Wall clock time and date at job start Tue Mar 31 2020 12:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47344 * 2 1 4 4 O 1.42895 * 109.46811 * 120.00675 * 2 1 3 5 5 C 1.35765 * 117.00504 * 90.00020 * 4 2 1 6 6 N 1.32128 * 119.72588 * 359.97438 * 5 4 2 7 7 C 1.32014 * 121.72237 * 180.02562 * 6 5 4 8 8 C 1.38070 * 120.98494 * 359.97438 * 7 6 5 9 9 C 1.38744 * 119.34734 * 0.02562 * 8 7 6 10 10 C 1.38993 * 118.41857 * 359.97438 * 9 8 7 11 11 N 1.39963 * 120.51072 * 179.97438 * 10 9 8 12 12 C 1.39779 * 119.99729 * 352.72239 * 11 10 9 13 13 C 1.39445 * 119.91478 * 318.89900 * 12 11 10 14 14 C 1.38357 * 120.45750 * 179.72249 * 13 12 11 15 15 C 1.38013 * 120.29352 * 0.55000 * 14 13 12 16 16 F 1.35099 * 120.09067 * 179.70341 * 15 14 13 17 17 C 1.41026 * 119.82561 * 359.72410 * 15 14 13 18 18 C 1.41289 * 120.22424 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00177 * 33.61259 * 18 17 15 20 20 C 1.39917 * 119.99678 * 213.60836 * 18 17 15 21 21 N 1.30856 * 120.00218 * 358.50538 * 20 18 17 22 22 Si 1.86802 * 119.99786 * 178.50538 * 20 18 17 23 23 H 1.48496 * 109.47308 * 60.00042 * 22 20 18 24 24 H 1.48500 * 109.47133 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47249 * 300.00140 * 22 20 18 26 26 C 1.38191 * 119.91625 * 139.17018 * 12 11 10 27 27 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46565 * 300.00047 * 1 2 3 29 29 H 1.09001 * 109.47087 * 59.99623 * 1 2 3 30 30 H 1.08998 * 109.46565 * 239.99953 * 2 1 3 31 31 H 1.08998 * 109.47192 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47337 * 300.00224 * 3 2 1 33 33 H 1.09001 * 109.46927 * 60.00105 * 3 2 1 34 34 H 1.08002 * 119.51140 * 179.72882 * 7 6 5 35 35 H 1.07991 * 120.32509 * 179.97438 * 8 7 6 36 36 H 1.07992 * 120.78996 * 180.02562 * 9 8 7 37 37 H 0.96996 * 120.00471 * 172.72317 * 11 10 9 38 38 H 1.07996 * 119.76942 * 359.97438 * 13 12 11 39 39 H 1.08005 * 119.85048 * 180.25513 * 14 13 12 40 40 H 0.97000 * 119.99789 * 180.02562 * 21 20 18 41 41 H 1.07999 * 120.14965 * 359.97272 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2117 -2.0119 1.0651 6 7 1.9697 -2.6269 -0.0791 7 6 2.1552 -3.9262 -0.2215 8 6 2.6133 -4.6980 0.8276 9 6 2.8812 -4.0959 2.0485 10 6 2.6768 -2.7265 2.1697 11 7 2.9324 -2.0743 3.3814 12 6 3.2497 -2.8177 4.5218 13 6 2.5636 -4.0008 4.7938 14 6 2.8724 -4.7485 5.9163 15 6 3.8566 -4.3245 6.7860 16 9 4.1507 -5.0547 7.8840 17 6 4.5543 -3.1269 6.5257 18 6 5.5638 -2.6853 7.4101 19 1 6.1810 -3.4048 7.9276 20 6 5.7639 -1.3158 7.6154 21 7 5.0358 -0.4436 6.9663 22 14 7.0705 -0.7326 8.8163 23 1 8.4006 -1.2280 8.3797 24 1 7.0822 0.7519 8.8525 25 1 6.7671 -1.2580 10.1717 26 6 4.2386 -2.3755 5.3797 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.9417 -4.3930 -1.1718 35 1 2.7609 -5.7601 0.6993 36 1 3.2408 -4.6773 2.8845 37 1 2.8894 -1.1065 3.4299 38 1 1.7886 -4.3380 4.1214 39 1 2.3376 -5.6655 6.1153 40 1 5.1748 0.5058 7.1084 41 1 4.7671 -1.4570 5.1709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176737921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:11 Heat of formation + Delta-G solvation = -29.589754 kcal Electronic energy + Delta-G solvation = -25742.995844 eV Core-core repulsion = 21923.218279 eV Total energy + Delta-G solvation = -3819.777566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -47.29592 -40.54802 -38.39604 -37.64041 -35.22724 -33.59341 -33.05935 -31.32263 -29.86461 -29.54939 -27.33444 -27.10993 -25.55875 -23.66033 -22.70079 -21.50326 -21.00617 -20.29728 -18.29300 -17.63705 -17.29600 -16.16500 -16.04826 -15.63366 -15.54126 -14.97107 -14.73078 -14.46114 -14.26020 -14.07815 -13.84147 -13.26663 -13.04066 -12.87594 -12.71642 -12.37179 -12.34305 -12.16634 -12.09480 -11.88172 -11.68888 -11.57463 -11.30329 -11.11687 -10.88631 -10.80986 -10.70007 -10.37925 -10.16659 -9.73054 -9.40464 -9.35590 -8.93126 -7.81093 -7.59108 -6.87809 -6.44830 -4.58625 1.51824 1.58610 2.55331 2.67223 3.01707 3.04344 3.09440 3.18929 3.84054 3.86218 4.10482 4.48162 4.64002 4.87301 4.98262 5.12246 5.22643 5.28737 5.29893 5.45362 5.48622 5.66275 5.69849 5.79381 5.80103 5.85578 5.99510 6.06121 6.16068 6.23436 6.30675 6.47314 6.66306 6.78091 6.80201 7.03611 7.10777 7.34912 7.41192 7.58823 7.71689 7.88670 8.06631 8.16899 8.24485 8.46446 8.66034 8.70757 10.09481 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.003858 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.854603 B = 7256.546564 C = 8758.812854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 C -0.151 4.151 4 O -0.307 6.307 5 C 0.253 3.747 6 N -0.507 5.507 7 C 0.060 3.940 8 C -0.160 4.160 9 C -0.129 4.129 10 C 0.164 3.836 11 N -0.664 5.664 12 C 0.153 3.847 13 C -0.237 4.237 14 C -0.110 4.110 15 C -0.029 4.029 16 F -0.162 7.162 17 C 0.099 3.901 18 C -0.452 4.452 19 H 0.082 0.918 20 C 0.072 3.928 21 N -0.804 5.804 22 Si 0.920 3.080 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.156 4.156 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.412 0.588 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.282 0.718 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 0.556 -12.283 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.031 3.969 3 C -0.208 4.208 4 O -0.215 6.215 5 C 0.069 3.931 6 N -0.230 5.230 7 C -0.096 4.096 8 C -0.181 4.181 9 C -0.159 4.159 10 C 0.058 3.942 11 N -0.286 5.286 12 C 0.059 3.941 13 C -0.259 4.259 14 C -0.130 4.130 15 C -0.049 4.049 16 F -0.141 7.141 17 C 0.095 3.905 18 C -0.482 4.482 19 H 0.100 0.900 20 C -0.144 4.144 21 N -0.430 5.430 22 Si 0.744 3.256 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.178 4.178 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.248 0.752 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.228 1.388 -12.651 13.759 hybrid contribution 0.655 0.069 1.238 1.403 sum -4.573 1.457 -11.413 12.381 Atomic orbital electron populations 1.22201 0.95378 1.02727 1.02143 1.22182 0.93999 0.92481 0.88282 1.21906 1.02009 0.94243 1.02683 1.86220 1.81222 1.15935 1.38151 1.19201 0.99288 0.84849 0.89793 1.67039 1.20035 1.12807 1.23131 1.21961 1.00751 0.87860 0.99020 1.21761 1.02018 1.01061 0.93243 1.21528 1.02386 0.92458 0.99496 1.17945 0.98371 0.92240 0.85673 1.42049 1.73154 1.08583 1.04787 1.17618 0.95984 0.93265 0.87207 1.20155 1.05368 0.99293 1.01059 1.20336 0.98094 0.99620 0.94934 1.18000 1.02600 0.96741 0.87603 1.91281 1.93314 1.76910 1.52585 1.17438 0.92203 0.89218 0.91629 1.19453 1.14824 0.92182 1.21774 0.89992 1.25889 0.95895 0.96538 0.96106 1.69724 1.34352 1.03317 1.35597 0.86160 0.80791 0.77768 0.80851 1.18794 1.20222 1.18832 1.21250 0.98494 1.03754 0.94343 0.92049 0.92149 0.91564 0.89629 0.91874 0.90869 0.91670 0.83295 0.85053 0.82689 0.75199 0.87706 0.87634 0.90682 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.53 37.16 0.35 -1.52 16 2 C 0.09 1.09 3.11 -26.73 -0.08 1.01 16 3 C -0.15 -1.55 9.56 37.16 0.36 -1.19 16 4 O -0.31 -4.83 9.05 -19.00 -0.17 -5.00 16 5 C 0.25 4.21 7.48 -16.94 -0.13 4.08 16 6 N -0.51 -7.72 8.65 -13.16 -0.11 -7.83 16 7 C 0.06 0.79 11.17 -17.53 -0.20 0.60 16 8 C -0.16 -2.14 10.10 -39.46 -0.40 -2.54 16 9 C -0.13 -2.10 8.11 -39.11 -0.32 -2.42 16 10 C 0.16 2.89 6.46 -83.38 -0.54 2.35 16 11 N -0.66 -12.72 5.47 -8.22 -0.04 -12.76 16 12 C 0.15 3.31 5.91 -83.80 -0.50 2.82 16 13 C -0.24 -4.89 7.39 -39.09 -0.29 -5.18 16 14 C -0.11 -2.37 10.00 -39.62 -0.40 -2.76 16 15 C -0.03 -0.71 7.31 -38.61 -0.28 -0.99 16 16 F -0.16 -3.96 16.81 2.25 0.04 -3.93 16 17 C 0.10 2.55 5.55 -106.78 -0.59 1.96 16 18 C -0.45 -11.79 8.71 -37.79 -0.33 -12.12 16 19 H 0.08 2.10 7.82 -52.49 -0.41 1.69 16 20 C 0.07 1.76 5.40 -17.34 -0.09 1.67 16 21 N -0.80 -19.89 10.62 55.55 0.59 -19.30 16 22 Si 0.92 18.48 29.56 -169.99 -5.02 13.46 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 26 C -0.16 -3.80 8.57 -38.70 -0.33 -4.13 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.10 6.99 -51.93 -0.36 0.74 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.16 2.64 5.43 -52.49 -0.28 2.36 16 37 H 0.41 7.69 8.24 -40.82 -0.34 7.35 16 38 H 0.10 1.98 6.57 -52.49 -0.34 1.64 16 39 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 40 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 41 H 0.14 3.51 6.15 -52.49 -0.32 3.18 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -26.95 348.35 -8.24 -35.19 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.00 Total: 13.30 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -3.76 Total: -18.37 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.43 Total: -39.89 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.17 Total: -5.00 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.95 -8.24 -35.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176737921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.598 kcal (2) G-P(sol) polarization free energy of solvation -26.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds