Wall clock time and date at job start Tue Mar 31 2020 12:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47365 * 2 1 4 4 O 1.42900 * 109.47000 * 119.99992 * 2 1 3 5 5 C 1.35730 * 117.00306 * 89.99672 * 4 2 1 6 6 C 1.38631 * 119.62089 * 179.97438 * 5 4 2 7 7 C 1.39198 * 119.03996 * 180.02562 * 6 5 4 8 8 N 1.39310 * 120.84330 * 180.02562 * 7 6 5 9 9 C 1.38857 * 120.00361 * 254.32926 * 8 7 6 10 10 C 1.39595 * 119.84080 * 7.74575 * 9 8 7 11 11 C 1.36322 * 120.15751 * 179.71779 * 10 9 8 12 12 C 1.40895 * 119.83797 * 0.57450 * 11 10 9 13 13 C 1.41109 * 120.15435 * 179.67908 * 12 11 10 14 14 H 1.07997 * 119.99938 * 206.35521 * 13 12 11 15 15 C 1.39855 * 119.99996 * 26.35442 * 13 12 11 16 16 N 1.30912 * 119.99992 * 12.99462 * 15 13 12 17 17 Si 1.86795 * 119.99906 * 192.99686 * 15 13 12 18 18 H 1.48499 * 109.47508 * 59.99978 * 17 15 13 19 19 H 1.48508 * 109.47155 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47389 * 299.99916 * 17 15 13 21 21 C 1.40899 * 119.69153 * 359.69595 * 12 11 10 22 22 C 1.36320 * 119.83779 * 0.02562 * 21 12 11 23 23 C 1.39823 * 118.30928 * 359.73870 * 7 6 5 24 24 F 1.35108 * 120.42022 * 180.26201 * 23 7 6 25 25 C 1.37911 * 119.15655 * 0.54711 * 23 7 6 26 26 N 1.32131 * 120.87875 * 359.43501 * 25 23 7 27 27 H 1.09002 * 109.47664 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47318 * 300.00403 * 1 2 3 29 29 H 1.09006 * 109.46822 * 60.00114 * 1 2 3 30 30 H 1.09000 * 109.47318 * 239.99597 * 2 1 3 31 31 H 1.09002 * 109.47379 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47057 * 299.99741 * 3 2 1 33 33 H 1.09000 * 109.47232 * 59.99544 * 3 2 1 34 34 H 1.07993 * 120.48432 * 0.02772 * 6 5 4 35 35 H 0.97000 * 119.99779 * 74.33138 * 8 7 6 36 36 H 1.08004 * 119.91684 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.07645 * 180.29075 * 11 10 9 38 38 H 0.97003 * 119.99872 * 179.97438 * 16 15 13 39 39 H 1.08004 * 120.08255 * 179.97438 * 21 12 11 40 40 H 1.08001 * 119.91744 * 179.97438 * 22 21 12 41 41 H 1.07991 * 119.56076 * 179.71141 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.2116 -2.0115 1.0653 6 6 2.6737 -2.7191 2.1643 7 6 2.8806 -4.0905 2.0466 8 7 3.3435 -4.8383 3.1270 9 6 4.6577 -5.2863 3.1491 10 6 5.5558 -4.8530 2.1723 11 6 6.8489 -5.2842 2.1912 12 6 7.2749 -6.1788 3.1928 13 6 8.6101 -6.6348 3.2147 14 1 8.8479 -7.5881 3.6630 15 6 9.6256 -5.8521 2.6560 16 7 9.3924 -4.6020 2.3448 17 14 11.3146 -6.5903 2.3537 18 1 11.1930 -7.7393 1.4209 19 1 12.2054 -5.5615 1.7591 20 1 11.8887 -7.0568 3.6414 21 6 6.3614 -6.6165 4.1722 22 6 5.0728 -6.1726 4.1444 23 6 2.6061 -4.6995 0.8182 24 9 2.7867 -6.0289 0.6583 25 6 2.1544 -3.9251 -0.2296 26 7 1.9694 -2.6252 -0.0816 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 2.8703 -2.2136 3.0981 35 1 2.7479 -5.0460 3.8638 36 1 5.2264 -4.1712 1.4021 37 1 7.5439 -4.9444 1.4375 38 1 10.0968 -4.0591 1.9576 39 1 6.6811 -7.3026 4.9427 40 1 4.3714 -6.5075 4.8943 41 1 1.9448 -4.3879 -1.1826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176483445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:57 Heat of formation + Delta-G solvation = -38.184462 kcal Electronic energy + Delta-G solvation = -25444.937380 eV Core-core repulsion = 21624.787120 eV Total energy + Delta-G solvation = -3820.150260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.84810 -41.80809 -40.09898 -39.08944 -37.01958 -35.05552 -34.24080 -32.34105 -31.44951 -30.83014 -30.09584 -28.14016 -26.65610 -24.97165 -24.28584 -23.10781 -22.55944 -21.71746 -19.54696 -19.19847 -18.64651 -18.51678 -18.18190 -17.03030 -16.88103 -16.76039 -16.31360 -16.05822 -15.71785 -15.32461 -14.96864 -14.77790 -14.59000 -14.49031 -14.14127 -13.99943 -13.89270 -13.62283 -13.32872 -13.20195 -13.13854 -12.81608 -12.80437 -12.75596 -12.35750 -11.90207 -11.72361 -11.65602 -11.37945 -11.29311 -10.93553 -10.80089 -10.48465 -9.50316 -9.44913 -8.58793 -8.38982 -6.13274 -0.16204 -0.09460 1.02183 1.12956 1.39778 1.50872 1.55477 1.83082 2.25177 2.43196 2.57986 2.79852 3.05812 3.16506 3.71310 3.76991 3.93711 4.04553 4.05254 4.28874 4.29764 4.32029 4.40689 4.47648 4.72005 4.83147 4.86874 4.88090 4.89925 4.97008 5.02936 5.16822 5.22009 5.28350 5.31118 5.37367 5.61710 5.71155 5.86223 6.12366 6.16287 6.29022 6.53129 6.58277 6.74833 6.91363 7.02240 7.12194 8.44295 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016764 B = 0.003171 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.853237 B = 8828.341330 C = 9649.363819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 C -0.148 4.148 4 O -0.308 6.308 5 C 0.322 3.678 6 C -0.184 4.184 7 C 0.213 3.787 8 N -0.696 5.696 9 C 0.091 3.909 10 C -0.155 4.155 11 C -0.146 4.146 12 C 0.048 3.952 13 C -0.499 4.499 14 H 0.074 0.926 15 C 0.029 3.971 16 N -0.841 5.841 17 Si 0.981 3.019 18 H -0.262 1.262 19 H -0.271 1.271 20 H -0.260 1.260 21 C -0.198 4.198 22 C -0.141 4.141 23 C -0.017 4.017 24 F -0.135 7.135 25 C 0.129 3.871 26 N -0.522 5.522 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.155 0.845 35 H 0.416 0.584 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.283 0.717 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 8.370 -5.199 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 C -0.205 4.205 4 O -0.216 6.216 5 C 0.143 3.857 6 C -0.207 4.207 7 C 0.109 3.891 8 N -0.329 5.329 9 C -0.004 4.004 10 C -0.176 4.176 11 C -0.167 4.167 12 C 0.045 3.955 13 C -0.530 4.530 14 H 0.092 0.908 15 C -0.183 4.183 16 N -0.469 5.469 17 Si 0.802 3.198 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.184 1.184 21 C -0.218 4.218 22 C -0.162 4.162 23 C -0.041 4.041 24 F -0.114 7.114 25 C -0.028 4.028 26 N -0.246 5.246 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.173 0.827 35 H 0.256 0.744 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -15.981 9.289 -5.868 19.393 hybrid contribution 1.040 -1.078 0.701 1.653 sum -14.941 8.211 -5.167 17.815 Atomic orbital electron populations 1.22180 0.93565 1.02412 1.03769 1.22662 0.95468 0.93529 0.86832 1.21936 1.01653 0.92636 1.04254 1.86317 1.80161 1.15052 1.40046 1.19656 0.91532 0.85300 0.89217 1.21421 1.06562 0.91928 1.00793 1.17597 0.93420 0.89975 0.88087 1.40928 1.09848 1.60382 1.21776 1.17271 0.83591 1.00512 0.99071 1.20109 0.94105 1.03542 0.99886 1.20888 0.94076 1.02023 0.99681 1.17881 0.93798 0.92848 0.90972 1.19647 0.92421 1.05125 1.35793 0.90821 1.26685 1.04744 0.94322 0.92574 1.69900 1.36177 1.07315 1.33500 0.85273 0.76203 0.78753 0.79560 1.18693 1.19551 1.18423 1.20815 0.94438 1.06361 1.00193 1.20119 0.96480 0.99854 0.99743 1.19397 1.08251 0.79418 0.97073 1.91489 1.93467 1.30442 1.95961 1.22766 0.93907 0.87519 0.98612 1.67409 1.22129 1.10984 1.24071 0.93246 0.91694 0.88931 0.89901 0.92599 0.88098 0.91286 0.82696 0.74443 0.89623 0.88007 0.90686 0.87583 0.85424 0.78258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.53 71.98 0.69 -1.83 16 2 C 0.07 1.36 3.11 30.59 0.10 1.46 16 3 C -0.15 -2.18 9.56 71.98 0.69 -1.50 16 4 O -0.31 -7.85 9.76 -90.53 -0.88 -8.73 16 5 C 0.32 8.94 7.45 84.71 0.63 9.57 16 6 C -0.18 -5.38 9.99 22.59 0.23 -5.15 16 7 C 0.21 6.79 4.55 38.57 0.18 6.97 16 8 N -0.70 -23.48 5.28 -179.58 -0.95 -24.43 16 9 C 0.09 3.89 6.61 38.68 0.26 4.14 16 10 C -0.15 -7.50 9.12 22.15 0.20 -7.30 16 11 C -0.15 -8.01 8.62 22.47 0.19 -7.82 16 12 C 0.05 2.64 5.57 -21.27 -0.12 2.52 16 13 C -0.50 -27.61 9.05 23.37 0.21 -27.40 16 14 H 0.07 3.90 7.88 -2.91 -0.02 3.88 16 15 C 0.03 1.50 5.22 85.22 0.45 1.95 16 16 N -0.84 -45.82 10.79 21.81 0.24 -45.58 16 17 Si 0.98 39.74 29.58 68.60 2.03 41.77 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 C -0.20 -9.65 9.74 22.47 0.22 -9.43 16 22 C -0.14 -5.98 9.83 22.15 0.22 -5.76 16 23 C -0.02 -0.53 6.91 22.58 0.16 -0.37 16 24 F -0.13 -4.67 17.14 44.97 0.77 -3.90 16 25 C 0.13 3.28 11.15 84.57 0.94 4.23 16 26 N -0.52 -13.70 8.64 -309.03 -2.67 -16.37 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.08 1.72 6.98 -2.39 -0.02 1.71 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.16 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.42 11.57 8.83 -92.71 -0.82 10.75 16 36 H 0.09 4.01 6.79 -2.91 -0.02 3.99 16 37 H 0.10 5.91 6.10 -2.91 -0.02 5.89 16 38 H 0.28 14.09 8.30 -92.71 -0.77 13.33 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.20 3.69 8.06 -2.92 -0.02 3.67 16 Total: -1.00 -63.54 354.46 4.01 -59.54 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.25 Total: 33.43 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 5.23 Total: -35.72 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -3.38 Total: -86.37 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.88 Total: -8.73 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.77 Total: -3.90 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -63.54 4.01 -59.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176483445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.352 kcal (2) G-P(sol) polarization free energy of solvation -63.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds