.46904 * 109.47040 * 182.39675 * 3 2 1 5 5 C 1.46906 * 110.99901 * 187.21697 * 4 3 2 6 6 C 1.50699 * 109.47146 * 66.04672 * 5 4 3 7 7 H 1.08005 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00230 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99889 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00065 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47255 * 90.00017 * 10 8 6 12 12 H 1.48505 * 109.47255 * 209.99887 * 10 8 6 13 13 H 1.48493 * 109.47463 * 329.99725 * 10 8 6 14 14 C 1.46900 * 110.99897 * 63.26397 * 4 3 2 15 15 C 1.50704 * 109.46979 * 185.30464 * 14 4 3 16 16 C 1.37987 * 120.07160 * 261.32818 * 15 14 4 17 17 C 1.38333 * 120.13720 * 179.97438 * 16 15 14 18 18 C 1.38365 * 120.29473 * 0.02562 * 17 16 15 19 19 C 1.37950 * 120.13902 * 359.97438 * 18 17 16 20 20 C 1.39531 * 120.07161 * 81.04655 * 15 14 4 21 21 C 1.47870 * 120.13875 * 0.02590 * 20 15 14 22 22 N 1.30222 * 125.47558 * 6.72258 * 21 20 15 23 23 C 1.31305 * 117.04057 * 179.84078 * 22 21 20 24 24 C 1.33721 * 115.84773 * 0.45879 * 23 22 21 25 25 S 1.76181 * 125.46838 * 187.03626 * 21 20 15 26 26 H 1.08998 * 109.46728 * 55.03462 * 1 2 3 27 27 H 1.09005 * 109.46916 * 175.03387 * 1 2 3 28 28 H 1.08990 * 109.47320 * 295.03165 * 1 2 3 29 29 H 1.08996 * 109.47337 * 240.00206 * 2 1 3 30 30 H 1.09001 * 109.46794 * 119.99326 * 2 1 3 31 31 H 1.09001 * 109.47349 * 62.39923 * 3 2 1 32 32 H 1.08997 * 109.47419 * 302.39424 * 3 2 1 33 33 H 1.09003 * 109.46966 * 186.04433 * 5 4 3 34 34 H 1.08996 * 109.46993 * 306.04890 * 5 4 3 35 35 H 0.96999 * 119.99893 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46835 * 305.30628 * 14 4 3 37 37 H 1.08998 * 109.46957 * 65.31026 * 14 4 3 38 38 H 1.08003 * 119.92957 * 359.94872 * 16 15 14 39 39 H 1.08001 * 119.84907 * 179.97438 * 17 16 15 40 40 H 1.07992 * 119.93150 * 180.02562 * 18 17 16 41 41 H 1.08000 * 120.07370 * 180.02562 * 19 18 17 42 42 H 1.08003 * 122.07479 * 180.22343 * 23 22 21 43 43 H 1.08010 * 125.89026 * 179.76112 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5079 1.4430 -0.0579 5 6 4.0410 2.8012 0.1124 6 6 3.7370 3.2892 1.5055 7 1 3.2017 2.6536 2.1955 8 6 4.1432 4.5464 1.8996 9 7 4.7963 5.3197 1.0599 10 14 3.7670 5.1509 3.6265 11 1 4.8806 4.7777 4.5352 12 1 3.6140 6.6279 3.6117 13 1 2.5072 4.5277 4.1057 14 6 3.9854 0.8433 -1.3110 15 6 5.4887 0.7423 -1.2786 16 6 6.2596 1.6964 -1.9106 17 6 7.6396 1.6053 -1.8812 18 6 8.2561 0.5582 -1.2195 19 6 7.4968 -0.4022 -0.5837 20 6 6.1042 -0.3130 -0.6045 21 6 5.2842 -1.3359 0.0797 22 7 3.9867 -1.4282 0.0199 23 6 3.4263 -2.4068 0.6926 24 6 4.2608 -3.1974 1.3757 25 16 5.9054 -2.6206 1.1129 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3633 -1.0239 -0.0890 28 1 -0.3633 0.4348 0.9310 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 1.7122 1.9438 0.9107 32 1 1.6420 1.9686 -0.8677 33 1 5.1201 2.7899 -0.0412 34 1 3.5773 3.4674 -0.6151 35 1 5.0817 6.2043 1.3371 36 1 3.5567 -0.1524 -1.4238 37 1 3.6813 1.4672 -2.1514 38 1 5.7845 2.5158 -2.4296 39 1 8.2385 2.3545 -2.3778 40 1 9.3339 0.4930 -1.1999 41 1 7.9791 -1.2189 -0.0671 42 1 2.3573 -2.5611 0.6971 43 1 3.9761 -4.0435 1.9836 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140454197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:36 Heat of formation + Delta-G solvation = 82.807139 kcal Electronic energy + Delta-G solvation = -24726.659713 eV Core-core repulsion = 21477.969218 eV Total energy + Delta-G solvation = -3248.690495 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.81553 -38.48487 -36.70570 -33.09063 -32.60899 -31.89869 -30.69618 -28.98458 -27.31046 -26.00284 -24.95039 -23.82918 -22.09239 -21.61353 -21.08971 -19.63905 -18.99540 -17.95138 -16.36826 -16.10336 -15.58265 -14.93502 -14.77526 -14.49300 -14.46754 -14.28006 -14.04329 -13.40509 -13.31770 -13.05036 -12.81486 -12.59962 -12.18789 -11.99984 -11.94495 -11.55630 -11.36850 -11.23943 -10.96658 -10.89821 -10.75769 -10.59451 -10.53647 -10.15726 -9.84543 -9.65858 -9.59944 -9.16092 -9.03209 -8.92681 -8.45463 -8.29318 -7.85173 -6.98537 -5.95181 -3.94450 0.53299 1.50783 1.70875 1.87013 1.93130 3.23108 3.35227 3.40905 3.44789 4.12649 4.29149 4.49486 5.10730 5.14072 5.19372 5.27665 5.30231 5.39786 5.42296 5.59533 5.64369 5.67636 5.68893 5.82701 5.95779 6.03816 6.16566 6.17984 6.23890 6.32103 6.39474 6.41337 6.58302 6.66082 6.72298 6.78696 6.93915 6.99236 7.05653 7.23861 7.47163 7.49121 7.91009 8.02717 8.23842 8.40218 8.71321 9.13462 9.68678 11.15736 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.005900 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.961908 B = 4744.483838 C = 5905.574136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.071 3.929 4 N -0.516 5.516 5 C 0.188 3.812 6 C -0.500 4.500 7 H 0.060 0.940 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.892 3.108 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 C 0.078 3.922 15 C -0.010 4.010 16 C -0.107 4.107 17 C -0.100 4.100 18 C -0.128 4.128 19 C -0.101 4.101 20 C -0.022 4.022 21 C 0.150 3.850 22 N -0.433 5.433 23 C 0.045 3.955 24 C -0.262 4.262 25 S 0.051 5.949 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.012 0.988 33 H 0.036 0.964 34 H -0.015 1.015 35 H 0.259 0.741 36 H 0.110 0.890 37 H 0.018 0.982 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.170 0.830 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -15.627 -5.028 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.057 4.057 4 N -0.240 5.240 5 C 0.062 3.938 6 C -0.539 4.539 7 H 0.078 0.922 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.050 4.050 15 C -0.014 4.014 16 C -0.126 4.126 17 C -0.119 4.119 18 C -0.146 4.146 19 C -0.122 4.122 20 C -0.027 4.027 21 C -0.125 4.125 22 N -0.146 5.146 23 C -0.106 4.106 24 C -0.400 4.400 25 S 0.307 5.693 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.002 0.998 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.036 0.964 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.187 0.813 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.741 -15.756 -4.545 16.626 hybrid contribution -1.299 0.971 0.617 1.735 sum 1.443 -14.784 -3.928 15.365 Atomic orbital electron populations 1.21795 0.97428 1.00384 1.01324 1.21687 0.93187 0.97984 1.02538 1.21914 0.88344 0.95001 1.00448 1.62043 1.07313 1.23962 1.30715 1.19812 0.95745 0.82017 0.96181 1.21168 1.35518 0.99222 0.97955 0.92190 1.24945 0.95528 0.96826 0.97242 1.69954 1.39365 1.09557 1.35004 0.86586 0.78685 0.77671 0.84990 1.20780 1.21380 1.19971 1.21408 0.89719 1.01862 0.92005 1.19959 0.96632 0.91722 0.93046 1.21109 0.93700 0.97953 0.99822 1.21225 0.94727 0.97491 0.98472 1.20878 0.99507 0.95048 0.99194 1.21018 0.92045 0.99412 0.99713 1.17605 0.91312 0.94066 0.99688 1.25863 0.91358 0.97046 0.98266 1.66784 1.07429 1.18832 1.21506 1.21756 1.01675 0.91202 0.95989 1.26847 0.94656 1.08156 1.10386 1.84790 1.10198 1.27238 1.47106 0.93403 0.93616 0.93175 0.91808 0.91550 0.90414 0.96998 0.94564 0.99761 0.93142 0.87236 0.96375 0.85613 0.85945 0.85909 0.86307 0.81281 0.81120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.70 16 2 C -0.12 -1.87 4.29 -26.73 -0.11 -1.99 16 3 C 0.07 1.44 4.81 -3.82 -0.02 1.42 16 4 N -0.52 -11.37 4.20 -237.51 -1.00 -12.36 16 5 C 0.19 4.96 4.50 -4.97 -0.02 4.93 16 6 C -0.50 -14.37 8.41 -34.44 -0.29 -14.66 16 7 H 0.06 1.74 7.15 -52.48 -0.38 1.36 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.08 1.49 3.99 -4.97 -0.02 1.47 16 15 C -0.01 -0.18 4.50 -104.23 -0.47 -0.64 16 16 C -0.11 -1.86 8.31 -39.64 -0.33 -2.19 16 17 C -0.10 -1.49 10.04 -39.50 -0.40 -1.89 16 18 C -0.13 -1.76 10.03 -39.64 -0.40 -2.16 16 19 C -0.10 -1.49 9.60 -39.19 -0.38 -1.87 16 20 C -0.02 -0.38 5.87 -104.98 -0.62 -1.00 16 21 C 0.15 2.44 7.24 -14.29 -0.10 2.34 16 22 N -0.43 -6.97 4.81 -11.36 -0.05 -7.02 16 23 C 0.05 0.61 9.75 -19.36 -0.19 0.42 16 24 C -0.26 -3.14 11.35 29.15 0.33 -2.81 16 25 S 0.05 0.68 22.43 -107.50 -2.41 -1.74 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.01 5.80 -51.93 -0.30 0.71 16 30 H 0.07 1.11 5.95 -51.93 -0.31 0.80 16 31 H 0.08 1.74 6.69 -51.93 -0.35 1.39 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.04 1.02 5.88 -51.93 -0.31 0.71 16 34 H -0.02 -0.44 8.12 -51.93 -0.42 -0.86 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.11 1.97 3.86 -51.93 -0.20 1.77 16 37 H 0.02 0.35 8.02 -51.93 -0.42 -0.07 16 38 H 0.13 2.16 8.04 -52.48 -0.42 1.74 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.48 7.33 -52.49 -0.38 1.09 16 42 H 0.17 1.89 7.44 -52.48 -0.39 1.50 16 43 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -31.43 352.99 -11.14 -42.57 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.97 Total: 1.12 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.74 Total: -18.82 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.31 Total: -45.67 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.41 Total: -1.74 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.43 -11.14 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140454197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.372 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds