Wall clock time and date at job start Tue Mar 31 2020 11:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38099 * 119.58044 * 2 1 4 4 C 1.38779 * 119.28487 * 180.24971 * 3 2 1 5 5 C 1.50705 * 120.75590 * 179.74962 * 4 3 2 6 6 C 1.38421 * 118.48975 * 359.47765 * 4 3 2 7 7 C 1.50693 * 120.44927 * 180.23308 * 6 4 3 8 8 N 1.46500 * 109.47626 * 89.99638 * 7 6 4 9 9 C 1.38801 * 120.00258 * 180.02562 * 8 7 6 10 10 C 1.38635 * 120.21734 * 359.97438 * 9 8 7 11 11 C 1.38223 * 120.21434 * 179.97438 * 10 9 8 12 12 C 1.38790 * 120.66696 * 359.97438 * 11 10 9 13 13 C 1.37742 * 120.42580 * 0.05016 * 12 11 10 14 14 F 1.35096 * 120.11122 * 179.97438 * 13 12 11 15 15 C 1.40992 * 119.76486 * 359.69710 * 13 12 11 16 16 C 1.40996 * 120.31909 * 180.29950 * 15 13 12 17 17 H 1.07997 * 119.99920 * 216.78462 * 16 15 13 18 18 C 1.39918 * 119.99734 * 36.78950 * 16 15 13 19 19 N 1.30907 * 120.00055 * 19.58564 * 18 16 15 20 20 Si 1.86799 * 119.99583 * 199.58991 * 18 16 15 21 21 H 1.48488 * 109.47418 * 89.99870 * 20 18 16 22 22 H 1.48503 * 109.46851 * 210.00037 * 20 18 16 23 23 H 1.48504 * 109.47007 * 329.99509 * 20 18 16 24 24 C 1.38883 * 119.10988 * 0.24975 * 6 4 3 25 25 O 1.35672 * 119.68480 * 179.97438 * 24 6 4 26 26 N 1.31938 * 119.58729 * 179.71478 * 2 1 3 27 27 H 1.08999 * 109.47603 * 270.27902 * 1 2 3 28 28 H 1.09002 * 109.47346 * 30.28716 * 1 2 3 29 29 H 1.09005 * 109.46754 * 150.27958 * 1 2 3 30 30 H 1.08001 * 120.35581 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.46949 * 269.71908 * 5 4 3 32 32 H 1.09003 * 109.46854 * 149.71687 * 5 4 3 33 33 H 1.08993 * 109.46859 * 29.72295 * 5 4 3 34 34 H 1.09002 * 109.47614 * 210.00257 * 7 6 4 35 35 H 1.09006 * 109.47118 * 329.99632 * 7 6 4 36 36 H 0.97000 * 119.99483 * 0.02562 * 8 7 6 37 37 H 1.07995 * 119.88907 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.66256 * 180.02562 * 11 10 9 39 39 H 1.07997 * 119.78151 * 180.02562 * 12 11 10 40 40 H 0.97000 * 119.99729 * 179.97438 * 19 18 16 41 41 H 0.96704 * 113.99740 * 89.99881 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2010 0.0000 4 6 3.5765 1.1938 -0.0053 5 6 4.3538 2.4849 -0.0111 6 6 4.2305 -0.0261 0.0007 7 6 5.7362 -0.0854 0.0006 8 7 6.2247 -0.0975 1.3818 9 6 7.5884 -0.1493 1.6353 10 6 8.4922 -0.1903 0.5849 11 6 9.8502 -0.2414 0.8374 12 6 10.3281 -0.2519 2.1404 13 6 9.4540 -0.2125 3.2042 14 9 9.9261 -0.2236 4.4700 15 6 8.0653 -0.1548 2.9674 16 6 7.1604 -0.1077 4.0477 17 1 6.2163 -0.6283 3.9843 18 6 7.4856 0.6136 5.2017 19 7 8.4113 1.5380 5.1567 20 14 6.5988 0.2571 6.8066 21 1 7.3341 -0.7931 7.5558 22 1 6.5363 1.4958 7.6233 23 1 5.2209 -0.2146 6.5166 24 6 3.4803 -1.1949 0.0064 25 8 4.1093 -2.3970 0.0118 26 7 2.1584 -1.1473 0.0057 27 1 -0.3634 0.0050 1.0276 28 1 -0.3634 0.8874 -0.5183 29 1 -0.3633 -0.8925 -0.5095 30 1 1.6477 2.1357 -0.0004 31 1 4.5416 2.7913 -1.0402 32 1 5.3034 2.3396 0.5038 33 1 3.7786 3.2576 0.4989 34 1 6.0643 -0.9915 -0.5088 35 1 6.1342 0.7871 -0.5178 36 1 5.5950 -0.0693 2.1191 37 1 8.1341 -0.1814 -0.4339 38 1 10.5465 -0.2726 0.0123 39 1 11.3921 -0.2916 2.3212 40 1 8.6365 2.0383 5.9566 41 1 4.2920 -2.7413 0.8968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162610550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:37 Heat of formation + Delta-G solvation = -52.344127 kcal Electronic energy + Delta-G solvation = -26089.350348 eV Core-core repulsion = 22268.586079 eV Total energy + Delta-G solvation = -3820.764269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.85998 -41.78616 -39.59583 -38.26708 -36.72924 -35.37300 -34.66465 -32.74560 -31.64142 -30.38682 -28.84756 -28.39735 -26.91502 -25.68244 -23.70717 -22.81214 -22.07525 -21.51307 -19.33948 -19.23777 -18.33498 -18.19249 -17.34192 -16.83992 -16.67523 -16.08686 -15.88386 -15.63149 -15.55397 -15.13398 -15.06327 -14.82447 -14.45283 -14.17200 -14.09715 -13.83792 -13.59995 -13.38213 -13.16318 -13.09544 -13.06416 -12.92705 -12.81854 -12.58539 -12.45050 -12.39576 -12.25186 -11.87080 -11.34046 -10.86192 -10.61759 -10.44273 -10.40825 -9.71187 -9.02953 -8.59413 -8.09351 -6.14821 -0.08817 0.15848 0.96788 1.09990 1.36202 1.46084 1.47195 2.23661 2.36993 2.72484 2.82859 3.06596 3.50979 3.59461 3.66376 3.83729 3.92631 4.27535 4.30408 4.40487 4.43939 4.54813 4.57546 4.68457 4.72208 4.75971 4.80474 4.81934 4.86391 5.03455 5.10539 5.18648 5.24446 5.33846 5.35034 5.57582 5.62136 5.65054 5.81342 6.04759 6.24250 6.51072 6.52578 6.75421 6.92394 6.94138 7.11803 7.20531 8.46984 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.004384 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.275584 B = 6385.186382 C = 7480.934878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.144 3.856 3 C -0.184 4.184 4 C -0.009 4.009 5 C -0.121 4.121 6 C -0.185 4.185 7 C 0.189 3.811 8 N -0.731 5.731 9 C 0.157 3.843 10 C -0.198 4.198 11 C -0.144 4.144 12 C -0.200 4.200 13 C 0.026 3.974 14 F -0.161 7.161 15 C 0.005 3.995 16 C -0.499 4.499 17 H 0.075 0.925 18 C 0.040 3.960 19 N -0.827 5.827 20 Si 0.964 3.036 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.256 1.256 24 C 0.320 3.680 25 O -0.490 6.490 26 N -0.538 5.538 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.171 0.829 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.392 0.608 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.280 0.720 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.049 1.855 -9.824 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.007 3.993 3 C -0.204 4.204 4 C -0.017 4.017 5 C -0.177 4.177 6 C -0.189 4.189 7 C 0.065 3.935 8 N -0.363 5.363 9 C 0.055 3.945 10 C -0.221 4.221 11 C -0.163 4.163 12 C -0.220 4.220 13 C 0.004 3.996 14 F -0.140 7.140 15 C 0.000 4.000 16 C -0.529 4.529 17 H 0.093 0.907 18 C -0.174 4.174 19 N -0.454 5.454 20 Si 0.787 3.213 21 H -0.200 1.200 22 H -0.198 1.198 23 H -0.179 1.179 24 C 0.142 3.858 25 O -0.299 6.299 26 N -0.259 5.259 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.189 0.811 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.227 0.773 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -13.385 1.275 -10.450 17.029 hybrid contribution 0.619 0.353 2.048 2.169 sum -12.766 1.628 -8.402 15.369 Atomic orbital electron populations 1.20851 0.86053 1.04702 1.04217 1.21673 0.98406 0.86933 0.92292 1.22180 0.93488 1.00460 1.04231 1.20474 0.94469 0.95085 0.91675 1.20943 0.99864 0.92833 1.04053 1.20784 0.96782 0.93250 1.08085 1.19800 0.87752 1.01603 0.84358 1.44046 1.02812 1.83608 1.05811 1.17799 0.84628 1.00131 0.91947 1.20422 0.92805 1.11833 0.97049 1.20422 0.95073 1.06159 0.94658 1.20682 0.98090 1.10299 0.92975 1.17971 0.92913 1.10686 0.78032 1.91251 1.88783 1.94263 1.39694 1.17386 0.91235 0.98986 0.92406 1.19047 1.04240 1.29997 0.99659 0.90667 1.26382 0.95361 0.92743 1.02904 1.69866 1.28152 1.16362 1.31028 0.85469 0.79425 0.78397 0.78049 1.20028 1.19817 1.17914 1.19098 0.86854 0.85328 0.94569 1.84655 1.76566 1.33511 1.35205 1.67056 1.09606 1.32193 1.17059 0.89218 0.87726 0.90808 0.81147 0.88471 0.92040 0.89092 0.91893 0.91388 0.77300 0.85696 0.84894 0.87251 0.91010 0.72705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.17 71.24 0.72 -0.70 16 2 C 0.14 3.21 6.78 42.51 0.29 3.50 16 3 C -0.18 -3.66 9.44 22.37 0.21 -3.44 16 4 C -0.01 -0.21 5.91 -19.69 -0.12 -0.33 16 5 C -0.12 -2.47 9.28 71.24 0.66 -1.81 16 6 C -0.19 -5.16 5.28 -19.67 -0.10 -5.26 16 7 C 0.19 5.68 4.06 85.63 0.35 6.03 16 8 N -0.73 -27.09 5.63 -341.84 -1.92 -29.01 16 9 C 0.16 6.97 6.68 38.94 0.26 7.23 16 10 C -0.20 -7.93 9.29 22.36 0.21 -7.72 16 11 C -0.14 -5.82 10.03 22.40 0.22 -5.60 16 12 C -0.20 -9.32 9.99 22.28 0.22 -9.10 16 13 C 0.03 1.39 6.67 22.83 0.15 1.54 16 14 F -0.16 -9.25 14.27 44.97 0.64 -8.61 16 15 C 0.01 0.28 5.41 -21.12 -0.11 0.16 16 16 C -0.50 -26.25 8.13 23.35 0.19 -26.06 16 17 H 0.08 3.76 7.14 -2.91 -0.02 3.74 16 18 C 0.04 2.11 4.52 85.24 0.39 2.50 16 19 N -0.83 -45.83 11.11 21.83 0.24 -45.59 16 20 Si 0.96 40.47 29.60 68.60 2.03 42.50 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 C 0.32 9.44 7.72 84.78 0.65 10.09 16 25 O -0.49 -14.09 12.62 -89.90 -1.13 -15.22 16 26 N -0.54 -15.37 10.30 -296.97 -3.06 -18.43 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.61 6.82 -2.39 -0.02 1.59 16 33 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 34 H 0.06 1.94 7.35 -2.39 -0.02 1.92 16 35 H 0.07 1.94 6.61 -2.38 -0.02 1.92 16 36 H 0.39 15.26 6.90 -92.71 -0.64 14.62 16 37 H 0.13 4.23 6.70 -2.91 -0.02 4.21 16 38 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 39 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 40 H 0.28 14.45 8.30 -92.71 -0.77 13.68 16 41 H 0.41 9.47 9.06 -74.05 -0.67 8.80 16 Total: -1.00 -67.04 347.87 0.78 -66.26 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.22 Total: 37.08 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 4.20 Total: -28.98 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -4.74 Total: -93.03 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.13 Total: -15.22 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 0.64 Total: -8.61 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -67.04 0.78 -66.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162610550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.918 kcal (2) G-P(sol) polarization free energy of solvation -67.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds