Wall clock time and date at job start Tue Mar 31 2020 11:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47146 * 2 1 4 4 N 1.46892 * 109.47200 * 180.19508 * 3 2 1 5 5 C 1.46894 * 111.00364 * 61.33062 * 4 3 2 6 6 C 1.50702 * 109.46979 * 66.04843 * 5 4 3 7 7 H 1.08000 * 120.00266 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99959 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00498 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99961 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47027 * 60.00295 * 10 8 6 12 12 H 1.48500 * 109.46864 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47198 * 300.00274 * 10 8 6 14 14 C 1.46899 * 110.99841 * 297.37478 * 4 3 2 15 15 C 1.50697 * 109.47585 * 288.32857 * 14 4 3 16 16 C 1.33726 * 122.07134 * 95.40260 * 15 14 4 17 17 S 1.76257 * 108.21407 * 179.91225 * 16 15 14 18 18 C 1.76172 * 89.83936 * 0.29480 * 17 16 15 19 19 C 1.47864 * 125.47671 * 179.83229 * 18 17 16 20 20 C 1.39543 * 120.14670 * 179.71809 * 19 18 17 21 21 C 1.37965 * 119.85633 * 179.78800 * 20 19 18 22 22 C 1.38348 * 120.14377 * 0.46775 * 21 20 19 23 23 C 1.38350 * 120.28845 * 359.78603 * 22 21 20 24 24 C 1.37975 * 120.14222 * 359.97438 * 23 22 21 25 25 N 1.30233 * 109.05193 * 359.82753 * 18 17 16 26 26 H 1.08995 * 109.47543 * 60.00463 * 1 2 3 27 27 H 1.09001 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46971 * 300.00050 * 1 2 3 29 29 H 1.08995 * 109.47072 * 240.00037 * 2 1 3 30 30 H 1.09004 * 109.47649 * 119.99670 * 2 1 3 31 31 H 1.08996 * 109.47157 * 60.18833 * 3 2 1 32 32 H 1.09005 * 109.46444 * 300.19297 * 3 2 1 33 33 H 1.08996 * 109.47340 * 186.04229 * 5 4 3 34 34 H 1.08997 * 109.47422 * 306.04853 * 5 4 3 35 35 H 0.97000 * 120.00601 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.46948 * 48.33701 * 14 4 3 37 37 H 1.09008 * 109.46948 * 168.32701 * 14 4 3 38 38 H 1.08001 * 125.89279 * 0.02755 * 16 15 14 39 39 H 1.08005 * 120.07066 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.92761 * 180.23826 * 21 20 19 41 41 H 1.07996 * 119.85945 * 179.76793 * 22 21 20 42 42 H 1.07994 * 119.93104 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.07134 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 -0.0047 5 6 4.0315 0.7860 -1.2104 6 6 3.6692 1.6026 -2.4241 7 1 3.1065 2.5175 -2.3112 8 6 4.0551 1.1810 -3.6788 9 7 4.7389 0.0662 -3.8167 10 14 3.6053 2.1928 -5.1834 11 1 4.1974 3.5493 -5.0628 12 1 4.1338 1.5291 -6.4022 13 1 2.1278 2.3046 -5.2811 14 6 4.0392 0.8106 1.2107 15 6 3.8059 1.7176 2.3914 16 6 2.7435 1.5819 3.1920 17 16 2.8347 2.8200 4.4432 18 6 4.3333 3.4177 3.7355 19 6 5.1266 4.5580 4.2421 20 6 6.3047 4.9342 3.5957 21 6 7.0380 6.0019 4.0709 22 6 6.6127 6.6930 5.1914 23 6 5.4484 6.3218 5.8400 24 6 4.7033 5.2590 5.3721 25 7 4.6301 2.6937 2.6944 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6794 1.9554 0.8916 32 1 1.6738 1.9573 -0.8883 33 1 5.1160 0.7040 -1.1383 34 1 3.5970 -0.2096 -1.2993 35 1 5.0108 -0.2302 -4.6994 36 1 3.5321 -0.1399 1.3769 37 1 5.1087 0.6360 1.0924 38 1 1.9649 0.8402 3.0907 39 1 6.6398 4.3932 2.7231 40 1 7.9479 6.2965 3.5693 41 1 7.1922 7.5257 5.5617 42 1 5.1220 6.8651 6.7144 43 1 3.7944 4.9705 5.8790 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141214167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:01 Heat of formation + Delta-G solvation = 69.823512 kcal Electronic energy + Delta-G solvation = -23227.815099 eV Core-core repulsion = 19978.561592 eV Total energy + Delta-G solvation = -3249.253507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.92030 -38.95050 -37.12451 -32.84659 -32.73575 -31.74836 -31.13755 -29.61868 -27.35311 -26.49230 -24.99213 -23.82833 -22.80109 -22.12784 -21.56790 -19.64943 -18.91900 -17.82595 -16.80528 -16.18672 -15.76973 -15.32067 -14.97124 -14.76511 -14.53932 -14.31314 -14.23962 -13.62452 -13.52175 -13.39375 -13.06212 -12.92784 -12.69549 -12.25170 -11.91355 -11.57000 -11.39911 -11.31303 -11.22447 -10.96153 -10.92970 -10.85914 -10.64574 -10.49229 -9.94149 -9.78811 -9.75900 -9.52528 -9.23543 -9.14179 -9.07991 -8.40620 -8.11851 -7.15745 -6.00096 -4.00593 0.27534 1.23359 1.37434 1.52180 1.77486 3.01478 3.35286 3.39166 3.42755 3.73147 3.96727 4.45615 4.72298 4.76983 4.92048 5.01725 5.08992 5.26835 5.30228 5.35985 5.38319 5.48459 5.49969 5.58289 5.69099 5.81857 5.85818 5.90639 6.03678 6.10079 6.21912 6.27605 6.31300 6.35030 6.38013 6.44397 6.48777 6.71689 6.75443 6.92036 7.31889 7.40416 7.81566 7.94207 8.11525 8.21837 8.56075 9.06099 9.62993 11.10643 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003481 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.851532 B = 8042.876597 C = 9531.134799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.065 3.935 4 N -0.526 5.526 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.116 3.884 15 C 0.101 3.899 16 C -0.242 4.242 17 S 0.056 5.944 18 C 0.110 3.890 19 C -0.019 4.019 20 C -0.070 4.070 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.101 4.101 25 N -0.435 5.435 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.029 0.971 34 H 0.000 1.000 35 H 0.261 0.739 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.175 0.825 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 7.429 20.258 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.064 4.064 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.542 4.542 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.015 4.015 15 C -0.032 4.032 16 C -0.382 4.382 17 S 0.312 5.688 18 C -0.166 4.166 19 C -0.023 4.023 20 C -0.092 4.092 21 C -0.139 4.139 22 C -0.129 4.129 23 C -0.139 4.139 24 C -0.121 4.121 25 N -0.148 5.148 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.193 0.807 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.717 8.125 20.646 22.254 hybrid contribution -0.518 -0.977 -1.601 1.946 sum -2.235 7.148 19.045 20.465 Atomic orbital electron populations 1.21648 0.96431 1.00701 1.01245 1.22186 0.95596 1.00395 1.02149 1.22079 0.88487 0.94426 1.01394 1.62244 1.06300 1.54794 1.01545 1.19797 0.95349 0.92905 0.85204 1.21084 1.34707 1.08110 0.90268 0.92062 1.24951 0.95355 0.95192 0.98982 1.69939 1.38535 1.21987 1.23452 0.86594 0.78671 0.80374 0.81979 1.20192 1.21392 1.20335 1.20699 1.01486 0.91905 0.87377 1.20259 0.90262 0.94949 0.97732 1.26791 1.05069 1.06005 1.00291 1.84608 1.24991 1.27863 1.31362 1.25803 0.95862 0.99703 0.95219 1.17866 0.94934 0.93340 0.96171 1.21406 0.92717 0.95871 0.99164 1.21181 1.00236 0.95732 0.96764 1.21298 0.96424 0.99518 0.95628 1.20994 0.95416 0.97171 1.00365 1.21149 0.99818 0.95849 0.95326 1.66329 1.30468 1.05144 1.12838 0.92642 0.93552 0.93637 0.90359 0.93157 0.93190 0.90038 0.95252 0.98212 0.92922 0.93367 0.89681 0.80746 0.84285 0.85346 0.85791 0.85556 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.16 -2.85 5.30 -26.73 -0.14 -2.99 16 3 C 0.06 1.25 4.97 -3.83 -0.02 1.23 16 4 N -0.53 -11.44 4.65 -237.52 -1.10 -12.54 16 5 C 0.19 4.94 4.50 -4.98 -0.02 4.92 16 6 C -0.50 -14.10 8.50 -34.44 -0.29 -14.40 16 7 H 0.06 1.72 7.11 -52.49 -0.37 1.35 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 10 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.12 2.17 5.25 -4.98 -0.03 2.14 16 15 C 0.10 1.72 5.70 -84.40 -0.48 1.24 16 16 C -0.24 -3.46 9.88 29.15 0.29 -3.18 16 17 S 0.06 0.70 22.40 -107.50 -2.41 -1.70 16 18 C 0.11 1.64 7.35 -14.29 -0.11 1.53 16 19 C -0.02 -0.25 5.87 -104.98 -0.62 -0.87 16 20 C -0.07 -0.89 9.68 -39.19 -0.38 -1.26 16 21 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 22 C -0.11 -0.94 10.04 -39.50 -0.40 -1.34 16 23 C -0.12 -1.06 10.03 -39.64 -0.40 -1.45 16 24 C -0.10 -1.06 9.61 -39.19 -0.38 -1.43 16 25 N -0.43 -7.65 10.11 -7.55 -0.08 -7.72 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.60 6.29 -51.93 -0.33 1.27 16 30 H 0.05 0.80 6.24 -51.93 -0.32 0.48 16 31 H 0.05 0.89 6.54 -51.93 -0.34 0.55 16 32 H 0.08 1.75 6.82 -51.93 -0.35 1.39 16 33 H 0.03 0.82 7.86 -51.93 -0.41 0.41 16 34 H 0.00 0.01 6.04 -51.93 -0.31 -0.31 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.05 0.83 5.82 -51.93 -0.30 0.52 16 37 H 0.08 1.66 7.82 -51.92 -0.41 1.25 16 38 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.14 1.90 7.82 -52.48 -0.41 1.49 16 40 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 1.11 7.30 -52.49 -0.38 0.73 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -30.89 364.02 -11.52 -42.41 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.04 Total: 0.82 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -3.09 Total: -17.66 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.44 Total: -46.15 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.41 Total: -1.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.89 -11.52 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141214167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.234 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds