Wall clock time and date at job start Tue Mar 31 2020 11:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47146 * 2 1 4 4 N 1.46892 * 109.47200 * 180.19508 * 3 2 1 5 5 C 1.46894 * 111.00364 * 61.33062 * 4 3 2 6 6 C 1.50702 * 109.46979 * 66.04843 * 5 4 3 7 7 H 1.08000 * 120.00266 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99959 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00498 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99961 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47027 * 60.00295 * 10 8 6 12 12 H 1.48500 * 109.46864 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47198 * 300.00274 * 10 8 6 14 14 C 1.46899 * 110.99841 * 297.37478 * 4 3 2 15 15 C 1.50697 * 109.47585 * 288.32857 * 14 4 3 16 16 C 1.33726 * 122.07134 * 95.40260 * 15 14 4 17 17 S 1.76257 * 108.21407 * 179.91225 * 16 15 14 18 18 C 1.76172 * 89.83936 * 0.29480 * 17 16 15 19 19 C 1.47864 * 125.47671 * 179.83229 * 18 17 16 20 20 C 1.39543 * 120.14670 * 179.71809 * 19 18 17 21 21 C 1.37965 * 119.85633 * 179.78800 * 20 19 18 22 22 C 1.38348 * 120.14377 * 0.46775 * 21 20 19 23 23 C 1.38350 * 120.28845 * 359.78603 * 22 21 20 24 24 C 1.37975 * 120.14222 * 359.97438 * 23 22 21 25 25 N 1.30233 * 109.05193 * 359.82753 * 18 17 16 26 26 H 1.08995 * 109.47543 * 60.00463 * 1 2 3 27 27 H 1.09001 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46971 * 300.00050 * 1 2 3 29 29 H 1.08995 * 109.47072 * 240.00037 * 2 1 3 30 30 H 1.09004 * 109.47649 * 119.99670 * 2 1 3 31 31 H 1.08996 * 109.47157 * 60.18833 * 3 2 1 32 32 H 1.09005 * 109.46444 * 300.19297 * 3 2 1 33 33 H 1.08996 * 109.47340 * 186.04229 * 5 4 3 34 34 H 1.08997 * 109.47422 * 306.04853 * 5 4 3 35 35 H 0.97000 * 120.00601 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.46948 * 48.33701 * 14 4 3 37 37 H 1.09008 * 109.46948 * 168.32701 * 14 4 3 38 38 H 1.08001 * 125.89279 * 0.02755 * 16 15 14 39 39 H 1.08005 * 120.07066 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.92761 * 180.23826 * 21 20 19 41 41 H 1.07996 * 119.85945 * 179.76793 * 22 21 20 42 42 H 1.07994 * 119.93104 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.07134 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 -0.0047 5 6 4.0315 0.7860 -1.2104 6 6 3.6692 1.6026 -2.4241 7 1 3.1065 2.5175 -2.3112 8 6 4.0551 1.1810 -3.6788 9 7 4.7389 0.0662 -3.8167 10 14 3.6053 2.1928 -5.1834 11 1 4.1974 3.5493 -5.0628 12 1 4.1338 1.5291 -6.4022 13 1 2.1278 2.3046 -5.2811 14 6 4.0392 0.8106 1.2107 15 6 3.8059 1.7176 2.3914 16 6 2.7435 1.5819 3.1920 17 16 2.8347 2.8200 4.4432 18 6 4.3333 3.4177 3.7355 19 6 5.1266 4.5580 4.2421 20 6 6.3047 4.9342 3.5957 21 6 7.0380 6.0019 4.0709 22 6 6.6127 6.6930 5.1914 23 6 5.4484 6.3218 5.8400 24 6 4.7033 5.2590 5.3721 25 7 4.6301 2.6937 2.6944 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6794 1.9554 0.8916 32 1 1.6738 1.9573 -0.8883 33 1 5.1160 0.7040 -1.1383 34 1 3.5970 -0.2096 -1.2993 35 1 5.0108 -0.2302 -4.6994 36 1 3.5321 -0.1399 1.3769 37 1 5.1087 0.6360 1.0924 38 1 1.9649 0.8402 3.0907 39 1 6.6398 4.3932 2.7231 40 1 7.9479 6.2965 3.5693 41 1 7.1922 7.5257 5.5617 42 1 5.1220 6.8651 6.7144 43 1 3.7944 4.9705 5.8790 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141214167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:00 Heat of formation + Delta-G solvation = 51.911508 kcal Electronic energy + Delta-G solvation = -23228.591821 eV Core-core repulsion = 19978.561592 eV Total energy + Delta-G solvation = -3250.030230 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07675 -39.87466 -38.67815 -34.88654 -33.90077 -33.10719 -31.92123 -30.86546 -29.09449 -27.98900 -26.20165 -25.44767 -23.75373 -23.60660 -22.62851 -21.15307 -20.10572 -18.91805 -18.33820 -17.76238 -17.00040 -16.66106 -16.48512 -16.02010 -15.77468 -15.67214 -15.50844 -14.94439 -14.78770 -14.38043 -14.26211 -14.12960 -13.97873 -13.63546 -13.38163 -13.07301 -12.87487 -12.68979 -12.61899 -12.39572 -12.36085 -12.28572 -12.16918 -12.00504 -11.76181 -11.38540 -11.27508 -10.80069 -10.64548 -10.59580 -10.17743 -9.91181 -9.13329 -8.88643 -8.19537 -6.28732 -0.72561 0.31234 0.45362 0.57987 0.64976 1.38420 1.41806 1.49479 1.85103 2.40028 2.89447 2.94949 3.12557 3.46637 3.79053 3.99745 4.06555 4.09095 4.12606 4.20413 4.27715 4.33366 4.44307 4.48229 4.51669 4.57168 4.69927 4.73532 4.82773 4.91578 5.03511 5.07378 5.09248 5.13150 5.16706 5.30803 5.41363 5.48893 5.49412 5.52901 5.57457 5.65818 6.00582 6.05796 6.35994 6.60998 6.83599 6.86223 7.39867 8.90884 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003481 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.851532 B = 8042.876597 C = 9531.134799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.155 4.155 3 C 0.071 3.929 4 N -0.541 5.541 5 C 0.211 3.789 6 C -0.519 4.519 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.123 3.877 15 C 0.075 3.925 16 C -0.242 4.242 17 S 0.131 5.869 18 C 0.095 3.905 19 C -0.049 4.049 20 C -0.095 4.095 21 C -0.126 4.126 22 C -0.101 4.101 23 C -0.116 4.116 24 C -0.102 4.102 25 N -0.482 5.482 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.055 0.945 33 H -0.006 1.006 34 H -0.016 1.016 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.198 0.802 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 9.432 22.810 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C -0.057 4.057 4 N -0.264 5.264 5 C 0.085 3.915 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.191 1.191 14 C -0.008 4.008 15 C -0.057 4.057 16 C -0.382 4.382 17 S 0.388 5.612 18 C -0.180 4.180 19 C -0.052 4.052 20 C -0.117 4.117 21 C -0.144 4.144 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.123 4.123 25 N -0.196 5.196 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.012 0.988 34 H 0.002 0.998 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.215 0.785 39 H 0.129 0.871 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.180 0.820 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.501 10.133 23.225 25.580 hybrid contribution 0.083 -1.510 -2.223 2.688 sum -3.419 8.623 21.003 22.960 Atomic orbital electron populations 1.21606 0.93699 1.02045 1.02044 1.22056 0.97919 0.98432 1.01031 1.22023 0.86849 0.95806 1.01046 1.62094 1.08038 1.54981 1.01285 1.19382 0.93083 0.92233 0.86836 1.21358 1.34727 1.08115 0.91525 0.92622 1.25828 0.95087 0.96284 1.02125 1.70066 1.39440 1.23531 1.24296 0.85519 0.78887 0.78651 0.78067 1.19790 1.20611 1.19142 1.20569 1.00062 0.93134 0.87010 1.19944 0.91933 0.95716 0.98149 1.27067 1.04321 1.06651 1.00149 1.84235 1.22363 1.25572 1.29065 1.26228 0.97233 0.99723 0.94796 1.18070 0.95453 0.93939 0.97785 1.21358 0.93858 0.97299 0.99193 1.21421 1.00521 0.94971 0.97498 1.21726 0.96387 0.99532 0.94312 1.21446 0.94749 0.96228 1.00912 1.21377 1.00547 0.96007 0.94340 1.66270 1.32018 1.06376 1.14911 0.93498 0.91960 0.91167 0.94198 0.91495 0.91032 0.92632 0.98787 0.99812 0.92712 0.91837 0.92039 0.78517 0.87060 0.83824 0.82420 0.82038 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.16 -5.39 5.30 30.59 0.16 -5.23 16 3 C 0.07 2.79 4.97 86.31 0.43 3.22 16 4 N -0.54 -24.77 4.65 -905.39 -4.21 -28.98 16 5 C 0.21 11.57 4.50 85.56 0.38 11.95 16 6 C -0.52 -30.42 8.50 25.60 0.22 -30.20 16 7 H 0.06 3.25 7.11 -2.91 -0.02 3.23 16 8 C 0.00 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 10 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.12 4.82 5.25 85.56 0.45 5.27 16 15 C 0.08 2.62 5.70 41.61 0.24 2.85 16 16 C -0.24 -6.56 9.88 66.79 0.66 -5.90 16 17 S 0.13 3.00 22.40 -56.49 -1.27 1.74 16 18 C 0.09 2.84 7.35 87.48 0.64 3.49 16 19 C -0.05 -1.26 5.87 -20.10 -0.12 -1.38 16 20 C -0.10 -2.51 9.68 22.52 0.22 -2.29 16 21 C -0.13 -2.41 10.03 22.23 0.22 -2.18 16 22 C -0.10 -1.41 10.04 22.32 0.22 -1.19 16 23 C -0.12 -1.60 10.03 22.23 0.22 -1.37 16 24 C -0.10 -1.91 9.61 22.52 0.22 -1.70 16 25 N -0.48 -17.70 10.11 -177.80 -1.80 -19.50 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.04 1.69 6.29 -2.39 -0.02 1.68 16 30 H 0.07 2.08 6.24 -2.38 -0.01 2.06 16 31 H 0.07 2.50 6.54 -2.39 -0.02 2.48 16 32 H 0.06 2.45 6.82 -2.38 -0.02 2.44 16 33 H -0.01 -0.36 7.86 -2.39 -0.02 -0.38 16 34 H -0.02 -0.90 6.04 -2.39 -0.01 -0.91 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.06 2.23 5.82 -2.39 -0.01 2.22 16 37 H 0.06 2.63 7.82 -2.38 -0.02 2.61 16 38 H 0.20 4.27 8.06 -2.91 -0.02 4.24 16 39 H 0.11 3.43 7.82 -2.91 -0.02 3.41 16 40 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 43 H 0.14 2.06 7.30 -2.91 -0.02 2.03 16 Total: -1.00 -71.47 364.02 1.39 -70.08 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.01 Total: 12.85 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 5.35 Total: -26.92 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -5.72 Total: -105.39 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.27 Total: 1.74 kcal Total: -71.47 1.39 -70.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141214167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.990 kcal (2) G-P(sol) polarization free energy of solvation -71.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds