Wall clock time and date at job start Tue Mar 31 2020 12:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47365 * 2 1 4 4 O 1.42900 * 109.47000 * 119.99992 * 2 1 3 5 5 C 1.35730 * 117.00306 * 89.99672 * 4 2 1 6 6 C 1.38631 * 119.62089 * 179.97438 * 5 4 2 7 7 C 1.39198 * 119.03996 * 180.02562 * 6 5 4 8 8 N 1.39310 * 120.84330 * 180.02562 * 7 6 5 9 9 C 1.38857 * 120.00361 * 254.32926 * 8 7 6 10 10 C 1.39595 * 119.84080 * 7.74575 * 9 8 7 11 11 C 1.36322 * 120.15751 * 179.71779 * 10 9 8 12 12 C 1.40895 * 119.83797 * 0.57450 * 11 10 9 13 13 C 1.41109 * 120.15435 * 179.67908 * 12 11 10 14 14 H 1.07997 * 119.99938 * 206.35521 * 13 12 11 15 15 C 1.39855 * 119.99996 * 26.35442 * 13 12 11 16 16 N 1.30912 * 119.99992 * 12.99462 * 15 13 12 17 17 Si 1.86795 * 119.99906 * 192.99686 * 15 13 12 18 18 H 1.48499 * 109.47508 * 59.99978 * 17 15 13 19 19 H 1.48508 * 109.47155 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47389 * 299.99916 * 17 15 13 21 21 C 1.40899 * 119.69153 * 359.69595 * 12 11 10 22 22 C 1.36320 * 119.83779 * 0.02562 * 21 12 11 23 23 C 1.39823 * 118.30928 * 359.73870 * 7 6 5 24 24 F 1.35108 * 120.42022 * 180.26201 * 23 7 6 25 25 C 1.37911 * 119.15655 * 0.54711 * 23 7 6 26 26 N 1.32131 * 120.87875 * 359.43501 * 25 23 7 27 27 H 1.09002 * 109.47664 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47318 * 300.00403 * 1 2 3 29 29 H 1.09006 * 109.46822 * 60.00114 * 1 2 3 30 30 H 1.09000 * 109.47318 * 239.99597 * 2 1 3 31 31 H 1.09002 * 109.47379 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47057 * 299.99741 * 3 2 1 33 33 H 1.09000 * 109.47232 * 59.99544 * 3 2 1 34 34 H 1.07993 * 120.48432 * 0.02772 * 6 5 4 35 35 H 0.97000 * 119.99779 * 74.33138 * 8 7 6 36 36 H 1.08004 * 119.91684 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.07645 * 180.29075 * 11 10 9 38 38 H 0.97003 * 119.99872 * 179.97438 * 16 15 13 39 39 H 1.08004 * 120.08255 * 179.97438 * 21 12 11 40 40 H 1.08001 * 119.91744 * 179.97438 * 22 21 12 41 41 H 1.07991 * 119.56076 * 179.71141 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.2116 -2.0115 1.0653 6 6 2.6737 -2.7191 2.1643 7 6 2.8806 -4.0905 2.0466 8 7 3.3435 -4.8383 3.1270 9 6 4.6577 -5.2863 3.1491 10 6 5.5558 -4.8530 2.1723 11 6 6.8489 -5.2842 2.1912 12 6 7.2749 -6.1788 3.1928 13 6 8.6101 -6.6348 3.2147 14 1 8.8479 -7.5881 3.6630 15 6 9.6256 -5.8521 2.6560 16 7 9.3924 -4.6020 2.3448 17 14 11.3146 -6.5903 2.3537 18 1 11.1930 -7.7393 1.4209 19 1 12.2054 -5.5615 1.7591 20 1 11.8887 -7.0568 3.6414 21 6 6.3614 -6.6165 4.1722 22 6 5.0728 -6.1726 4.1444 23 6 2.6061 -4.6995 0.8182 24 9 2.7867 -6.0289 0.6583 25 6 2.1544 -3.9251 -0.2296 26 7 1.9694 -2.6252 -0.0816 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 2.8703 -2.2136 3.0981 35 1 2.7479 -5.0460 3.8638 36 1 5.2264 -4.1712 1.4021 37 1 7.5439 -4.9444 1.4375 38 1 10.0968 -4.0591 1.9576 39 1 6.6811 -7.3026 4.9427 40 1 4.3714 -6.5075 4.8943 41 1 1.9448 -4.3879 -1.1826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176483445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:58 Heat of formation + Delta-G solvation = -22.416229 kcal Electronic energy + Delta-G solvation = -25444.253618 eV Core-core repulsion = 21624.787120 eV Total energy + Delta-G solvation = -3819.466498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.53531 -40.65816 -38.65859 -37.69344 -35.45216 -33.38349 -33.27302 -30.87237 -29.69900 -29.53321 -28.39446 -27.45001 -24.91054 -23.69373 -23.07978 -21.50447 -21.08491 -20.26284 -18.38308 -17.42819 -17.29829 -17.23570 -16.58690 -15.87257 -15.45703 -15.12134 -15.07665 -15.00251 -14.25687 -13.97325 -13.91513 -13.42031 -13.16050 -12.99216 -12.74823 -12.65914 -12.49152 -12.46435 -12.15882 -11.98158 -11.84205 -11.47731 -11.10010 -11.08229 -11.02688 -10.83794 -10.62469 -9.87894 -9.76096 -9.71547 -9.40033 -9.28470 -8.80202 -8.29841 -7.59450 -6.73678 -6.58423 -4.17995 1.03469 1.12069 2.82141 2.88531 3.02627 3.10691 3.13628 3.25196 3.62623 3.90951 3.99658 4.17829 4.32721 4.68718 4.69091 4.80009 4.90634 5.07157 5.13178 5.33531 5.45435 5.52627 5.55658 5.64900 5.70307 5.76424 5.91711 5.98468 6.09817 6.14580 6.19612 6.34262 6.80912 6.87209 7.08653 7.21715 7.25219 7.41832 7.58327 7.71106 7.72879 8.05466 8.14412 8.33964 8.41370 8.66765 8.96342 9.02425 10.30123 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016764 B = 0.003171 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.853237 B = 8828.341330 C = 9649.363819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 C -0.151 4.151 4 O -0.300 6.300 5 C 0.321 3.679 6 C -0.181 4.181 7 C 0.231 3.769 8 N -0.704 5.704 9 C 0.068 3.932 10 C -0.144 4.144 11 C -0.125 4.125 12 C 0.085 3.915 13 C -0.462 4.462 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.806 5.806 17 Si 0.909 3.091 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.192 4.192 22 C -0.137 4.137 23 C 0.002 3.998 24 F -0.122 7.122 25 C 0.114 3.886 26 N -0.526 5.526 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.149 0.851 35 H 0.402 0.598 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.278 0.722 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.457 7.674 -4.804 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.024 3.976 3 C -0.208 4.208 4 O -0.207 6.207 5 C 0.142 3.858 6 C -0.204 4.204 7 C 0.126 3.874 8 N -0.337 5.337 9 C -0.026 4.026 10 C -0.165 4.165 11 C -0.145 4.145 12 C 0.082 3.918 13 C -0.492 4.492 14 H 0.093 0.907 15 C -0.144 4.144 16 N -0.433 5.433 17 Si 0.734 3.266 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.213 4.213 22 C -0.159 4.159 23 C -0.022 4.022 24 F -0.100 7.100 25 C -0.042 4.042 26 N -0.250 5.250 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.167 0.833 35 H 0.239 0.761 36 H 0.101 0.899 37 H 0.142 0.858 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.505 8.566 -5.483 17.715 hybrid contribution 0.856 -0.996 0.613 1.449 sum -13.649 7.570 -4.870 16.350 Atomic orbital electron populations 1.22214 0.95024 1.02852 1.02422 1.22335 0.94238 0.92820 0.88173 1.21911 1.02242 0.93892 1.02804 1.86312 1.80274 1.15696 1.38447 1.19554 0.92232 0.84692 0.89346 1.21408 1.06482 0.92365 1.00150 1.17451 0.92343 0.89524 0.88108 1.41082 1.11156 1.60678 1.20760 1.17223 0.82252 1.02385 1.00742 1.20082 0.94457 1.03132 0.98876 1.20999 0.93296 1.00725 0.99517 1.17561 0.92858 0.91566 0.89813 1.19399 0.91524 1.04564 1.33761 0.90742 1.25848 1.00989 0.94201 0.93318 1.69818 1.34796 1.06129 1.32590 0.86366 0.81140 0.79589 0.79545 1.19006 1.20473 1.19169 1.20564 0.93710 1.06413 1.00566 1.19787 0.96636 1.00402 0.99054 1.19217 1.06813 0.79685 0.96525 1.91524 1.93158 1.29494 1.95868 1.22289 0.95938 0.87913 0.98093 1.67278 1.22397 1.10973 1.24384 0.91963 0.92083 0.91213 0.89173 0.91649 0.90592 0.91692 0.83313 0.76129 0.89900 0.85843 0.91088 0.88637 0.89158 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.53 37.15 0.35 -1.14 16 2 C 0.08 0.85 3.11 -26.74 -0.08 0.77 16 3 C -0.15 -1.28 9.56 37.16 0.36 -0.92 16 4 O -0.30 -4.03 9.76 -18.90 -0.18 -4.21 16 5 C 0.32 4.67 7.45 -17.20 -0.13 4.54 16 6 C -0.18 -2.74 9.99 -39.08 -0.39 -3.13 16 7 C 0.23 3.80 4.55 -83.51 -0.38 3.42 16 8 N -0.70 -12.38 5.28 -8.11 -0.04 -12.43 16 9 C 0.07 1.47 6.61 -83.67 -0.55 0.91 16 10 C -0.14 -3.44 9.12 -39.77 -0.36 -3.80 16 11 C -0.13 -3.30 8.62 -39.27 -0.34 -3.64 16 12 C 0.08 2.27 5.57 -106.80 -0.60 1.67 16 13 C -0.46 -12.35 9.05 -37.89 -0.34 -12.69 16 14 H 0.07 1.91 7.88 -52.49 -0.41 1.49 16 15 C 0.07 1.83 5.22 -17.34 -0.09 1.74 16 16 N -0.81 -21.20 10.79 55.54 0.60 -20.60 16 17 Si 0.91 19.04 29.58 -169.99 -5.03 14.01 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.19 -4.67 9.74 -39.27 -0.38 -5.05 16 22 C -0.14 -3.01 9.83 -39.77 -0.39 -3.40 16 23 C 0.00 0.04 6.91 -39.11 -0.27 -0.23 16 24 F -0.12 -2.16 17.14 2.25 0.04 -2.12 16 25 C 0.11 1.56 11.15 -17.54 -0.20 1.37 16 26 N -0.53 -7.37 8.64 -13.37 -0.12 -7.48 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.02 6.98 -51.93 -0.36 0.65 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.40 6.02 8.83 -40.82 -0.36 5.66 16 36 H 0.08 1.91 6.79 -52.48 -0.36 1.55 16 37 H 0.12 3.39 6.10 -52.49 -0.32 3.07 16 38 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 39 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -28.66 354.46 -8.36 -37.02 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.17 Total: 10.05 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -3.79 Total: -19.58 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.44 Total: -40.51 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.18 Total: -4.21 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.66 -8.36 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176483445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.607 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds