Wall clock time and date at job start Tue Mar 31 2020 11:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38099 * 119.58044 * 2 1 4 4 C 1.38779 * 119.28487 * 180.24971 * 3 2 1 5 5 C 1.50705 * 120.75590 * 179.74962 * 4 3 2 6 6 C 1.38421 * 118.48975 * 359.47765 * 4 3 2 7 7 C 1.50693 * 120.44927 * 180.23308 * 6 4 3 8 8 N 1.46500 * 109.47626 * 89.99638 * 7 6 4 9 9 C 1.38801 * 120.00258 * 180.02562 * 8 7 6 10 10 C 1.38635 * 120.21734 * 359.97438 * 9 8 7 11 11 C 1.38223 * 120.21434 * 179.97438 * 10 9 8 12 12 C 1.38790 * 120.66696 * 359.97438 * 11 10 9 13 13 C 1.37742 * 120.42580 * 0.05016 * 12 11 10 14 14 F 1.35096 * 120.11122 * 179.97438 * 13 12 11 15 15 C 1.40992 * 119.76486 * 359.69710 * 13 12 11 16 16 C 1.40996 * 120.31909 * 180.29950 * 15 13 12 17 17 H 1.07997 * 119.99920 * 216.78462 * 16 15 13 18 18 C 1.39918 * 119.99734 * 36.78950 * 16 15 13 19 19 N 1.30907 * 120.00055 * 19.58564 * 18 16 15 20 20 Si 1.86799 * 119.99583 * 199.58991 * 18 16 15 21 21 H 1.48488 * 109.47418 * 89.99870 * 20 18 16 22 22 H 1.48503 * 109.46851 * 210.00037 * 20 18 16 23 23 H 1.48504 * 109.47007 * 329.99509 * 20 18 16 24 24 C 1.38883 * 119.10988 * 0.24975 * 6 4 3 25 25 O 1.35672 * 119.68480 * 179.97438 * 24 6 4 26 26 N 1.31938 * 119.58729 * 179.71478 * 2 1 3 27 27 H 1.08999 * 109.47603 * 270.27902 * 1 2 3 28 28 H 1.09002 * 109.47346 * 30.28716 * 1 2 3 29 29 H 1.09005 * 109.46754 * 150.27958 * 1 2 3 30 30 H 1.08001 * 120.35581 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.46949 * 269.71908 * 5 4 3 32 32 H 1.09003 * 109.46854 * 149.71687 * 5 4 3 33 33 H 1.08993 * 109.46859 * 29.72295 * 5 4 3 34 34 H 1.09002 * 109.47614 * 210.00257 * 7 6 4 35 35 H 1.09006 * 109.47118 * 329.99632 * 7 6 4 36 36 H 0.97000 * 119.99483 * 0.02562 * 8 7 6 37 37 H 1.07995 * 119.88907 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.66256 * 180.02562 * 11 10 9 39 39 H 1.07997 * 119.78151 * 180.02562 * 12 11 10 40 40 H 0.97000 * 119.99729 * 179.97438 * 19 18 16 41 41 H 0.96704 * 113.99740 * 89.99881 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2010 0.0000 4 6 3.5765 1.1938 -0.0053 5 6 4.3538 2.4849 -0.0111 6 6 4.2305 -0.0261 0.0007 7 6 5.7362 -0.0854 0.0006 8 7 6.2247 -0.0975 1.3818 9 6 7.5884 -0.1493 1.6353 10 6 8.4922 -0.1903 0.5849 11 6 9.8502 -0.2414 0.8374 12 6 10.3281 -0.2519 2.1404 13 6 9.4540 -0.2125 3.2042 14 9 9.9261 -0.2236 4.4700 15 6 8.0653 -0.1548 2.9674 16 6 7.1604 -0.1077 4.0477 17 1 6.2163 -0.6283 3.9843 18 6 7.4856 0.6136 5.2017 19 7 8.4113 1.5380 5.1567 20 14 6.5988 0.2571 6.8066 21 1 7.3341 -0.7931 7.5558 22 1 6.5363 1.4958 7.6233 23 1 5.2209 -0.2146 6.5166 24 6 3.4803 -1.1949 0.0064 25 8 4.1093 -2.3970 0.0118 26 7 2.1584 -1.1473 0.0057 27 1 -0.3634 0.0050 1.0276 28 1 -0.3634 0.8874 -0.5183 29 1 -0.3633 -0.8925 -0.5095 30 1 1.6477 2.1357 -0.0004 31 1 4.5416 2.7913 -1.0402 32 1 5.3034 2.3396 0.5038 33 1 3.7786 3.2576 0.4989 34 1 6.0643 -0.9915 -0.5088 35 1 6.1342 0.7871 -0.5178 36 1 5.5950 -0.0693 2.1191 37 1 8.1341 -0.1814 -0.4339 38 1 10.5465 -0.2726 0.0123 39 1 11.3921 -0.2916 2.3212 40 1 8.6365 2.0383 5.9566 41 1 4.2920 -2.7413 0.8968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162610550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:37 Heat of formation + Delta-G solvation = -31.985506 kcal Electronic energy + Delta-G solvation = -26088.467532 eV Core-core repulsion = 22268.586079 eV Total energy + Delta-G solvation = -3819.881453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.84691 -40.76540 -37.91600 -37.22068 -35.43309 -33.51934 -33.38283 -31.76204 -29.97890 -28.97089 -27.74142 -27.14406 -25.15888 -24.41171 -22.62093 -21.21581 -20.68964 -20.01911 -18.28946 -17.37569 -17.18209 -16.69284 -15.77280 -15.59935 -15.09597 -14.66119 -14.31723 -14.16399 -13.85689 -13.79633 -13.62122 -13.53253 -13.21292 -13.04180 -12.92566 -12.68557 -12.44903 -12.33077 -11.95403 -11.70963 -11.54894 -11.45083 -11.27533 -11.20545 -11.17521 -10.74412 -10.61905 -10.13720 -9.54179 -9.44423 -9.41168 -9.00481 -8.90369 -8.71212 -7.14893 -6.72884 -6.39659 -4.23859 0.91636 1.15040 2.76352 2.91156 3.11865 3.13710 3.18897 3.36437 3.73217 4.01611 4.41537 4.53137 4.57212 4.70509 4.88471 4.91790 5.19890 5.28687 5.34275 5.40912 5.45174 5.54224 5.57856 5.75799 5.83239 5.94658 6.05626 6.08696 6.10231 6.14687 6.35385 6.42043 6.51635 6.53132 6.98008 7.20962 7.34385 7.35032 7.52573 7.62664 7.83837 7.91557 8.07820 8.33148 8.52195 8.69465 8.90314 8.99646 10.32230 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.004384 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.275584 B = 6385.186382 C = 7480.934878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.151 3.849 3 C -0.190 4.190 4 C -0.004 4.004 5 C -0.125 4.125 6 C -0.169 4.169 7 C 0.182 3.818 8 N -0.739 5.739 9 C 0.149 3.851 10 C -0.191 4.191 11 C -0.161 4.161 12 C -0.180 4.180 13 C 0.062 3.938 14 F -0.143 7.143 15 C 0.042 3.958 16 C -0.477 4.477 17 H 0.074 0.926 18 C 0.082 3.918 19 N -0.786 5.786 20 Si 0.901 3.099 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.266 1.266 24 C 0.336 3.664 25 O -0.479 6.479 26 N -0.513 5.513 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.397 0.603 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.279 0.721 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 1.057 -8.280 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.014 3.986 3 C -0.210 4.210 4 C -0.012 4.012 5 C -0.181 4.181 6 C -0.173 4.173 7 C 0.056 3.944 8 N -0.373 5.373 9 C 0.049 3.951 10 C -0.215 4.215 11 C -0.181 4.181 12 C -0.201 4.201 13 C 0.040 3.960 14 F -0.122 7.122 15 C 0.037 3.963 16 C -0.508 4.508 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.411 5.411 20 Si 0.727 3.273 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.191 1.191 24 C 0.156 3.844 25 O -0.286 6.286 26 N -0.233 5.233 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.232 0.768 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -11.449 0.485 -8.881 14.498 hybrid contribution 0.080 0.616 1.771 1.877 sum -11.369 1.101 -7.110 13.454 Atomic orbital electron populations 1.20730 0.88686 1.03434 1.03206 1.20967 0.96632 0.87273 0.93753 1.21820 0.94049 0.99287 1.05800 1.20206 0.93507 0.95231 0.92286 1.20946 1.01154 0.93021 1.02993 1.20897 0.97724 0.92530 1.06134 1.19794 0.86604 1.01545 0.86431 1.43946 1.04171 1.84861 1.04371 1.17598 0.82872 1.01993 0.92611 1.20068 0.92970 1.12437 0.95978 1.19945 0.94179 1.09419 0.94562 1.20440 0.97595 1.09408 0.92665 1.17460 0.91802 1.08752 0.77982 1.91316 1.88555 1.93892 1.38403 1.17052 0.91111 0.97350 0.90832 1.18860 1.03866 1.29370 0.98674 0.90833 1.25633 0.94696 0.93252 1.00043 1.69790 1.26054 1.14960 1.30329 0.86425 0.80258 0.78696 0.81967 1.19414 1.20592 1.19078 1.18936 0.86412 0.85179 0.93854 1.84696 1.76427 1.33279 1.34226 1.66995 1.09682 1.30658 1.15940 0.90255 0.90587 0.90464 0.84581 0.90359 0.89394 0.90874 0.91618 0.92252 0.76806 0.88707 0.88560 0.88526 0.91016 0.73692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.17 36.00 0.37 -0.52 16 2 C 0.15 1.86 6.78 -82.60 -0.56 1.30 16 3 C -0.19 -2.17 9.44 -39.43 -0.37 -2.54 16 4 C 0.00 -0.05 5.91 -104.35 -0.62 -0.67 16 5 C -0.12 -1.42 9.28 36.01 0.33 -1.09 16 6 C -0.17 -2.45 5.28 -104.32 -0.55 -3.00 16 7 C 0.18 2.83 4.06 -5.20 -0.02 2.81 16 8 N -0.74 -13.80 5.63 -59.40 -0.33 -14.14 16 9 C 0.15 3.33 6.68 -83.32 -0.56 2.77 16 10 C -0.19 -4.01 9.29 -39.44 -0.37 -4.37 16 11 C -0.16 -3.43 10.03 -39.38 -0.40 -3.82 16 12 C -0.18 -4.22 9.99 -39.56 -0.40 -4.61 16 13 C 0.06 1.62 6.67 -38.72 -0.26 1.37 16 14 F -0.14 -3.94 14.27 2.25 0.03 -3.91 16 15 C 0.04 1.07 5.41 -106.57 -0.58 0.50 16 16 C -0.48 -12.23 8.13 -37.91 -0.31 -12.54 16 17 H 0.07 1.79 7.14 -52.49 -0.37 1.42 16 18 C 0.08 2.10 4.52 -17.32 -0.08 2.02 16 19 N -0.79 -21.06 11.11 55.55 0.62 -20.44 16 20 Si 0.90 19.33 29.60 -169.99 -5.03 14.30 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 C 0.34 5.04 7.72 -17.12 -0.13 4.91 16 25 O -0.48 -6.88 12.62 -18.72 -0.24 -7.11 16 26 N -0.51 -7.59 10.30 -9.55 -0.10 -7.69 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.21 6.82 -51.93 -0.35 0.86 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.07 1.05 7.35 -51.93 -0.38 0.67 16 35 H 0.06 0.90 6.61 -51.93 -0.34 0.56 16 36 H 0.40 7.64 6.90 -40.82 -0.28 7.36 16 37 H 0.09 1.75 6.70 -52.49 -0.35 1.40 16 38 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 41 H 0.40 4.54 9.06 45.56 0.41 4.95 16 LS Contribution 347.87 15.07 5.24 5.24 Total: -1.00 -30.15 347.87 -8.48 -38.63 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -4.18 Total: 12.62 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -4.49 Total: -17.50 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.18 Total: -42.27 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.24 Total: -7.11 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.03 Total: -3.91 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.15 -8.48 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162610550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.646 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds