Wall clock time and date at job start Tue Mar 31 2020 12:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46982 * 2 1 4 4 O 1.42899 * 109.47157 * 120.00228 * 2 1 3 5 5 C 1.35725 * 116.99936 * 89.99631 * 4 2 1 6 6 C 1.38643 * 119.62108 * 180.29696 * 5 4 2 7 7 C 1.39186 * 119.04133 * 180.24949 * 6 5 4 8 8 N 1.39312 * 120.84641 * 179.73166 * 7 6 5 9 9 C 1.38729 * 119.99537 * 2.36657 * 8 7 6 10 10 C 1.38795 * 120.29509 * 260.57086 * 9 8 7 11 11 C 1.38124 * 120.02425 * 179.97438 * 10 9 8 12 12 C 1.38922 * 120.63340 * 0.02562 * 11 10 9 13 13 C 1.36425 * 120.60316 * 359.97438 * 12 11 10 14 14 C 1.40744 * 119.95234 * 359.76692 * 13 12 11 15 15 C 1.41012 * 120.31212 * 180.25329 * 14 13 12 16 16 H 1.08002 * 120.00044 * 210.05085 * 15 14 13 17 17 C 1.39919 * 119.99960 * 30.04800 * 15 14 13 18 18 N 1.30881 * 120.00047 * 11.37360 * 17 15 14 19 19 Si 1.86806 * 120.00075 * 191.37188 * 17 15 14 20 20 H 1.48502 * 109.46942 * 89.99828 * 19 17 15 21 21 H 1.48498 * 109.47198 * 209.99888 * 19 17 15 22 22 H 1.48498 * 109.47241 * 330.00351 * 19 17 15 23 23 C 1.39828 * 118.31231 * 359.46494 * 7 6 5 24 24 F 1.35102 * 120.42214 * 180.24542 * 23 7 6 25 25 C 1.37913 * 119.15207 * 0.27250 * 23 7 6 26 26 N 1.32132 * 120.88204 * 359.97438 * 25 23 7 27 27 H 1.08997 * 109.46914 * 299.99844 * 1 2 3 28 28 H 1.08997 * 109.46857 * 59.99864 * 1 2 3 29 29 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46914 * 240.00156 * 2 1 3 31 31 H 1.09000 * 109.46686 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47133 * 300.00165 * 3 2 1 33 33 H 1.09001 * 109.46703 * 60.00229 * 3 2 1 34 34 H 1.08006 * 120.47882 * 0.02562 * 6 5 4 35 35 H 0.96995 * 120.00049 * 182.63453 * 8 7 6 36 36 H 1.08004 * 119.98658 * 359.97438 * 10 9 8 37 37 H 1.08007 * 119.68412 * 179.97438 * 11 10 9 38 38 H 1.08004 * 119.70005 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.02679 * 180.02562 * 13 12 11 40 40 H 0.97001 * 120.00010 * 180.02562 * 18 17 15 41 41 H 1.08006 * 119.55685 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2117 -2.0115 1.0651 6 6 2.6675 -2.7203 2.1660 7 6 2.8789 -4.0909 2.0469 8 7 3.3416 -4.8389 3.1273 9 6 3.5508 -4.2278 4.3550 10 6 4.8295 -3.8495 4.7400 11 6 5.0314 -3.2409 5.9634 12 6 3.9639 -3.0015 6.8196 13 6 2.6964 -3.3628 6.4672 14 6 2.4614 -3.9795 5.2242 15 6 1.1536 -4.3512 4.8500 16 1 0.9984 -5.2001 4.2006 17 6 0.0570 -3.6202 5.3200 18 7 0.2443 -2.4709 5.9175 19 14 -1.6743 -4.2846 5.0948 20 1 -2.0416 -5.1168 6.2686 21 1 -2.6272 -3.1522 4.9732 22 1 -1.7303 -5.1131 3.8637 23 6 2.6098 -4.6990 0.8168 24 9 2.7952 -6.0274 0.6553 25 6 2.1532 -3.9252 -0.2295 26 7 1.9686 -2.6252 -0.0815 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.8592 -2.2157 3.1015 35 1 3.5211 -5.7860 3.0201 36 1 5.6670 -4.0310 4.0826 37 1 6.0288 -2.9492 6.2576 38 1 4.1390 -2.5251 7.7729 39 1 1.8733 -3.1718 7.1399 40 1 -0.5159 -1.9643 6.2437 41 1 1.9428 -4.3882 -1.1823 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176483751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:02 Heat of formation + Delta-G solvation = -30.770000 kcal Electronic energy + Delta-G solvation = -26541.846340 eV Core-core repulsion = 22722.017595 eV Total energy + Delta-G solvation = -3819.828745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.29051 -40.12519 -38.48566 -37.45581 -34.99710 -33.76329 -32.97544 -30.53273 -29.71756 -29.24920 -27.87789 -27.12347 -25.31334 -23.32727 -22.74801 -21.15704 -21.05567 -20.01176 -18.25156 -17.52948 -17.31126 -16.89722 -15.91018 -15.50982 -15.20519 -15.00044 -14.85488 -14.45222 -14.18449 -13.87735 -13.74959 -13.45578 -13.01799 -12.86872 -12.74774 -12.60247 -12.19973 -12.10295 -11.81751 -11.68800 -11.64978 -11.34709 -11.23294 -11.01620 -10.81845 -10.68195 -10.54147 -10.42231 -9.82099 -9.64810 -9.33471 -9.16166 -7.91792 -7.64055 -7.54065 -7.15036 -6.82104 -4.52638 1.60828 1.95323 2.59645 2.78233 3.01906 3.05415 3.12953 3.36093 3.85743 4.13535 4.25203 4.53298 4.63607 4.77162 5.03051 5.13948 5.36486 5.39661 5.46425 5.56343 5.63287 5.83415 5.88173 5.95752 6.06283 6.10291 6.19929 6.26575 6.27262 6.35790 6.46589 6.72991 6.79626 6.93259 7.01073 7.16850 7.27047 7.56371 7.74942 7.77618 7.92825 8.03528 8.11206 8.28220 8.33746 8.55565 8.71441 8.86013 10.07247 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.005720 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.423115 B = 4893.687992 C = 5355.381312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.297 6.297 5 C 0.343 3.657 6 C -0.217 4.217 7 C 0.278 3.722 8 N -0.638 5.638 9 C -0.017 4.017 10 C -0.080 4.080 11 C -0.235 4.235 12 C -0.100 4.100 13 C -0.148 4.148 14 C 0.122 3.878 15 C -0.444 4.444 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.787 5.787 19 Si 0.906 3.094 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.081 4.081 24 F -0.144 7.144 25 C 0.140 3.860 26 N -0.569 5.569 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.151 0.849 35 H 0.398 0.602 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.282 0.718 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 2.258 -8.374 8.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.205 6.205 5 C 0.167 3.833 6 C -0.244 4.244 7 C 0.163 3.837 8 N -0.257 5.257 9 C -0.111 4.111 10 C -0.099 4.099 11 C -0.255 4.255 12 C -0.119 4.119 13 C -0.167 4.167 14 C 0.117 3.883 15 C -0.473 4.473 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.412 5.412 19 Si 0.730 3.270 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.109 4.109 24 F -0.124 7.124 25 C -0.016 4.016 26 N -0.296 5.296 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.169 0.831 35 H 0.234 0.766 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.783 3.203 -8.551 9.165 hybrid contribution -0.595 -1.296 0.435 1.491 sum 0.188 1.907 -8.116 8.339 Atomic orbital electron populations 1.22206 0.95301 1.02957 1.02065 1.22239 0.94200 0.92546 0.88468 1.21894 1.01858 0.94345 1.02610 1.86338 1.80123 1.16163 1.37827 1.19366 0.90684 0.84156 0.89108 1.20345 1.12244 0.91597 1.00166 1.17883 0.88923 0.90829 0.86093 1.41078 1.68187 1.09819 1.06576 1.17324 0.93454 1.13714 0.86562 1.20718 0.94973 0.98158 0.96092 1.20239 0.97312 1.10940 0.96998 1.20519 0.93671 0.99718 0.97998 1.21036 0.95398 1.03528 0.96782 1.17767 0.92041 0.88804 0.89642 1.19387 0.90154 1.12174 1.25609 0.90563 1.25880 1.01621 0.93834 0.92804 1.69792 1.33732 1.09690 1.27999 0.86322 0.81127 0.79553 0.79956 1.19182 1.20072 1.18589 1.18024 1.17906 0.79024 0.95912 1.91388 1.94419 1.30567 1.96001 1.21912 0.94337 0.88113 0.97257 1.67213 1.26593 1.10822 1.24977 0.92086 0.91639 0.91870 0.89438 0.91958 0.90931 0.91694 0.83134 0.76565 0.89082 0.89089 0.89175 0.86196 0.90667 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.53 37.16 0.35 -1.91 16 2 C 0.08 1.19 3.11 -26.73 -0.08 1.11 16 3 C -0.15 -1.73 9.56 37.16 0.36 -1.38 16 4 O -0.30 -5.53 9.76 -18.88 -0.18 -5.72 16 5 C 0.34 6.73 7.45 -17.20 -0.13 6.61 16 6 C -0.22 -4.63 9.27 -39.08 -0.36 -4.99 16 7 C 0.28 5.63 6.44 -83.51 -0.54 5.09 16 8 N -0.64 -12.94 4.69 -7.85 -0.04 -12.97 16 9 C -0.02 -0.39 4.52 -83.27 -0.38 -0.77 16 10 C -0.08 -1.68 9.96 -39.42 -0.39 -2.08 16 11 C -0.23 -4.92 10.03 -39.37 -0.40 -5.31 16 12 C -0.10 -2.20 9.96 -39.98 -0.40 -2.60 16 13 C -0.15 -3.58 8.59 -39.29 -0.34 -3.91 16 14 C 0.12 2.99 5.32 -106.63 -0.57 2.42 16 15 C -0.44 -11.13 8.44 -37.90 -0.32 -11.45 16 16 H 0.08 1.92 7.66 -52.49 -0.40 1.52 16 17 C 0.08 1.88 5.23 -17.33 -0.09 1.79 16 18 N -0.79 -19.50 10.96 55.55 0.61 -18.89 16 19 Si 0.91 18.72 29.58 -169.99 -5.03 13.69 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.08 -1.47 7.35 -39.11 -0.29 -1.75 16 24 F -0.14 -2.50 16.76 2.25 0.04 -2.46 16 25 C 0.14 2.32 11.15 -17.54 -0.20 2.12 16 26 N -0.57 -10.13 8.64 -13.37 -0.12 -10.24 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.27 6.98 -51.93 -0.36 0.90 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.15 3.61 6.96 -52.48 -0.37 3.24 16 35 H 0.40 7.34 8.41 -40.82 -0.34 7.00 16 36 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.12 3.01 6.34 -52.49 -0.33 2.68 16 40 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 41 H 0.16 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -26.17 353.37 -8.32 -34.49 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -5.17 Total: 13.80 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -3.76 Total: -17.02 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.46 Total: -42.11 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.18 Total: -5.72 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -26.17 -8.32 -34.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176483751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.720 kcal (2) G-P(sol) polarization free energy of solvation -26.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds