Wall clock time and date at job start Tue Mar 31 2020 10:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99718 * 2 1 4 4 C 1.38776 * 120.03977 * 359.97438 * 3 2 1 5 5 C 1.38136 * 119.98919 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.08277 * 359.97438 * 5 4 3 7 7 C 1.38470 * 120.08351 * 359.74727 * 6 5 4 8 8 F 1.35104 * 120.00014 * 180.25453 * 7 6 5 9 9 C 1.38386 * 120.00826 * 0.50500 * 7 6 5 10 10 C 1.50694 * 120.04346 * 179.77204 * 9 7 6 11 11 N 1.46505 * 109.47445 * 269.72256 * 10 9 7 12 12 C 1.38369 * 120.00410 * 179.97438 * 11 10 9 13 13 C 1.39710 * 119.42824 * 0.02945 * 12 11 10 14 14 C 1.36560 * 119.49182 * 179.97438 * 13 12 11 15 15 C 1.41324 * 118.41069 * 359.97175 * 14 13 12 16 16 C 1.41201 * 120.57145 * 180.27662 * 15 14 13 17 17 H 1.07995 * 119.99577 * 154.60356 * 16 15 14 18 18 C 1.39873 * 120.00087 * 334.60342 * 16 15 14 19 19 N 1.30906 * 119.99751 * 344.02397 * 18 16 15 20 20 Si 1.86796 * 119.99856 * 164.01954 * 18 16 15 21 21 H 1.48506 * 109.46858 * 90.00065 * 20 18 16 22 22 H 1.48499 * 109.47151 * 209.99796 * 20 18 16 23 23 H 1.48501 * 109.47297 * 330.00535 * 20 18 16 24 24 C 1.40752 * 118.85462 * 0.02562 * 15 14 13 25 25 C 1.50708 * 119.81329 * 179.97438 * 24 15 14 26 26 N 1.31477 * 120.37306 * 0.02562 * 24 15 14 27 27 H 1.09003 * 109.46835 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47841 * 299.99773 * 1 2 3 29 29 H 1.08997 * 109.47439 * 60.00727 * 1 2 3 30 30 H 1.07997 * 120.00198 * 0.04277 * 4 3 2 31 31 H 1.07998 * 119.95433 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.95623 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.47544 * 149.72130 * 10 9 7 34 34 H 1.09000 * 109.47344 * 29.72271 * 10 9 7 35 35 H 0.96994 * 119.99203 * 0.02562 * 11 10 9 36 36 H 1.08000 * 120.25242 * 359.94717 * 13 12 11 37 37 H 1.07998 * 120.79601 * 180.02562 * 14 13 12 38 38 H 0.96996 * 119.99679 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.46854 * 89.99788 * 25 24 15 40 40 H 1.08999 * 109.47046 * 209.99346 * 25 24 15 41 41 H 1.08996 * 109.46979 * 329.99545 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2908 2.3753 -0.0005 5 6 1.9190 3.6056 -0.0011 6 6 3.2996 3.6788 -0.0005 7 6 4.0561 2.5190 0.0058 8 9 5.4051 2.5926 0.0115 9 6 3.4306 1.2846 0.0011 10 6 4.2532 0.0220 0.0028 11 7 4.5205 -0.3887 -1.3779 12 6 5.2636 -1.5285 -1.6292 13 6 5.7529 -2.2792 -0.5572 14 6 6.4860 -3.4046 -0.8038 15 6 6.7238 -3.7712 -2.1478 16 6 7.4712 -4.9292 -2.4549 17 1 7.3208 -5.4346 -3.3973 18 6 8.4061 -5.4216 -1.5385 19 7 8.8193 -4.6641 -0.5540 20 14 9.0650 -7.1601 -1.7193 21 1 10.2805 -7.1426 -2.5723 22 1 9.4081 -7.7013 -0.3797 23 1 8.0302 -8.0185 -2.3499 24 6 6.1984 -2.9649 -3.1749 25 6 6.4393 -3.3354 -4.6157 26 7 5.4993 -1.8900 -2.8845 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 0.2123 2.3195 -0.0003 31 1 1.3308 4.5113 -0.0011 32 1 3.7886 4.6417 -0.0014 33 1 3.7057 -0.7678 0.5173 34 1 5.1970 0.2039 0.5168 35 1 4.1770 0.1388 -2.1158 36 1 5.5531 -1.9715 0.4586 37 1 6.8741 -4.0008 0.0089 38 1 9.4674 -5.0057 0.0817 39 1 5.6364 -3.9857 -4.9628 40 1 6.4634 -2.4313 -5.2242 41 1 7.3925 -3.8570 -4.7022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156750423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:16 Heat of formation + Delta-G solvation = -24.353348 kcal Electronic energy + Delta-G solvation = -25440.991083 eV Core-core repulsion = 21621.440585 eV Total energy + Delta-G solvation = -3819.550498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.95181 -40.40522 -38.55242 -37.46144 -35.45690 -33.64519 -31.87872 -30.79920 -30.05852 -29.66752 -27.59562 -26.80675 -25.75173 -23.95973 -22.44270 -21.89041 -21.12954 -19.82230 -18.52009 -17.19342 -17.13985 -16.70669 -16.13807 -16.07306 -15.61422 -15.46168 -15.08430 -14.85847 -14.75587 -13.74033 -13.64437 -13.55724 -13.24469 -12.98950 -12.75216 -12.53773 -12.49725 -12.13440 -11.88784 -11.73685 -11.50596 -11.32192 -11.25292 -11.09721 -11.07893 -10.93719 -10.74763 -10.48197 -9.63381 -9.28285 -8.96038 -8.53722 -8.48762 -8.04856 -7.90367 -6.71991 -6.48098 -4.09095 0.88436 1.06683 2.82368 2.95635 3.05203 3.13224 3.18124 3.30517 3.37442 4.02162 4.18708 4.37957 4.49376 4.63334 4.74360 4.79893 4.83534 4.92607 5.06145 5.13640 5.29014 5.62580 5.66545 5.78035 5.87867 5.96417 6.06000 6.13558 6.23274 6.47342 6.52964 6.60656 6.64202 6.75891 6.88204 7.10859 7.13877 7.30790 7.48749 7.56827 7.84242 7.99943 8.36192 8.53533 8.75716 8.94060 9.02691 9.84027 10.32861 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002978 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.193240 B = 9400.994980 C = 9669.184448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.299 6.299 3 C 0.175 3.825 4 C -0.226 4.226 5 C -0.049 4.049 6 C -0.198 4.198 7 C 0.157 3.843 8 F -0.125 7.125 9 C -0.168 4.168 10 C 0.195 3.805 11 N -0.736 5.736 12 C 0.290 3.710 13 C -0.208 4.208 14 C -0.090 4.090 15 C 0.033 3.967 16 C -0.454 4.454 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.808 5.808 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.262 1.262 24 C 0.037 3.963 25 C -0.070 4.070 26 N -0.522 5.522 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.388 0.612 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.278 0.722 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 12.487 4.108 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.211 6.211 3 C 0.128 3.872 4 C -0.245 4.245 5 C -0.067 4.067 6 C -0.217 4.217 7 C 0.137 3.863 8 F -0.103 7.103 9 C -0.170 4.170 10 C 0.069 3.931 11 N -0.375 5.375 12 C 0.058 3.942 13 C -0.232 4.232 14 C -0.117 4.117 15 C 0.028 3.972 16 C -0.485 4.485 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.435 5.435 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.101 4.101 25 C -0.127 4.127 26 N -0.238 5.238 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.221 0.779 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.209 12.719 3.823 19.450 hybrid contribution 0.575 -0.801 0.580 1.144 sum -13.633 11.919 4.404 18.636 Atomic orbital electron populations 1.23126 0.78095 1.04408 1.01239 1.86214 1.21430 1.25913 1.87570 1.18530 0.90854 0.84724 0.93114 1.21271 1.00423 0.92056 1.10750 1.20746 0.93449 0.97365 0.95134 1.21034 0.94440 0.97540 1.08668 1.17252 0.77244 0.93056 0.98741 1.91556 1.28587 1.96989 1.93200 1.19298 0.91794 0.95216 1.10707 1.19588 0.96729 0.91065 0.85672 1.43517 1.61451 1.28027 1.04551 1.17648 0.97673 0.89680 0.89219 1.20787 1.06129 0.99636 0.96680 1.21273 0.96751 0.95981 0.97690 1.18141 0.93954 0.93873 0.91277 1.19313 1.17691 1.08556 1.02967 0.90311 1.25849 0.95403 0.98659 0.94350 1.69825 1.24904 1.35789 1.12968 0.86361 0.79554 0.82716 0.78337 1.19669 1.20339 1.18618 1.20726 1.02258 0.92046 0.95114 1.20244 1.00966 0.99599 0.91909 1.66291 1.18904 1.18793 1.19859 0.87896 0.92563 0.92460 0.84801 0.84786 0.84551 0.91508 0.92216 0.77929 0.88605 0.85550 0.91166 0.93494 0.93490 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -3.80 9.54 -19.44 -0.19 -3.99 16 3 C 0.17 2.18 6.66 -39.22 -0.26 1.92 16 4 C -0.23 -2.14 9.04 -39.42 -0.36 -2.49 16 5 C -0.05 -0.42 10.04 -39.61 -0.40 -0.82 16 6 C -0.20 -2.05 10.02 -39.49 -0.40 -2.44 16 7 C 0.16 2.11 7.24 -39.44 -0.29 1.83 16 8 F -0.13 -1.91 16.47 2.25 0.04 -1.88 16 9 C -0.17 -2.40 5.27 -104.41 -0.55 -2.95 16 10 C 0.19 3.33 4.60 -5.19 -0.02 3.31 16 11 N -0.74 -14.82 5.70 -61.53 -0.35 -15.17 16 12 C 0.29 7.03 7.64 -155.13 -1.19 5.85 16 13 C -0.21 -5.13 9.24 -39.64 -0.37 -5.49 16 14 C -0.09 -2.42 8.73 -39.02 -0.34 -2.76 16 15 C 0.03 0.89 5.58 -106.65 -0.59 0.30 16 16 C -0.45 -12.10 8.14 -37.85 -0.31 -12.41 16 17 H 0.08 2.00 6.87 -52.49 -0.36 1.64 16 18 C 0.07 1.86 5.19 -17.33 -0.09 1.77 16 19 N -0.81 -21.29 10.94 55.54 0.61 -20.69 16 20 Si 0.91 19.00 29.59 -169.99 -5.03 13.97 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 24 C 0.04 0.97 6.86 -81.79 -0.56 0.41 16 25 C -0.07 -1.54 9.57 36.01 0.34 -1.19 16 26 N -0.52 -13.41 10.29 -8.05 -0.08 -13.49 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.07 1.16 7.29 -51.93 -0.38 0.78 16 34 H 0.06 1.06 7.39 -51.93 -0.38 0.68 16 35 H 0.39 7.56 8.58 -40.82 -0.35 7.21 16 36 H 0.10 2.12 6.64 -52.49 -0.35 1.77 16 37 H 0.13 3.44 6.25 -52.49 -0.33 3.11 16 38 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.48 6.77 -51.93 -0.35 1.13 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -31.02 347.72 -9.02 -40.04 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.88 Total: 9.95 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -4.38 Total: -13.99 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.17 Total: -49.35 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.19 Total: -3.99 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.02 -9.02 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156750423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.687 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds