Wall clock time and date at job start Tue Mar 31 2020 12:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 O 1.42902 * 109.46912 * 240.00431 * 2 1 3 5 5 C 1.35774 * 116.99725 * 269.99777 * 4 2 1 6 6 C 1.38901 * 119.60263 * 179.72917 * 5 4 2 7 7 C 1.38319 * 119.19298 * 179.73194 * 6 5 4 8 8 C 1.39413 * 118.42160 * 0.53213 * 7 6 5 9 9 N 1.39980 * 120.43449 * 179.75301 * 8 7 6 10 10 C 1.39780 * 119.99933 * 331.25842 * 9 8 7 11 11 C 1.39443 * 119.91579 * 329.68345 * 10 9 8 12 12 C 1.38360 * 120.46084 * 179.71894 * 11 10 9 13 13 C 1.38012 * 120.29410 * 0.55432 * 12 11 10 14 14 F 1.35088 * 120.09184 * 179.70008 * 13 12 11 15 15 C 1.41026 * 119.82374 * 359.72569 * 13 12 11 16 16 C 1.41290 * 120.22659 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99956 * 328.83845 * 16 15 13 18 18 C 1.39916 * 120.00079 * 148.84415 * 16 15 13 19 19 N 1.30856 * 120.00165 * 155.87247 * 18 16 15 20 20 Si 1.86803 * 119.99721 * 335.86738 * 18 16 15 21 21 H 1.48507 * 109.46903 * 88.36486 * 20 18 16 22 22 H 1.48500 * 109.47080 * 208.36090 * 20 18 16 23 23 H 1.48499 * 109.47145 * 328.36536 * 20 18 16 24 24 C 1.38196 * 119.91959 * 149.95548 * 10 9 8 25 25 C 1.38703 * 119.13833 * 359.73065 * 8 7 6 26 26 N 1.31963 * 120.72628 * 359.97438 * 25 8 7 27 27 H 1.08996 * 109.47011 * 299.99812 * 1 2 3 28 28 H 1.09000 * 109.47039 * 59.99979 * 1 2 3 29 29 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47039 * 120.00021 * 2 1 3 31 31 H 1.09003 * 109.46651 * 60.00198 * 3 2 1 32 32 H 1.08997 * 109.47017 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47446 * 300.00674 * 3 2 1 34 34 H 1.08004 * 120.40320 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.79624 * 180.24023 * 7 6 5 36 36 H 0.97003 * 120.00291 * 151.25858 * 9 8 7 37 37 H 1.08002 * 119.76884 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.85075 * 180.27615 * 12 11 10 39 39 H 0.96995 * 119.99733 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.14644 * 359.97438 * 24 10 9 41 41 H 1.07995 * 119.63985 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.2118 -2.0118 -1.0653 6 6 2.6689 -2.7215 -2.1684 7 6 2.8807 -4.0836 -2.0539 8 6 2.6142 -4.6959 -0.8301 9 7 2.8087 -6.0728 -0.6689 10 6 2.6790 -6.9300 -1.7654 11 6 1.7979 -6.6102 -2.7978 12 6 1.6649 -7.4476 -3.8911 13 6 2.3957 -8.6160 -3.9661 14 9 2.2582 -9.4336 -5.0326 15 6 3.2861 -8.9543 -2.9261 16 6 4.0389 -10.1480 -2.9943 17 1 3.6347 -11.0132 -3.4989 18 6 5.3079 -10.2094 -2.4082 19 7 5.8055 -11.3637 -2.0446 20 14 6.2917 -8.6434 -2.1450 21 1 5.9452 -8.0571 -0.8252 22 1 7.7425 -8.9583 -2.1811 23 1 5.9695 -7.6699 -3.2191 24 6 3.4201 -8.0951 -1.8209 25 6 2.1543 -3.9231 0.2259 26 7 1.9697 -2.6245 0.0807 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 2.8604 -2.2152 -3.1030 35 1 3.2393 -4.6599 -2.8938 36 1 3.0335 -6.4320 0.2036 37 1 1.2183 -5.7004 -2.7455 38 1 0.9829 -7.1881 -4.6872 39 1 6.6851 -11.4061 -1.6379 40 1 4.0995 -8.3445 -1.0192 41 1 1.9449 -4.3892 1.1773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174770887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:08 Heat of formation + Delta-G solvation = -31.140393 kcal Electronic energy + Delta-G solvation = -25303.438461 eV Core-core repulsion = 21483.593655 eV Total energy + Delta-G solvation = -3819.844806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.37959 -40.65804 -38.89690 -37.68305 -35.16451 -33.64492 -33.17724 -31.99550 -30.62962 -29.66904 -27.47893 -27.02786 -25.44755 -23.99732 -22.83710 -21.95572 -21.21699 -20.23645 -18.44976 -17.83517 -17.34912 -16.53318 -16.47469 -15.79917 -15.58687 -14.94628 -14.76500 -14.69731 -14.42434 -14.17083 -13.89263 -13.50630 -13.30821 -13.10725 -12.90194 -12.56591 -12.54592 -12.45039 -12.28696 -12.15653 -11.93003 -11.88492 -11.64587 -11.11665 -10.91668 -10.88879 -10.76242 -10.26224 -10.15413 -9.92754 -9.61138 -9.28625 -9.23057 -8.06669 -7.91922 -7.16002 -6.67484 -4.65890 1.23918 1.41068 2.36910 2.42367 2.99054 3.06082 3.08388 3.19029 3.66701 3.83188 3.89560 4.27697 4.39972 4.71036 4.82339 4.97576 5.05165 5.09075 5.12485 5.24398 5.33743 5.51780 5.55570 5.64369 5.66250 5.70113 5.78334 5.87699 5.97971 6.03789 6.13123 6.19876 6.38177 6.40888 6.55967 6.79721 6.92178 7.17879 7.25268 7.37109 7.50449 7.62829 7.91291 7.99367 8.02523 8.20589 8.45402 8.57481 9.85366 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.003110 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.444841 B = 9001.798104 C = 9677.522303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.083 3.917 3 C -0.150 4.150 4 O -0.307 6.307 5 C 0.274 3.726 6 C -0.153 4.153 7 C -0.086 4.086 8 C 0.122 3.878 9 N -0.682 5.682 10 C 0.199 3.801 11 C -0.259 4.259 12 C -0.088 4.088 13 C -0.030 4.030 14 F -0.158 7.158 15 C 0.089 3.911 16 C -0.438 4.438 17 H 0.097 0.903 18 C 0.089 3.911 19 N -0.789 5.789 20 Si 0.911 3.089 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.249 1.249 24 C -0.260 4.260 25 C 0.077 3.923 26 N -0.512 5.512 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.406 0.594 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.289 0.711 40 H 0.114 0.886 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 17.984 5.230 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 C -0.207 4.207 4 O -0.215 6.215 5 C 0.093 3.907 6 C -0.175 4.175 7 C -0.114 4.114 8 C 0.020 3.980 9 N -0.306 5.306 10 C 0.104 3.896 11 C -0.281 4.281 12 C -0.108 4.108 13 C -0.050 4.050 14 F -0.137 7.137 15 C 0.085 3.915 16 C -0.465 4.465 17 H 0.115 0.885 18 C -0.133 4.133 19 N -0.412 5.412 20 Si 0.736 3.264 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.172 1.172 24 C -0.282 4.282 25 C -0.082 4.082 26 N -0.234 5.234 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.242 0.758 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.131 0.869 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.461 18.407 5.654 19.766 hybrid contribution 0.767 -0.375 -0.129 0.864 sum -3.694 18.032 5.526 19.218 Atomic orbital electron populations 1.22208 0.95252 1.02866 1.02195 1.22225 0.94141 0.92563 0.88444 1.21898 1.01896 0.94238 1.02692 1.86271 1.81045 1.16137 1.38083 1.19552 0.96536 0.84541 0.90063 1.20892 1.04531 0.93411 0.98623 1.21421 0.98393 0.93307 0.98320 1.18655 0.98625 0.85204 0.95549 1.42025 1.75732 1.02015 1.10805 1.17452 0.94534 0.90094 0.87509 1.19951 1.06754 1.03577 0.97787 1.20398 0.98684 0.93684 0.97991 1.17751 1.08027 0.92160 0.87090 1.91302 1.95471 1.72462 1.54453 1.17427 0.92144 0.92539 0.89431 1.19387 1.00074 0.97478 1.29609 0.88489 1.26176 0.98299 0.97980 0.90817 1.69747 1.17524 1.27454 1.26448 0.86335 0.77201 0.81904 0.80926 1.18955 1.21309 1.17183 1.20609 1.07562 0.99057 1.01000 1.21980 0.99166 0.88085 0.99008 1.67057 1.20255 1.11533 1.24551 0.91453 0.92190 0.91946 0.89534 0.90786 0.91945 0.91787 0.84313 0.83329 0.75843 0.87681 0.87311 0.90073 0.86864 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.53 37.16 0.35 -1.24 16 2 C 0.08 0.87 3.11 -26.73 -0.08 0.79 16 3 C -0.15 -1.20 9.56 37.16 0.36 -0.84 16 4 O -0.31 -4.03 9.76 -19.03 -0.19 -4.22 16 5 C 0.27 3.87 7.45 -17.15 -0.13 3.74 16 6 C -0.15 -2.10 10.03 -39.31 -0.39 -2.50 16 7 C -0.09 -1.28 7.99 -39.11 -0.31 -1.59 16 8 C 0.12 1.82 5.98 -83.53 -0.50 1.32 16 9 N -0.68 -10.97 5.47 -8.31 -0.05 -11.01 16 10 C 0.20 3.89 5.95 -83.80 -0.50 3.39 16 11 C -0.26 -4.97 7.89 -39.09 -0.31 -5.28 16 12 C -0.09 -1.79 10.00 -39.62 -0.40 -2.18 16 13 C -0.03 -0.70 7.31 -38.61 -0.28 -0.98 16 14 F -0.16 -3.79 16.78 2.25 0.04 -3.75 16 15 C 0.09 2.18 5.02 -106.78 -0.54 1.65 16 16 C -0.44 -11.55 9.19 -37.79 -0.35 -11.89 16 17 H 0.10 2.74 7.99 -52.49 -0.42 2.32 16 18 C 0.09 2.22 5.30 -17.34 -0.09 2.13 16 19 N -0.79 -20.07 13.93 55.55 0.77 -19.29 16 20 Si 0.91 19.73 25.13 -169.99 -4.27 15.46 16 21 H -0.26 -5.45 6.40 56.52 0.36 -5.09 16 22 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.25 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.26 -5.75 7.33 -38.70 -0.28 -6.03 16 25 C 0.08 1.04 11.10 -17.32 -0.19 0.85 16 26 N -0.51 -7.20 8.63 -13.16 -0.11 -7.31 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.98 6.98 -51.93 -0.36 0.62 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.15 2.34 6.64 -52.49 -0.35 1.99 16 36 H 0.41 5.69 8.90 -40.82 -0.36 5.33 16 37 H 0.11 1.86 6.57 -52.49 -0.35 1.52 16 38 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.11 2.48 5.16 -52.49 -0.27 2.21 16 41 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -27.16 346.63 -7.31 -34.48 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.09 Total: 9.09 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.64 Total: -18.66 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.61 Total: -37.62 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.19 Total: -4.22 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.27 Total: 15.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.16 -7.31 -34.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174770887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.337 kcal (2) G-P(sol) polarization free energy of solvation -27.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds