Wall clock time and date at job start Tue Mar 31 2020 12:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46982 * 2 1 4 4 O 1.42899 * 109.47157 * 120.00228 * 2 1 3 5 5 C 1.35725 * 116.99936 * 89.99631 * 4 2 1 6 6 C 1.38643 * 119.62108 * 180.29696 * 5 4 2 7 7 C 1.39186 * 119.04133 * 180.24949 * 6 5 4 8 8 N 1.39312 * 120.84641 * 179.73166 * 7 6 5 9 9 C 1.38729 * 119.99537 * 2.36657 * 8 7 6 10 10 C 1.38795 * 120.29509 * 260.57086 * 9 8 7 11 11 C 1.38124 * 120.02425 * 179.97438 * 10 9 8 12 12 C 1.38922 * 120.63340 * 0.02562 * 11 10 9 13 13 C 1.36425 * 120.60316 * 359.97438 * 12 11 10 14 14 C 1.40744 * 119.95234 * 359.76692 * 13 12 11 15 15 C 1.41012 * 120.31212 * 180.25329 * 14 13 12 16 16 H 1.08002 * 120.00044 * 210.05085 * 15 14 13 17 17 C 1.39919 * 119.99960 * 30.04800 * 15 14 13 18 18 N 1.30881 * 120.00047 * 11.37360 * 17 15 14 19 19 Si 1.86806 * 120.00075 * 191.37188 * 17 15 14 20 20 H 1.48502 * 109.46942 * 89.99828 * 19 17 15 21 21 H 1.48498 * 109.47198 * 209.99888 * 19 17 15 22 22 H 1.48498 * 109.47241 * 330.00351 * 19 17 15 23 23 C 1.39828 * 118.31231 * 359.46494 * 7 6 5 24 24 F 1.35102 * 120.42214 * 180.24542 * 23 7 6 25 25 C 1.37913 * 119.15207 * 0.27250 * 23 7 6 26 26 N 1.32132 * 120.88204 * 359.97438 * 25 23 7 27 27 H 1.08997 * 109.46914 * 299.99844 * 1 2 3 28 28 H 1.08997 * 109.46857 * 59.99864 * 1 2 3 29 29 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46914 * 240.00156 * 2 1 3 31 31 H 1.09000 * 109.46686 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47133 * 300.00165 * 3 2 1 33 33 H 1.09001 * 109.46703 * 60.00229 * 3 2 1 34 34 H 1.08006 * 120.47882 * 0.02562 * 6 5 4 35 35 H 0.96995 * 120.00049 * 182.63453 * 8 7 6 36 36 H 1.08004 * 119.98658 * 359.97438 * 10 9 8 37 37 H 1.08007 * 119.68412 * 179.97438 * 11 10 9 38 38 H 1.08004 * 119.70005 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.02679 * 180.02562 * 13 12 11 40 40 H 0.97001 * 120.00010 * 180.02562 * 18 17 15 41 41 H 1.08006 * 119.55685 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2117 -2.0115 1.0651 6 6 2.6675 -2.7203 2.1660 7 6 2.8789 -4.0909 2.0469 8 7 3.3416 -4.8389 3.1273 9 6 3.5508 -4.2278 4.3550 10 6 4.8295 -3.8495 4.7400 11 6 5.0314 -3.2409 5.9634 12 6 3.9639 -3.0015 6.8196 13 6 2.6964 -3.3628 6.4672 14 6 2.4614 -3.9795 5.2242 15 6 1.1536 -4.3512 4.8500 16 1 0.9984 -5.2001 4.2006 17 6 0.0570 -3.6202 5.3200 18 7 0.2443 -2.4709 5.9175 19 14 -1.6743 -4.2846 5.0948 20 1 -2.0416 -5.1168 6.2686 21 1 -2.6272 -3.1522 4.9732 22 1 -1.7303 -5.1131 3.8637 23 6 2.6098 -4.6990 0.8168 24 9 2.7952 -6.0274 0.6553 25 6 2.1532 -3.9252 -0.2295 26 7 1.9686 -2.6252 -0.0815 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.8592 -2.2157 3.1015 35 1 3.5211 -5.7860 3.0201 36 1 5.6670 -4.0310 4.0826 37 1 6.0288 -2.9492 6.2576 38 1 4.1390 -2.5251 7.7729 39 1 1.8733 -3.1718 7.1399 40 1 -0.5159 -1.9643 6.2437 41 1 1.9428 -4.3882 -1.1823 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176483751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:01 Heat of formation + Delta-G solvation = -44.069040 kcal Electronic energy + Delta-G solvation = -26542.423029 eV Core-core repulsion = 22722.017595 eV Total energy + Delta-G solvation = -3820.405435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.69925 -41.58299 -40.09847 -38.93809 -36.60046 -35.55917 -34.14657 -32.13345 -31.50614 -30.71067 -29.53308 -28.13240 -27.10827 -24.82088 -24.18031 -22.90606 -22.51722 -21.52999 -19.70991 -19.23413 -18.88632 -18.35317 -17.56570 -16.95001 -16.87444 -16.36989 -16.23012 -16.00101 -15.71507 -15.57886 -15.08581 -14.84008 -14.56176 -14.38336 -14.36989 -13.93058 -13.47902 -13.40641 -13.20220 -13.12617 -13.04374 -12.92617 -12.81776 -12.64318 -12.42922 -12.21393 -11.84822 -11.65177 -11.59408 -11.35560 -11.12729 -10.62192 -9.43777 -9.37462 -9.29409 -8.79916 -8.56680 -6.39474 0.14237 0.42784 0.85289 1.02353 1.31120 1.41226 1.45129 2.01877 2.14259 2.58118 2.73546 2.76132 3.21837 3.38433 3.63251 3.94363 3.99677 4.08044 4.15230 4.32531 4.41714 4.52610 4.57375 4.67890 4.71168 4.82091 4.86304 4.87853 4.91567 5.09796 5.10495 5.19877 5.23267 5.29326 5.32594 5.43745 5.56239 5.80920 5.98705 6.13170 6.29832 6.33198 6.39655 6.61454 6.79141 6.87781 6.88571 7.09119 8.29481 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.005720 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.423115 B = 4893.687992 C = 5355.381312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.071 3.929 3 C -0.144 4.144 4 O -0.318 6.318 5 C 0.344 3.656 6 C -0.242 4.242 7 C 0.269 3.731 8 N -0.640 5.640 9 C -0.012 4.012 10 C -0.087 4.087 11 C -0.228 4.228 12 C -0.104 4.104 13 C -0.172 4.172 14 C 0.096 3.904 15 C -0.469 4.469 16 H 0.065 0.935 17 C 0.041 3.959 18 N -0.818 5.818 19 Si 0.964 3.036 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.267 1.267 23 C -0.084 4.084 24 F -0.138 7.138 25 C 0.155 3.845 26 N -0.561 5.561 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.406 0.594 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.286 0.714 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 2.397 -10.344 10.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 C -0.201 4.201 4 O -0.226 6.226 5 C 0.167 3.833 6 C -0.269 4.269 7 C 0.154 3.846 8 N -0.260 5.260 9 C -0.105 4.105 10 C -0.106 4.106 11 C -0.247 4.247 12 C -0.122 4.122 13 C -0.192 4.192 14 C 0.092 3.908 15 C -0.498 4.498 16 H 0.083 0.917 17 C -0.175 4.175 18 N -0.444 5.444 19 Si 0.786 3.214 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.192 1.192 23 C -0.112 4.112 24 F -0.117 7.117 25 C -0.002 4.002 26 N -0.288 5.288 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.243 0.757 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.047 3.347 -10.523 11.092 hybrid contribution -0.543 -1.295 0.972 1.708 sum 0.504 2.052 -9.551 9.782 Atomic orbital electron populations 1.22191 0.94564 1.01988 1.03336 1.22645 0.94902 0.93745 0.87126 1.21917 1.01826 0.92445 1.03952 1.86329 1.80137 1.15866 1.40237 1.19398 0.90107 0.84699 0.89100 1.20137 1.14879 0.92348 0.99539 1.18029 0.89139 0.90612 0.86862 1.41005 1.68709 1.10194 1.06108 1.17466 0.93483 1.12648 0.86915 1.21021 0.95156 0.97775 0.96688 1.20635 0.98437 1.09303 0.96353 1.20799 0.93056 0.99185 0.99203 1.21015 0.96042 1.05240 0.96901 1.18046 0.92789 0.89633 0.90321 1.19400 0.91128 1.12594 1.26708 0.91725 1.26532 1.04646 0.93833 0.92480 1.69847 1.34713 1.10558 1.29259 0.85454 0.77187 0.78997 0.79736 1.18164 1.19409 1.19170 1.18068 1.18194 0.79462 0.95467 1.91405 1.94408 1.30025 1.95890 1.22625 0.91831 0.87431 0.98274 1.67372 1.26326 1.11370 1.23770 0.92897 0.88260 0.93896 0.89136 0.92057 0.87640 0.92232 0.86702 0.75661 0.86846 0.85920 0.86868 0.87953 0.90297 0.77993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.53 71.98 0.69 -3.51 16 2 C 0.07 1.99 3.11 30.60 0.10 2.08 16 3 C -0.14 -3.07 9.56 71.98 0.69 -2.38 16 4 O -0.32 -11.97 9.76 -90.48 -0.88 -12.86 16 5 C 0.34 13.56 7.45 84.72 0.63 14.19 16 6 C -0.24 -10.65 9.27 22.59 0.21 -10.44 16 7 C 0.27 10.96 6.44 38.57 0.25 11.21 16 8 N -0.64 -26.30 4.69 -178.75 -0.84 -27.14 16 9 C -0.01 -0.53 4.52 39.00 0.18 -0.36 16 10 C -0.09 -3.62 9.96 22.38 0.22 -3.39 16 11 C -0.23 -9.23 10.03 22.41 0.22 -9.00 16 12 C -0.10 -4.55 9.96 22.01 0.22 -4.33 16 13 C -0.17 -8.63 8.59 22.46 0.19 -8.43 16 14 C 0.10 4.90 5.32 -21.17 -0.11 4.78 16 15 C -0.47 -24.49 8.44 23.36 0.20 -24.29 16 16 H 0.06 3.40 7.66 -2.91 -0.02 3.38 16 17 C 0.04 2.03 5.23 85.24 0.45 2.48 16 18 N -0.82 -42.25 10.96 21.83 0.24 -42.01 16 19 Si 0.96 39.32 29.58 68.60 2.03 41.35 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 C -0.08 -2.95 7.35 22.58 0.17 -2.79 16 24 F -0.14 -4.53 16.76 44.97 0.75 -3.78 16 25 C 0.15 4.74 11.15 84.57 0.94 5.69 16 26 N -0.56 -19.16 8.64 -309.02 -2.67 -21.83 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 2.45 6.98 -2.39 -0.02 2.43 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 5.85 6.96 -2.91 -0.02 5.83 16 35 H 0.41 15.03 8.41 -92.71 -0.78 14.25 16 36 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.10 5.41 6.34 -2.91 -0.02 5.39 16 40 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 41 H 0.20 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -58.74 353.37 4.15 -54.59 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.28 Total: 40.19 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 5.23 Total: -28.51 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -3.27 Total: -90.98 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.88 Total: -12.86 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.75 Total: -3.78 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -58.74 4.15 -54.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176483751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.519 kcal (2) G-P(sol) polarization free energy of solvation -58.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds