Wall clock time and date at job start Tue Mar 31 2020 12:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 O 1.42902 * 109.46912 * 240.00431 * 2 1 3 5 5 C 1.35774 * 116.99725 * 269.99777 * 4 2 1 6 6 C 1.38901 * 119.60263 * 179.72917 * 5 4 2 7 7 C 1.38319 * 119.19298 * 179.73194 * 6 5 4 8 8 C 1.39413 * 118.42160 * 0.53213 * 7 6 5 9 9 N 1.39980 * 120.43449 * 179.75301 * 8 7 6 10 10 C 1.39780 * 119.99933 * 331.25842 * 9 8 7 11 11 C 1.39443 * 119.91579 * 329.68345 * 10 9 8 12 12 C 1.38360 * 120.46084 * 179.71894 * 11 10 9 13 13 C 1.38012 * 120.29410 * 0.55432 * 12 11 10 14 14 F 1.35088 * 120.09184 * 179.70008 * 13 12 11 15 15 C 1.41026 * 119.82374 * 359.72569 * 13 12 11 16 16 C 1.41290 * 120.22659 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99956 * 328.83845 * 16 15 13 18 18 C 1.39916 * 120.00079 * 148.84415 * 16 15 13 19 19 N 1.30856 * 120.00165 * 155.87247 * 18 16 15 20 20 Si 1.86803 * 119.99721 * 335.86738 * 18 16 15 21 21 H 1.48507 * 109.46903 * 88.36486 * 20 18 16 22 22 H 1.48500 * 109.47080 * 208.36090 * 20 18 16 23 23 H 1.48499 * 109.47145 * 328.36536 * 20 18 16 24 24 C 1.38196 * 119.91959 * 149.95548 * 10 9 8 25 25 C 1.38703 * 119.13833 * 359.73065 * 8 7 6 26 26 N 1.31963 * 120.72628 * 359.97438 * 25 8 7 27 27 H 1.08996 * 109.47011 * 299.99812 * 1 2 3 28 28 H 1.09000 * 109.47039 * 59.99979 * 1 2 3 29 29 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47039 * 120.00021 * 2 1 3 31 31 H 1.09003 * 109.46651 * 60.00198 * 3 2 1 32 32 H 1.08997 * 109.47017 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47446 * 300.00674 * 3 2 1 34 34 H 1.08004 * 120.40320 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.79624 * 180.24023 * 7 6 5 36 36 H 0.97003 * 120.00291 * 151.25858 * 9 8 7 37 37 H 1.08002 * 119.76884 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.85075 * 180.27615 * 12 11 10 39 39 H 0.96995 * 119.99733 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.14644 * 359.97438 * 24 10 9 41 41 H 1.07995 * 119.63985 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.2118 -2.0118 -1.0653 6 6 2.6689 -2.7215 -2.1684 7 6 2.8807 -4.0836 -2.0539 8 6 2.6142 -4.6959 -0.8301 9 7 2.8087 -6.0728 -0.6689 10 6 2.6790 -6.9300 -1.7654 11 6 1.7979 -6.6102 -2.7978 12 6 1.6649 -7.4476 -3.8911 13 6 2.3957 -8.6160 -3.9661 14 9 2.2582 -9.4336 -5.0326 15 6 3.2861 -8.9543 -2.9261 16 6 4.0389 -10.1480 -2.9943 17 1 3.6347 -11.0132 -3.4989 18 6 5.3079 -10.2094 -2.4082 19 7 5.8055 -11.3637 -2.0446 20 14 6.2917 -8.6434 -2.1450 21 1 5.9452 -8.0571 -0.8252 22 1 7.7425 -8.9583 -2.1811 23 1 5.9695 -7.6699 -3.2191 24 6 3.4201 -8.0951 -1.8209 25 6 2.1543 -3.9231 0.2259 26 7 1.9697 -2.6245 0.0807 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 2.8604 -2.2152 -3.1030 35 1 3.2393 -4.6599 -2.8938 36 1 3.0335 -6.4320 0.2036 37 1 1.2183 -5.7004 -2.7455 38 1 0.9829 -7.1881 -4.6872 39 1 6.6851 -11.4061 -1.6379 40 1 4.0995 -8.3445 -1.0192 41 1 1.9449 -4.3892 1.1773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174770887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:07 Heat of formation + Delta-G solvation = -46.993453 kcal Electronic energy + Delta-G solvation = -25304.125901 eV Core-core repulsion = 21483.593655 eV Total energy + Delta-G solvation = -3820.532247 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.21386 -41.75576 -40.20057 -38.98768 -36.60922 -35.34738 -34.07139 -33.10299 -32.38337 -31.02073 -28.48536 -28.07517 -27.22930 -25.12363 -24.02651 -23.56872 -22.32109 -21.67532 -19.56657 -19.42927 -18.63687 -18.19808 -17.83540 -17.24302 -16.68077 -16.49950 -16.40382 -16.02206 -15.67071 -15.36178 -15.14170 -14.85075 -14.64001 -14.47874 -14.17435 -13.87622 -13.85179 -13.66823 -13.48265 -13.27663 -13.17341 -13.12445 -12.85533 -12.64763 -12.54096 -12.06169 -11.95739 -11.75312 -11.67984 -11.35734 -11.00474 -10.72927 -10.46929 -9.69201 -9.42359 -9.00460 -8.08667 -6.58595 0.12785 0.22603 0.65275 0.79549 1.24554 1.37703 1.45922 2.07011 2.08916 2.38173 2.49730 2.82114 3.29921 3.39692 3.89378 3.95119 3.96620 4.00953 4.09266 4.12645 4.20062 4.34046 4.48503 4.59301 4.69727 4.71789 4.73252 4.86225 4.88251 4.90641 5.01134 5.04529 5.15020 5.20200 5.25776 5.30313 5.43655 5.52985 5.63169 5.71782 5.95253 6.11725 6.34301 6.45304 6.62263 6.67515 6.80456 6.89201 8.07869 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.003110 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.444841 B = 9001.798104 C = 9677.522303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.075 3.925 3 C -0.145 4.145 4 O -0.315 6.315 5 C 0.272 3.728 6 C -0.155 4.155 7 C -0.091 4.091 8 C 0.103 3.897 9 N -0.676 5.676 10 C 0.214 3.786 11 C -0.237 4.237 12 C -0.078 4.078 13 C -0.066 4.066 14 F -0.170 7.170 15 C 0.076 3.924 16 C -0.483 4.483 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.831 5.831 20 Si 0.963 3.037 21 H -0.243 1.243 22 H -0.273 1.273 23 H -0.261 1.261 24 C -0.265 4.265 25 C 0.091 3.909 26 N -0.518 5.518 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.417 0.583 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.298 0.702 40 H 0.114 0.886 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 22.088 6.700 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 C -0.203 4.203 4 O -0.224 6.224 5 C 0.092 3.908 6 C -0.176 4.176 7 C -0.120 4.120 8 C 0.003 3.997 9 N -0.301 5.301 10 C 0.116 3.884 11 C -0.259 4.259 12 C -0.097 4.097 13 C -0.086 4.086 14 F -0.149 7.149 15 C 0.072 3.928 16 C -0.512 4.512 17 H 0.072 0.928 18 C -0.160 4.160 19 N -0.456 5.456 20 Si 0.784 3.216 21 H -0.168 1.168 22 H -0.199 1.199 23 H -0.185 1.185 24 C -0.288 4.288 25 C -0.069 4.069 26 N -0.240 5.240 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.255 0.745 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.277 22.554 7.155 24.243 hybrid contribution 0.797 -1.353 -0.551 1.664 sum -4.480 21.201 6.604 22.653 Atomic orbital electron populations 1.22180 0.94423 1.02013 1.03444 1.22501 0.94871 0.93553 0.87214 1.21906 1.01728 0.92646 1.03972 1.86275 1.80963 1.15670 1.39472 1.19788 0.95791 0.85103 0.90146 1.21045 1.04139 0.93039 0.99368 1.21422 0.98636 0.93843 0.98115 1.18732 1.00211 0.84509 0.96249 1.41886 1.75774 1.02198 1.10241 1.17436 0.93079 0.89490 0.88376 1.20287 1.05388 1.03549 0.96656 1.20717 0.97918 0.92096 0.98982 1.18122 1.09685 0.93579 0.87250 1.91259 1.95661 1.73089 1.54925 1.17585 0.92285 0.92479 0.90482 1.19271 1.02035 0.97484 1.32376 0.92828 1.26810 0.98325 1.00616 0.90243 1.69764 1.18535 1.29038 1.28250 0.85565 0.76550 0.78292 0.81180 1.16775 1.19859 1.18482 1.20636 1.08074 0.99731 1.00309 1.22350 0.97315 0.87726 0.99481 1.67165 1.20544 1.11682 1.24648 0.89329 0.91871 0.93764 0.90353 0.88573 0.92231 0.91448 0.82628 0.84159 0.74537 0.85159 0.84399 0.89132 0.86786 0.80248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.53 71.98 0.69 -1.96 16 2 C 0.07 1.37 3.11 30.60 0.10 1.47 16 3 C -0.15 -1.89 9.56 71.98 0.69 -1.20 16 4 O -0.32 -7.46 9.76 -91.02 -0.89 -8.35 16 5 C 0.27 6.91 7.45 84.80 0.63 7.54 16 6 C -0.15 -3.78 10.03 22.45 0.23 -3.56 16 7 C -0.09 -2.45 7.99 22.57 0.18 -2.27 16 8 C 0.10 2.74 5.98 38.23 0.23 2.97 16 9 N -0.68 -19.55 5.47 -180.21 -0.99 -20.53 16 10 C 0.21 7.81 5.95 38.15 0.23 8.04 16 11 C -0.24 -8.38 7.89 22.59 0.18 -8.20 16 12 C -0.08 -3.02 10.00 22.25 0.22 -2.79 16 13 C -0.07 -3.13 7.31 22.90 0.17 -2.96 16 14 F -0.17 -8.49 16.78 44.97 0.75 -7.74 16 15 C 0.08 3.80 5.02 -21.26 -0.11 3.69 16 16 C -0.48 -27.08 9.19 23.43 0.22 -26.86 16 17 H 0.05 3.33 7.99 -2.91 -0.02 3.31 16 18 C 0.06 2.99 5.30 85.24 0.45 3.44 16 19 N -0.83 -44.23 13.93 21.82 0.30 -43.93 16 20 Si 0.96 40.77 25.13 68.60 1.72 42.49 16 21 H -0.24 -9.38 6.40 99.48 0.64 -8.75 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 C -0.26 -11.51 7.33 22.84 0.17 -11.35 16 25 C 0.09 2.12 11.10 84.78 0.94 3.06 16 26 N -0.52 -12.95 8.63 -308.39 -2.66 -15.61 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.57 6.98 -2.39 -0.02 1.56 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 35 H 0.14 4.00 6.64 -2.91 -0.02 3.98 16 36 H 0.42 10.31 8.90 -92.71 -0.83 9.48 16 37 H 0.13 4.04 6.57 -2.91 -0.02 4.02 16 38 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.30 14.06 8.30 -92.71 -0.77 13.29 16 40 H 0.11 4.89 5.16 -2.91 -0.02 4.88 16 41 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -61.20 346.63 3.62 -57.58 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.18 Total: 27.03 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 5.20 Total: -30.94 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -3.34 Total: -80.07 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.89 Total: -8.35 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.75 Total: -7.74 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.72 Total: 42.49 kcal Total: -61.20 3.62 -57.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174770887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.585 kcal (2) G-P(sol) polarization free energy of solvation -61.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds