Wall clock time and date at job start Tue Mar 31 2020 11:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 N 1.46904 * 109.47040 * 182.39675 * 3 2 1 5 5 C 1.46906 * 110.99901 * 187.21697 * 4 3 2 6 6 C 1.50699 * 109.47146 * 66.04672 * 5 4 3 7 7 H 1.08005 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00230 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99889 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00065 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47255 * 90.00017 * 10 8 6 12 12 H 1.48505 * 109.47255 * 209.99887 * 10 8 6 13 13 H 1.48493 * 109.47463 * 329.99725 * 10 8 6 14 14 C 1.46900 * 110.99897 * 63.26397 * 4 3 2 15 15 C 1.50704 * 109.46979 * 185.30464 * 14 4 3 16 16 C 1.37987 * 120.07160 * 261.32818 * 15 14 4 17 17 C 1.38333 * 120.13720 * 179.97438 * 16 15 14 18 18 C 1.38365 * 120.29473 * 0.02562 * 17 16 15 19 19 C 1.37950 * 120.13902 * 359.97438 * 18 17 16 20 20 C 1.39531 * 120.07161 * 81.04655 * 15 14 4 21 21 C 1.47870 * 120.13875 * 0.02590 * 20 15 14 22 22 N 1.30222 * 125.47558 * 6.72258 * 21 20 15 23 23 C 1.31305 * 117.04057 * 179.84078 * 22 21 20 24 24 C 1.33721 * 115.84773 * 0.45879 * 23 22 21 25 25 S 1.76181 * 125.46838 * 187.03626 * 21 20 15 26 26 H 1.08998 * 109.46728 * 55.03462 * 1 2 3 27 27 H 1.09005 * 109.46916 * 175.03387 * 1 2 3 28 28 H 1.08990 * 109.47320 * 295.03165 * 1 2 3 29 29 H 1.08996 * 109.47337 * 240.00206 * 2 1 3 30 30 H 1.09001 * 109.46794 * 119.99326 * 2 1 3 31 31 H 1.09001 * 109.47349 * 62.39923 * 3 2 1 32 32 H 1.08997 * 109.47419 * 302.39424 * 3 2 1 33 33 H 1.09003 * 109.46966 * 186.04433 * 5 4 3 34 34 H 1.08996 * 109.46993 * 306.04890 * 5 4 3 35 35 H 0.96999 * 119.99893 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46835 * 305.30628 * 14 4 3 37 37 H 1.08998 * 109.46957 * 65.31026 * 14 4 3 38 38 H 1.08003 * 119.92957 * 359.94872 * 16 15 14 39 39 H 1.08001 * 119.84907 * 179.97438 * 17 16 15 40 40 H 1.07992 * 119.93150 * 180.02562 * 18 17 16 41 41 H 1.08000 * 120.07370 * 180.02562 * 19 18 17 42 42 H 1.08003 * 122.07479 * 180.22343 * 23 22 21 43 43 H 1.08010 * 125.89026 * 179.76112 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5079 1.4430 -0.0579 5 6 4.0410 2.8012 0.1124 6 6 3.7370 3.2892 1.5055 7 1 3.2017 2.6536 2.1955 8 6 4.1432 4.5464 1.8996 9 7 4.7963 5.3197 1.0599 10 14 3.7670 5.1509 3.6265 11 1 4.8806 4.7777 4.5352 12 1 3.6140 6.6279 3.6117 13 1 2.5072 4.5277 4.1057 14 6 3.9854 0.8433 -1.3110 15 6 5.4887 0.7423 -1.2786 16 6 6.2596 1.6964 -1.9106 17 6 7.6396 1.6053 -1.8812 18 6 8.2561 0.5582 -1.2195 19 6 7.4968 -0.4022 -0.5837 20 6 6.1042 -0.3130 -0.6045 21 6 5.2842 -1.3359 0.0797 22 7 3.9867 -1.4282 0.0199 23 6 3.4263 -2.4068 0.6926 24 6 4.2608 -3.1974 1.3757 25 16 5.9054 -2.6206 1.1129 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3633 -1.0239 -0.0890 28 1 -0.3633 0.4348 0.9310 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 1.7122 1.9438 0.9107 32 1 1.6420 1.9686 -0.8677 33 1 5.1201 2.7899 -0.0412 34 1 3.5773 3.4674 -0.6151 35 1 5.0817 6.2043 1.3371 36 1 3.5567 -0.1524 -1.4238 37 1 3.6813 1.4672 -2.1514 38 1 5.7845 2.5158 -2.4296 39 1 8.2385 2.3545 -2.3778 40 1 9.3339 0.4930 -1.1999 41 1 7.9791 -1.2189 -0.0671 42 1 2.3573 -2.5611 0.6971 43 1 3.9761 -4.0435 1.9836 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140454197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:35 Heat of formation + Delta-G solvation = 65.715903 kcal Electronic energy + Delta-G solvation = -24727.400844 eV Core-core repulsion = 21477.969218 eV Total energy + Delta-G solvation = -3249.431626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02128 -39.63296 -38.33005 -34.94530 -34.17180 -33.15457 -32.13733 -30.07452 -29.24358 -27.40820 -26.20165 -25.56691 -23.27571 -23.11582 -22.59822 -21.09300 -20.21721 -19.03116 -18.53540 -17.32595 -16.88546 -16.59888 -16.14200 -16.03258 -15.87845 -15.54070 -15.26989 -15.07613 -14.67600 -14.39950 -13.99140 -13.84816 -13.80927 -13.59899 -13.32714 -13.17277 -12.85143 -12.72232 -12.55560 -12.42756 -12.28802 -12.14583 -11.99950 -11.85400 -11.46164 -11.31534 -11.09735 -10.68913 -10.57581 -10.21904 -10.06347 -9.66916 -8.98941 -8.80988 -8.18393 -6.26866 -0.57517 0.44113 0.47307 0.74655 0.89243 1.36257 1.37813 1.48573 2.14592 2.38983 2.88876 3.13348 3.22520 3.56059 3.92806 3.96689 4.13922 4.21885 4.27534 4.37389 4.43805 4.45474 4.58990 4.65841 4.68121 4.70060 4.77276 4.85849 4.97306 5.00473 5.07149 5.14320 5.23575 5.27882 5.34040 5.39694 5.53340 5.55671 5.56718 5.63118 5.68850 5.72957 6.03825 6.12777 6.49819 6.77274 6.90477 6.97594 7.41612 8.92324 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.005900 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.961908 B = 4744.483838 C = 5905.574136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C 0.070 3.930 4 N -0.515 5.515 5 C 0.208 3.792 6 C -0.518 4.518 7 H 0.053 0.947 8 C 0.004 3.996 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.267 1.267 14 C 0.086 3.914 15 C -0.044 4.044 16 C -0.130 4.130 17 C -0.107 4.107 18 C -0.118 4.118 19 C -0.105 4.105 20 C -0.033 4.033 21 C 0.107 3.893 22 N -0.453 5.453 23 C 0.023 3.977 24 C -0.243 4.243 25 S 0.085 5.915 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.002 0.998 33 H 0.017 0.983 34 H -0.053 1.053 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.004 0.996 38 H 0.109 0.891 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.190 0.810 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 -17.999 -3.392 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.058 4.058 4 N -0.239 5.239 5 C 0.082 3.918 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.200 1.200 12 H -0.205 1.205 13 H -0.192 1.192 14 C -0.041 4.041 15 C -0.048 4.048 16 C -0.148 4.148 17 C -0.126 4.126 18 C -0.136 4.136 19 C -0.125 4.125 20 C -0.037 4.037 21 C -0.168 4.168 22 N -0.166 5.166 23 C -0.128 4.128 24 C -0.381 4.381 25 S 0.340 5.660 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.020 0.980 33 H 0.035 0.965 34 H -0.036 1.036 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.022 0.978 38 H 0.127 0.873 39 H 0.163 0.837 40 H 0.180 0.820 41 H 0.162 0.838 42 H 0.207 0.793 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.192 -18.140 -2.923 18.649 hybrid contribution -1.414 1.600 0.110 2.138 sum 1.778 -16.540 -2.813 16.872 Atomic orbital electron populations 1.21756 0.95101 1.02288 1.01227 1.21532 0.95008 0.94498 1.02613 1.21968 0.87465 0.97786 0.98547 1.61998 1.08240 1.20921 1.32722 1.19408 0.94332 0.83737 0.94316 1.21423 1.35721 0.99723 0.98755 0.92837 1.25819 0.95130 0.96874 1.01543 1.70083 1.40049 1.09945 1.37053 0.85504 0.78799 0.77347 0.79714 1.19971 1.20500 1.19191 1.21383 0.91140 1.01658 0.89935 1.19958 0.95973 0.93452 0.95397 1.21163 0.95223 0.97765 1.00696 1.21524 0.93745 0.98609 0.98694 1.21336 1.01391 0.93644 0.97238 1.21367 0.91239 1.00283 0.99601 1.17872 0.92625 0.93885 0.99364 1.25855 0.91834 0.98675 1.00387 1.66694 1.07912 1.19896 1.22145 1.22091 1.02892 0.91251 0.96584 1.27344 0.93725 1.08078 1.08974 1.84584 1.10631 1.25302 1.45499 0.93404 0.90650 0.93434 0.91325 0.91713 0.93102 0.98007 0.96535 1.03583 0.92844 0.85839 0.97832 0.87286 0.83686 0.82050 0.83828 0.79313 0.77611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.91 71.98 0.71 -3.05 16 2 C -0.10 -3.16 4.29 30.60 0.13 -3.03 16 3 C 0.07 2.98 4.81 86.30 0.41 3.40 16 4 N -0.52 -23.92 4.20 -905.35 -3.80 -27.72 16 5 C 0.21 11.73 4.50 85.56 0.38 12.11 16 6 C -0.52 -30.92 8.41 25.60 0.22 -30.70 16 7 H 0.05 3.19 7.15 -2.91 -0.02 3.17 16 8 C 0.00 0.25 5.46 84.65 0.46 0.71 16 9 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 10 Si 0.96 46.12 29.54 68.60 2.03 48.14 16 11 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 14 C 0.09 3.50 3.99 85.56 0.34 3.84 16 15 C -0.04 -1.70 4.50 -19.61 -0.09 -1.79 16 16 C -0.13 -4.79 8.31 22.23 0.18 -4.61 16 17 C -0.11 -3.19 10.04 22.32 0.22 -2.97 16 18 C -0.12 -3.06 10.03 22.23 0.22 -2.84 16 19 C -0.10 -2.95 9.60 22.52 0.22 -2.74 16 20 C -0.03 -1.14 5.87 -20.09 -0.12 -1.26 16 21 C 0.11 3.41 7.24 87.48 0.63 4.04 16 22 N -0.45 -14.29 4.81 -189.84 -0.91 -15.20 16 23 C 0.02 0.56 9.75 83.75 0.82 1.38 16 24 C -0.24 -5.04 11.35 66.79 0.76 -4.28 16 25 S 0.08 2.04 22.43 -56.49 -1.27 0.77 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 2.14 5.80 -2.39 -0.01 2.13 16 30 H 0.06 2.11 5.95 -2.39 -0.01 2.10 16 31 H 0.05 2.39 6.69 -2.39 -0.02 2.38 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.02 0.99 5.88 -2.39 -0.01 0.98 16 34 H -0.05 -3.32 8.12 -2.39 -0.02 -3.34 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.12 4.61 3.86 -2.39 -0.01 4.61 16 37 H 0.00 0.15 8.02 -2.39 -0.02 0.13 16 38 H 0.11 4.20 8.04 -2.91 -0.02 4.18 16 39 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 40 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.14 3.22 7.33 -2.91 -0.02 3.20 16 42 H 0.19 3.72 7.44 -2.91 -0.02 3.70 16 43 H 0.21 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -71.20 352.99 2.85 -68.34 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.01 Total: 14.73 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 5.51 Total: -31.78 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.43 Total: -100.21 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.27 Total: 0.77 kcal Total: -71.20 2.85 -68.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140454197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.059 kcal (2) G-P(sol) polarization free energy of solvation -71.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds