Wall clock time and date at job start Tue Mar 31 2020 12:14:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52996 * 109.47344 * 2 1
4 4 O 1.42895 * 109.46811 * 120.00675 * 2 1 3
5 5 C 1.35765 * 117.00504 * 90.00020 * 4 2 1
6 6 N 1.32128 * 119.72588 * 359.97438 * 5 4 2
7 7 C 1.32014 * 121.72237 * 180.02562 * 6 5 4
8 8 C 1.38070 * 120.98494 * 359.97438 * 7 6 5
9 9 C 1.38744 * 119.34734 * 0.02562 * 8 7 6
10 10 C 1.38993 * 118.41857 * 359.97438 * 9 8 7
11 11 N 1.39963 * 120.51072 * 179.97438 * 10 9 8
12 12 C 1.39779 * 119.99729 * 352.72239 * 11 10 9
13 13 C 1.39445 * 119.91478 * 318.89900 * 12 11 10
14 14 C 1.38357 * 120.45750 * 179.72249 * 13 12 11
15 15 C 1.38013 * 120.29352 * 0.55000 * 14 13 12
16 16 F 1.35099 * 120.09067 * 179.70341 * 15 14 13
17 17 C 1.41026 * 119.82561 * 359.72410 * 15 14 13
18 18 C 1.41289 * 120.22424 * 180.02562 * 17 15 14
19 19 H 1.08001 * 120.00177 * 33.61259 * 18 17 15
20 20 C 1.39917 * 119.99678 * 213.60836 * 18 17 15
21 21 N 1.30856 * 120.00218 * 358.50538 * 20 18 17
22 22 Si 1.86802 * 119.99786 * 178.50538 * 20 18 17
23 23 H 1.48496 * 109.47308 * 60.00042 * 22 20 18
24 24 H 1.48500 * 109.47133 * 180.02562 * 22 20 18
25 25 H 1.48505 * 109.47249 * 300.00140 * 22 20 18
26 26 C 1.38191 * 119.91625 * 139.17018 * 12 11 10
27 27 H 1.08994 * 109.47401 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.46565 * 300.00047 * 1 2 3
29 29 H 1.09001 * 109.47087 * 59.99623 * 1 2 3
30 30 H 1.08998 * 109.46565 * 239.99953 * 2 1 3
31 31 H 1.08998 * 109.47192 * 180.02562 * 3 2 1
32 32 H 1.09001 * 109.47337 * 300.00224 * 3 2 1
33 33 H 1.09001 * 109.46927 * 60.00105 * 3 2 1
34 34 H 1.08002 * 119.51140 * 179.72882 * 7 6 5
35 35 H 1.07991 * 120.32509 * 179.97438 * 8 7 6
36 36 H 1.07992 * 120.78996 * 180.02562 * 9 8 7
37 37 H 0.96996 * 120.00471 * 172.72317 * 11 10 9
38 38 H 1.07996 * 119.76942 * 359.97438 * 13 12 11
39 39 H 1.08005 * 119.85048 * 180.25513 * 14 13 12
40 40 H 0.97000 * 119.99789 * 180.02562 * 21 20 18
41 41 H 1.07999 * 120.14965 * 359.97272 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 8 2.0063 -0.6738 1.1667
5 6 2.2117 -2.0119 1.0651
6 7 1.9697 -2.6269 -0.0791
7 6 2.1552 -3.9262 -0.2215
8 6 2.6133 -4.6980 0.8276
9 6 2.8812 -4.0959 2.0485
10 6 2.6768 -2.7265 2.1697
11 7 2.9324 -2.0743 3.3814
12 6 3.2497 -2.8177 4.5218
13 6 2.5636 -4.0008 4.7938
14 6 2.8724 -4.7485 5.9163
15 6 3.8566 -4.3245 6.7860
16 9 4.1507 -5.0547 7.8840
17 6 4.5543 -3.1269 6.5257
18 6 5.5638 -2.6853 7.4101
19 1 6.1810 -3.4048 7.9276
20 6 5.7639 -1.3158 7.6154
21 7 5.0358 -0.4436 6.9663
22 14 7.0705 -0.7326 8.8163
23 1 8.4006 -1.2280 8.3797
24 1 7.0822 0.7519 8.8525
25 1 6.7671 -1.2580 10.1717
26 6 4.2386 -2.3755 5.3797
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3632 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 3.1301 1.4424 -0.0005
32 1 1.6768 1.9563 -0.8900
33 1 1.6768 1.9563 0.8900
34 1 1.9417 -4.3930 -1.1718
35 1 2.7609 -5.7601 0.6993
36 1 3.2408 -4.6773 2.8845
37 1 2.8894 -1.1065 3.4299
38 1 1.7886 -4.3380 4.1214
39 1 2.3376 -5.6655 6.1153
40 1 5.1748 0.5058 7.1084
41 1 4.7671 -1.4570 5.1709
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001176737921.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:11
Heat of formation + Delta-G solvation = -29.589754 kcal
Electronic energy + Delta-G solvation = -25742.995844 eV
Core-core repulsion = 21923.218279 eV
Total energy + Delta-G solvation = -3819.777566 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.133 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-47.29592 -40.54802 -38.39604 -37.64041 -35.22724 -33.59341 -33.05935 -31.32263
-29.86461 -29.54939 -27.33444 -27.10993 -25.55875 -23.66033 -22.70079 -21.50326
-21.00617 -20.29728 -18.29300 -17.63705 -17.29600 -16.16500 -16.04826 -15.63366
-15.54126 -14.97107 -14.73078 -14.46114 -14.26020 -14.07815 -13.84147 -13.26663
-13.04066 -12.87594 -12.71642 -12.37179 -12.34305 -12.16634 -12.09480 -11.88172
-11.68888 -11.57463 -11.30329 -11.11687 -10.88631 -10.80986 -10.70007 -10.37925
-10.16659 -9.73054 -9.40464 -9.35590 -8.93126 -7.81093 -7.59108 -6.87809
-6.44830 -4.58625 1.51824 1.58610 2.55331 2.67223 3.01707 3.04344
3.09440 3.18929 3.84054 3.86218 4.10482 4.48162 4.64002 4.87301
4.98262 5.12246 5.22643 5.28737 5.29893 5.45362 5.48622 5.66275
5.69849 5.79381 5.80103 5.85578 5.99510 6.06121 6.16068 6.23436
6.30675 6.47314 6.66306 6.78091 6.80201 7.03611 7.10777 7.34912
7.41192 7.58823 7.71689 7.88670 8.06631 8.16899 8.24485 8.46446
8.66034 8.70757 10.09481
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.013963 B = 0.003858 C = 0.003196
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2004.854603 B = 7256.546564 C = 8758.812854
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.087 3.913
3 C -0.151 4.151
4 O -0.307 6.307
5 C 0.253 3.747
6 N -0.507 5.507
7 C 0.060 3.940
8 C -0.160 4.160
9 C -0.129 4.129
10 C 0.164 3.836
11 N -0.664 5.664
12 C 0.153 3.847
13 C -0.237 4.237
14 C -0.110 4.110
15 C -0.029 4.029
16 F -0.162 7.162
17 C 0.099 3.901
18 C -0.452 4.452
19 H 0.082 0.918
20 C 0.072 3.928
21 N -0.804 5.804
22 Si 0.920 3.080
23 H -0.263 1.263
24 H -0.277 1.277
25 H -0.264 1.264
26 C -0.156 4.156
27 H 0.060 0.940
28 H 0.059 0.941
29 H 0.065 0.935
30 H 0.086 0.914
31 H 0.062 0.938
32 H 0.072 0.928
33 H 0.064 0.936
34 H 0.150 0.850
35 H 0.132 0.868
36 H 0.156 0.844
37 H 0.412 0.588
38 H 0.105 0.895
39 H 0.106 0.894
40 H 0.282 0.718
41 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.969 0.556 -12.283 13.261
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.031 3.969
3 C -0.208 4.208
4 O -0.215 6.215
5 C 0.069 3.931
6 N -0.230 5.230
7 C -0.096 4.096
8 C -0.181 4.181
9 C -0.159 4.159
10 C 0.058 3.942
11 N -0.286 5.286
12 C 0.059 3.941
13 C -0.259 4.259
14 C -0.130 4.130
15 C -0.049 4.049
16 F -0.141 7.141
17 C 0.095 3.905
18 C -0.482 4.482
19 H 0.100 0.900
20 C -0.144 4.144
21 N -0.430 5.430
22 Si 0.744 3.256
23 H -0.188 1.188
24 H -0.202 1.202
25 H -0.188 1.188
26 C -0.178 4.178
27 H 0.080 0.920
28 H 0.079 0.921
29 H 0.084 0.916
30 H 0.104 0.896
31 H 0.081 0.919
32 H 0.091 0.909
33 H 0.083 0.917
34 H 0.167 0.833
35 H 0.149 0.851
36 H 0.173 0.827
37 H 0.248 0.752
38 H 0.123 0.877
39 H 0.124 0.876
40 H 0.093 0.907
41 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -5.228 1.388 -12.651 13.759
hybrid contribution 0.655 0.069 1.238 1.403
sum -4.573 1.457 -11.413 12.381
Atomic orbital electron populations
1.22201 0.95378 1.02727 1.02143 1.22182 0.93999 0.92481 0.88282
1.21906 1.02009 0.94243 1.02683 1.86220 1.81222 1.15935 1.38151
1.19201 0.99288 0.84849 0.89793 1.67039 1.20035 1.12807 1.23131
1.21961 1.00751 0.87860 0.99020 1.21761 1.02018 1.01061 0.93243
1.21528 1.02386 0.92458 0.99496 1.17945 0.98371 0.92240 0.85673
1.42049 1.73154 1.08583 1.04787 1.17618 0.95984 0.93265 0.87207
1.20155 1.05368 0.99293 1.01059 1.20336 0.98094 0.99620 0.94934
1.18000 1.02600 0.96741 0.87603 1.91281 1.93314 1.76910 1.52585
1.17438 0.92203 0.89218 0.91629 1.19453 1.14824 0.92182 1.21774
0.89992 1.25889 0.95895 0.96538 0.96106 1.69724 1.34352 1.03317
1.35597 0.86160 0.80791 0.77768 0.80851 1.18794 1.20222 1.18832
1.21250 0.98494 1.03754 0.94343 0.92049 0.92149 0.91564 0.89629
0.91874 0.90869 0.91670 0.83295 0.85053 0.82689 0.75199 0.87706
0.87634 0.90682 0.84328
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.87 9.53 37.16 0.35 -1.52 16
2 C 0.09 1.09 3.11 -26.73 -0.08 1.01 16
3 C -0.15 -1.55 9.56 37.16 0.36 -1.19 16
4 O -0.31 -4.83 9.05 -19.00 -0.17 -5.00 16
5 C 0.25 4.21 7.48 -16.94 -0.13 4.08 16
6 N -0.51 -7.72 8.65 -13.16 -0.11 -7.83 16
7 C 0.06 0.79 11.17 -17.53 -0.20 0.60 16
8 C -0.16 -2.14 10.10 -39.46 -0.40 -2.54 16
9 C -0.13 -2.10 8.11 -39.11 -0.32 -2.42 16
10 C 0.16 2.89 6.46 -83.38 -0.54 2.35 16
11 N -0.66 -12.72 5.47 -8.22 -0.04 -12.76 16
12 C 0.15 3.31 5.91 -83.80 -0.50 2.82 16
13 C -0.24 -4.89 7.39 -39.09 -0.29 -5.18 16
14 C -0.11 -2.37 10.00 -39.62 -0.40 -2.76 16
15 C -0.03 -0.71 7.31 -38.61 -0.28 -0.99 16
16 F -0.16 -3.96 16.81 2.25 0.04 -3.93 16
17 C 0.10 2.55 5.55 -106.78 -0.59 1.96 16
18 C -0.45 -11.79 8.71 -37.79 -0.33 -12.12 16
19 H 0.08 2.10 7.82 -52.49 -0.41 1.69 16
20 C 0.07 1.76 5.40 -17.34 -0.09 1.67 16
21 N -0.80 -19.89 10.62 55.55 0.59 -19.30 16
22 Si 0.92 18.48 29.56 -169.99 -5.02 13.46 16
23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16
24 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16
25 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16
26 C -0.16 -3.80 8.57 -38.70 -0.33 -4.13 16
27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.09 1.10 6.99 -51.93 -0.36 0.74 16
31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16
35 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16
36 H 0.16 2.64 5.43 -52.49 -0.28 2.36 16
37 H 0.41 7.69 8.24 -40.82 -0.34 7.35 16
38 H 0.10 1.98 6.57 -52.49 -0.34 1.64 16
39 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16
40 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16
41 H 0.14 3.51 6.15 -52.49 -0.32 3.18 16
LS Contribution 348.35 15.07 5.25 5.25
Total: -1.00 -26.95 348.35 -8.24 -35.19
By element:
Atomic # 1 Polarization: 18.30 SS G_CDS: -5.00 Total: 13.30 kcal
Atomic # 6 Polarization: -14.61 SS G_CDS: -3.76 Total: -18.37 kcal
Atomic # 7 Polarization: -40.33 SS G_CDS: 0.43 Total: -39.89 kcal
Atomic # 8 Polarization: -4.83 SS G_CDS: -0.17 Total: -5.00 kcal
Atomic # 9 Polarization: -3.96 SS G_CDS: 0.04 Total: -3.93 kcal
Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -26.95 -8.24 -35.19 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001176737921.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.598 kcal
(2) G-P(sol) polarization free energy of solvation -26.948 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.350 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.188 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds